data_8HXW # _model_server_result.job_id db4DujNIGQ18-MJzvSp3Iw _model_server_result.datetime_utc '2024-12-11 14:46:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 8HXW # _exptl.entry_id 8HXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HXW _cell.length_a 45.71 _cell.length_b 90.221 _cell.length_c 125.904 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1 B,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 114 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A ND1 HIS 85 A HIS 116 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc3 A OD2 ASP 87 A ASP 118 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc4 A NE2 HIS 148 A HIS 179 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc5 A SG CYS 167 A CYS 198 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc6 A NE2 HIS 209 A HIS 240 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc7 D ZN ZN . A ZN 302 1_555 E N03 5ZR . A 5ZR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc8 D ZN ZN . A ZN 302 1_555 E O07 5ZR . A 5ZR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 K O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc10 B NE2 HIS 83 B HIS 114 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc11 B ND1 HIS 85 B HIS 116 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc12 B OD2 ASP 87 B ASP 118 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc13 B NE2 HIS 148 B HIS 179 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc14 B SG CYS 167 B CYS 198 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc15 B NE2 HIS 209 B HIS 240 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc16 H ZN ZN . B ZN 301 1_555 L O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc17 I ZN ZN . B ZN 302 1_555 J N03 5ZR . B 5ZR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc18 I ZN ZN . B ZN 302 1_555 J O07 5ZR . B 5ZR 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc19 I ZN ZN . B ZN 302 1_555 L O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 117 n n C O2 FMT sing 118 n n C H FMT sing 119 n n O2 HO2 FMT sing 120 n n # _atom_sites.entry_id 8HXW _atom_sites.fract_transf_matrix[1][1] 0.021877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 301 ZN ZN . D 2 ZN A 1 302 302 ZN ZN . E 3 5ZR A 1 303 401 5ZR 667 . F 4 FMT A 1 304 141 FMT FMT . G 4 FMT A 1 305 142 FMT FMT . H 2 ZN B 1 301 301 ZN ZN . I 2 ZN B 1 302 302 ZN ZN . J 3 5ZR B 1 303 401 5ZR 667 . K 5 HOH A 1 401 83 HOH HOH . K 5 HOH A 2 402 107 HOH HOH . K 5 HOH A 3 403 51 HOH HOH . K 5 HOH A 4 404 67 HOH HOH . K 5 HOH A 5 405 66 HOH HOH . K 5 HOH A 6 406 69 HOH HOH . K 5 HOH A 7 407 2 HOH HOH . K 5 HOH A 8 408 16 HOH HOH . K 5 HOH A 9 409 1 HOH HOH . K 5 HOH A 10 410 111 HOH HOH . K 5 HOH A 11 411 45 HOH HOH . K 5 HOH A 12 412 41 HOH HOH . K 5 HOH A 13 413 70 HOH HOH . K 5 HOH A 14 414 52 HOH HOH . K 5 HOH A 15 415 7 HOH HOH . K 5 HOH A 16 416 99 HOH HOH . K 5 HOH A 17 417 11 HOH HOH . K 5 HOH A 18 418 3 HOH HOH . K 5 HOH A 19 419 79 HOH HOH . K 5 HOH A 20 420 109 HOH HOH . K 5 HOH A 21 421 23 HOH HOH . K 5 HOH A 22 422 82 HOH HOH . K 5 HOH A 23 423 78 HOH HOH . K 5 HOH A 24 424 68 HOH HOH . K 5 HOH A 25 425 32 HOH HOH . K 5 HOH A 26 426 8 HOH HOH . K 5 HOH A 27 427 108 HOH HOH . K 5 HOH A 28 428 44 HOH HOH . K 5 HOH A 29 429 76 HOH HOH . K 5 HOH A 30 430 58 HOH HOH . K 5 HOH A 31 431 92 HOH HOH . K 5 HOH A 32 432 53 HOH HOH . K 5 HOH A 33 433 46 HOH HOH . K 5 HOH A 34 434 26 HOH HOH . K 5 HOH A 35 435 31 HOH HOH . K 5 HOH A 36 436 14 HOH HOH . K 5 HOH A 37 437 60 HOH HOH . K 5 HOH A 38 438 49 HOH HOH . K 5 HOH A 39 439 59 HOH HOH . K 5 HOH A 40 440 104 HOH HOH . K 5 HOH A 41 441 36 HOH HOH . K 5 HOH A 42 442 72 HOH HOH . K 5 HOH A 43 443 71 HOH HOH . K 5 HOH A 44 444 27 HOH HOH . K 5 HOH A 45 445 64 HOH HOH . K 5 HOH A 46 446 91 HOH HOH . K 5 HOH A 47 447 90 HOH HOH . K 5 HOH A 48 448 86 HOH HOH . K 5 HOH A 49 449 95 HOH HOH . K 5 HOH A 50 450 74 HOH HOH . L 5 HOH B 1 401 80 HOH HOH . L 5 HOH B 2 402 12 HOH HOH . L 5 HOH B 3 403 96 HOH HOH . L 5 HOH B 4 404 38 HOH HOH . L 5 HOH B 5 405 15 HOH HOH . L 5 HOH B 6 406 97 HOH HOH . L 5 HOH B 7 407 25 HOH HOH . L 5 HOH B 8 408 56 HOH HOH . L 5 HOH B 9 409 37 HOH HOH . L 5 HOH B 10 410 57 HOH HOH . L 5 HOH B 11 411 10 HOH HOH . L 5 HOH B 12 412 24 HOH HOH . L 5 HOH B 13 413 50 HOH HOH . L 5 HOH B 14 414 22 HOH HOH . L 5 HOH B 15 415 4 HOH HOH . L 5 HOH B 16 416 18 HOH HOH . L 5 HOH B 17 417 33 HOH HOH . L 5 HOH B 18 418 85 HOH HOH . L 5 HOH B 19 419 17 HOH HOH . L 5 HOH B 20 420 84 HOH HOH . L 5 HOH B 21 421 100 HOH HOH . L 5 HOH B 22 422 28 HOH HOH . L 5 HOH B 23 423 75 HOH HOH . L 5 HOH B 24 424 43 HOH HOH . L 5 HOH B 25 425 89 HOH HOH . L 5 HOH B 26 426 54 HOH HOH . L 5 HOH B 27 427 112 HOH HOH . L 5 HOH B 28 428 30 HOH HOH . L 5 HOH B 29 429 35 HOH HOH . L 5 HOH B 30 430 110 HOH HOH . L 5 HOH B 31 431 40 HOH HOH . L 5 HOH B 32 432 20 HOH HOH . L 5 HOH B 33 433 5 HOH HOH . L 5 HOH B 34 434 9 HOH HOH . L 5 HOH B 35 435 63 HOH HOH . L 5 HOH B 36 436 6 HOH HOH . L 5 HOH B 37 437 94 HOH HOH . L 5 HOH B 38 438 19 HOH HOH . L 5 HOH B 39 439 81 HOH HOH . L 5 HOH B 40 440 34 HOH HOH . L 5 HOH B 41 441 65 HOH HOH . L 5 HOH B 42 442 42 HOH HOH . L 5 HOH B 43 443 47 HOH HOH . L 5 HOH B 44 444 39 HOH HOH . L 5 HOH B 45 445 101 HOH HOH . L 5 HOH B 46 446 13 HOH HOH . L 5 HOH B 47 447 106 HOH HOH . L 5 HOH B 48 448 29 HOH HOH . L 5 HOH B 49 449 88 HOH HOH . L 5 HOH B 50 450 61 HOH HOH . L 5 HOH B 51 451 105 HOH HOH . L 5 HOH B 52 452 48 HOH HOH . L 5 HOH B 53 453 87 HOH HOH . L 5 HOH B 54 454 73 HOH HOH . L 5 HOH B 55 455 21 HOH HOH . L 5 HOH B 56 456 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . F 4 12.288 21.583 -5.163 1 46.93 ? C FMT 304 A 1 HETATM 2 O O1 FMT . . . F 4 12.556 20.794 -6.094 1 46.86 ? O1 FMT 304 A 1 HETATM 3 O O2 FMT . . . F 4 12.511 21.328 -3.946 1 42.11 ? O2 FMT 304 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 60 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 963 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 3 #