data_8HX8 # _model_server_result.job_id CkF192R-a3KEvjpV5-ym9Q _model_server_result.datetime_utc '2024-11-17 13:21:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8HX8 # _exptl.entry_id 8HX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HX8 _cell.length_a 98.334 _cell.length_b 172.848 _cell.length_c 161.054 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 96 A VAL 80 1_555 A N OCS 97 A OCS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C OCS 97 A OCS 81 1_555 A N LEU 98 A LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 B C VAL 96 B VAL 80 1_555 B N OCS 97 B OCS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 B C OCS 97 B OCS 81 1_555 B N LEU 98 B LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A O ILE 188 A ILE 172 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc2 A O SER 190 A SER 174 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A OE2 GLU 544 A GLU 528 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc4 A OE2 GLU 678 A GLU 662 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 335 n n N H TRP sing 336 n n N H2 TRP sing 337 n n CA C TRP sing 338 n n CA CB TRP sing 339 n n CA HA TRP sing 340 n n C O TRP doub 341 n n C OXT TRP sing 342 n n CB CG TRP sing 343 n n CB HB2 TRP sing 344 n n CB HB3 TRP sing 345 n n CG CD1 TRP doub 346 n y CG CD2 TRP sing 347 n y CD1 NE1 TRP sing 348 n y CD1 HD1 TRP sing 349 n n CD2 CE2 TRP doub 350 n y CD2 CE3 TRP sing 351 n y NE1 CE2 TRP sing 352 n y NE1 HE1 TRP sing 353 n n CE2 CZ2 TRP sing 354 n y CE3 CZ3 TRP doub 355 n y CE3 HE3 TRP sing 356 n n CZ2 CH2 TRP doub 357 n y CZ2 HZ2 TRP sing 358 n n CZ3 CH2 TRP sing 359 n y CZ3 HZ3 TRP sing 360 n n CH2 HH2 TRP sing 361 n n OXT HXT TRP sing 362 n n # _atom_sites.entry_id 8HX8 _atom_sites.fract_transf_matrix[1][1] 0.010169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRP A 1 701 701 TRP TRP . D 3 SIN A 1 702 801 SIN SIN . E 4 MG A 1 703 1 MG MG . F 4 MG A 1 704 2 MG MG . G 2 TRP B 1 701 702 TRP TRP . H 5 HOH A 1 801 2 HOH HOH . H 5 HOH A 2 802 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . C 2 27.63 -9.022 62.168 1 64.33 ? N TRP 701 A 1 HETATM 2 C CA TRP . . . C 2 28.713 -9.922 61.691 1 64.11 ? CA TRP 701 A 1 HETATM 3 C C TRP . . . C 2 28.369 -11.362 62.09 1 65.67 ? C TRP 701 A 1 HETATM 4 O O TRP . . . C 2 28.976 -12.281 61.502 1 69.54 ? O TRP 701 A 1 HETATM 5 C CB TRP . . . C 2 30.079 -9.475 62.234 1 65.03 ? CB TRP 701 A 1 HETATM 6 C CG TRP . . . C 2 30.291 -7.991 62.164 1 64.76 ? CG TRP 701 A 1 HETATM 7 C CD1 TRP . . . C 2 29.899 -7.071 63.09 1 63.8 ? CD1 TRP 701 A 1 HETATM 8 C CD2 TRP . . . C 2 30.88 -7.24 61.083 1 63.84 ? CD2 TRP 701 A 1 HETATM 9 N NE1 TRP . . . C 2 30.222 -5.809 62.675 1 62.85 ? NE1 TRP 701 A 1 HETATM 10 C CE2 TRP . . . C 2 30.825 -5.877 61.45 1 62.69 ? CE2 TRP 701 A 1 HETATM 11 C CE3 TRP . . . C 2 31.456 -7.579 59.852 1 62.39 ? CE3 TRP 701 A 1 HETATM 12 C CZ2 TRP . . . C 2 31.316 -4.86 60.631 1 63.53 ? CZ2 TRP 701 A 1 HETATM 13 C CZ3 TRP . . . C 2 31.944 -6.574 59.043 1 63.42 ? CZ3 TRP 701 A 1 HETATM 14 C CH2 TRP . . . C 2 31.874 -5.232 59.428 1 62.86 ? CH2 TRP 701 A 1 HETATM 15 O OXT TRP . . . C 2 27.489 -11.512 62.956 1 62.72 ? OXT TRP 701 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #