data_8HX6 # _model_server_result.job_id KP7dbubO-i3lK2mx1LhMXA _model_server_result.datetime_utc '2024-11-17 13:44:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8HX6 # _exptl.entry_id 8HX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HX6 _cell.length_a 98.67 _cell.length_b 171.405 _cell.length_c 160.838 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 96 A VAL 80 1_555 A N OCS 97 A OCS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C OCS 97 A OCS 81 1_555 A N LEU 98 A LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C VAL 96 B VAL 80 1_555 B N OCS 97 B OCS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C OCS 97 B OCS 81 1_555 B N LEU 98 B LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A O SER 190 A SER 174 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc2 A OD1 ASP 191 A ASP 175 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 237 n n C1 O2 MLT sing 238 n n C1 C2 MLT sing 239 n n C2 O3 MLT sing 240 n n C2 C3 MLT sing 241 n n C2 H2 MLT sing 242 n n O3 HO3 MLT sing 243 n n C3 C4 MLT sing 244 n n C3 H31 MLT sing 245 n n C3 H32 MLT sing 246 n n C4 O4 MLT doub 247 n n C4 O5 MLT sing 248 n n O5 HO5 MLT sing 249 n n O2 H6 MLT sing 250 n n # _atom_sites.entry_id 8HX6 _atom_sites.fract_transf_matrix[1][1] 0.010135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRP A 1 701 701 TRP TRP . D 3 MLT A 1 702 801 MLT MLT . E 4 MG A 1 703 1 MG MG . F 2 TRP B 1 701 701 TRP TRP . G 5 SIN B 1 702 801 SIN SIN . H 6 HOH A 1 801 6 HOH HOH . H 6 HOH A 2 802 27 HOH HOH . H 6 HOH A 3 803 30 HOH HOH . H 6 HOH A 4 804 13 HOH HOH . H 6 HOH A 5 805 1 HOH HOH . H 6 HOH A 6 806 24 HOH HOH . H 6 HOH A 7 807 14 HOH HOH . H 6 HOH A 8 808 42 HOH HOH . H 6 HOH A 9 809 38 HOH HOH . H 6 HOH A 10 810 21 HOH HOH . H 6 HOH A 11 811 3 HOH HOH . H 6 HOH A 12 812 4 HOH HOH . H 6 HOH A 13 813 34 HOH HOH . H 6 HOH A 14 814 23 HOH HOH . H 6 HOH A 15 815 8 HOH HOH . H 6 HOH A 16 816 45 HOH HOH . H 6 HOH A 17 817 48 HOH HOH . H 6 HOH A 18 818 2 HOH HOH . H 6 HOH A 19 819 7 HOH HOH . H 6 HOH A 20 820 10 HOH HOH . H 6 HOH A 21 821 26 HOH HOH . H 6 HOH A 22 822 17 HOH HOH . H 6 HOH A 23 823 35 HOH HOH . H 6 HOH A 24 824 25 HOH HOH . H 6 HOH A 25 825 32 HOH HOH . H 6 HOH A 26 826 31 HOH HOH . H 6 HOH A 27 827 36 HOH HOH . H 6 HOH A 28 828 50 HOH HOH . H 6 HOH A 29 829 28 HOH HOH . H 6 HOH A 30 830 29 HOH HOH . H 6 HOH A 31 831 41 HOH HOH . H 6 HOH A 32 832 18 HOH HOH . H 6 HOH A 33 833 40 HOH HOH . I 6 HOH B 1 801 37 HOH HOH . I 6 HOH B 2 802 33 HOH HOH . I 6 HOH B 3 803 39 HOH HOH . I 6 HOH B 4 804 44 HOH HOH . I 6 HOH B 5 805 11 HOH HOH . I 6 HOH B 6 806 9 HOH HOH . I 6 HOH B 7 807 16 HOH HOH . I 6 HOH B 8 808 19 HOH HOH . I 6 HOH B 9 809 12 HOH HOH . I 6 HOH B 10 810 15 HOH HOH . I 6 HOH B 11 811 43 HOH HOH . I 6 HOH B 12 812 20 HOH HOH . I 6 HOH B 13 813 5 HOH HOH . I 6 HOH B 14 814 46 HOH HOH . I 6 HOH B 15 815 47 HOH HOH . I 6 HOH B 16 816 22 HOH HOH . I 6 HOH B 17 817 49 HOH HOH . I 6 HOH B 18 818 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . D 3 -23.107 -7.599 -26.913 1 67.3 ? C1 MLT 702 A 1 HETATM 2 O O1 MLT . . . D 3 -23.302 -7.603 -28.145 1 70.08 ? O1 MLT 702 A 1 HETATM 3 O O2 MLT . . . D 3 -23.732 -8.283 -26.071 1 65.75 ? O2 MLT 702 A 1 HETATM 4 C C2 MLT . . . D 3 -22.006 -6.684 -26.372 1 66.43 ? C2 MLT 702 A 1 HETATM 5 O O3 MLT . . . D 3 -22.398 -6.286 -25.072 1 66.45 ? O3 MLT 702 A 1 HETATM 6 C C3 MLT . . . D 3 -21.718 -5.452 -27.254 1 65.96 ? C3 MLT 702 A 1 HETATM 7 C C4 MLT . . . D 3 -21.208 -5.746 -28.66 1 65.1 ? C4 MLT 702 A 1 HETATM 8 O O4 MLT . . . D 3 -21.833 -5.264 -29.622 1 63.93 ? O4 MLT 702 A 1 HETATM 9 O O5 MLT . . . D 3 -20.182 -6.441 -28.795 1 64.77 ? O5 MLT 702 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #