data_8HY3
#
_model_server_result.job_id            ervwI44zfq-XupDTlyQ47w 
_model_server_result.datetime_utc      '2025-01-16 00:09:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    8HY3 
#
_exptl.entry_id    8HY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.226 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-methyl-1-(phenylmethyl)imidazole 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HY3 
_cell.length_a            273.952 
_cell.length_b            273.952 
_cell.length_c            273.952 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        210 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 127 A ASP 159 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc2 A OE1 GLU 170 A GLU 202 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc3 A OE2 GLU 170 A GLU 202 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc4 A NE2 HIS 298 A HIS 330 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc5 B ZN ZN . A ZN 401 1_555 C N04 4Q8 . A 4Q8 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'C11 H12 N2' 
_chem_comp.formula_weight    172.226 
_chem_comp.id                4Q8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-methyl-1-(phenylmethyl)imidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C03 N04 4Q8 sing 1 n y 
C03 C02 4Q8 doub 2 n y 
N04 C05 4Q8 doub 3 n y 
C02 C01 4Q8 sing 4 n n 
C02 N06 4Q8 sing 5 n y 
C05 N06 4Q8 sing 6 n y 
N06 C07 4Q8 sing 7 n n 
C07 C08 4Q8 sing 8 n n 
C08 C13 4Q8 doub 9 n y 
C08 C09 4Q8 sing 10 n y 
C13 C12 4Q8 sing 11 n y 
C09 C10 4Q8 doub 12 n y 
C12 C11 4Q8 doub 13 n y 
C10 C11 4Q8 sing 14 n y 
C07 H071 4Q8 sing 15 n n 
C07 H072 4Q8 sing 16 n n 
C09 H091 4Q8 sing 17 n n 
C10 H101 4Q8 sing 18 n n 
C11 H111 4Q8 sing 19 n n 
C12 H121 4Q8 sing 20 n n 
C13 H131 4Q8 sing 21 n n 
C01 H013 4Q8 sing 22 n n 
C01 H012 4Q8 sing 23 n n 
C01 H011 4Q8 sing 24 n n 
C03 H031 4Q8 sing 25 n n 
C05 H051 4Q8 sing 26 n n 
#
_atom_sites.entry_id                     8HY3 
_atom_sites.fract_transf_matrix[1][1]    0.00365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00365 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 401 ZN ZN . 
C 3 4Q8 A 1 402 501 4Q8 043 . 
D 4 CO2 A 1 403 601 CO2 CO2 . 
E 5 GOL A 1 404 101 GOL GOL . 
F 6 HOH A 1 501 38 HOH HOH . 
F 6 HOH A 2 502 26 HOH HOH . 
F 6 HOH A 3 503 21 HOH HOH . 
F 6 HOH A 4 504 27 HOH HOH . 
F 6 HOH A 5 505 29 HOH HOH . 
F 6 HOH A 6 506 42 HOH HOH . 
F 6 HOH A 7 507 9 HOH HOH . 
F 6 HOH A 8 508 33 HOH HOH . 
F 6 HOH A 9 509 41 HOH HOH . 
F 6 HOH A 10 510 18 HOH HOH . 
F 6 HOH A 11 511 34 HOH HOH . 
F 6 HOH A 12 512 23 HOH HOH . 
F 6 HOH A 13 513 22 HOH HOH . 
F 6 HOH A 14 514 1 HOH HOH . 
F 6 HOH A 15 515 2 HOH HOH . 
F 6 HOH A 16 516 30 HOH HOH . 
F 6 HOH A 17 517 5 HOH HOH . 
F 6 HOH A 18 518 28 HOH HOH . 
F 6 HOH A 19 519 3 HOH HOH . 
F 6 HOH A 20 520 32 HOH HOH . 
F 6 HOH A 21 521 39 HOH HOH . 
F 6 HOH A 22 522 19 HOH HOH . 
F 6 HOH A 23 523 14 HOH HOH . 
F 6 HOH A 24 524 20 HOH HOH . 
F 6 HOH A 25 525 13 HOH HOH . 
F 6 HOH A 26 526 6 HOH HOH . 
F 6 HOH A 27 527 7 HOH HOH . 
F 6 HOH A 28 528 37 HOH HOH . 
F 6 HOH A 29 529 10 HOH HOH . 
F 6 HOH A 30 530 11 HOH HOH . 
F 6 HOH A 31 531 31 HOH HOH . 
F 6 HOH A 32 532 12 HOH HOH . 
F 6 HOH A 33 533 36 HOH HOH . 
F 6 HOH A 34 534 4 HOH HOH . 
F 6 HOH A 35 535 35 HOH HOH . 
F 6 HOH A 36 536 17 HOH HOH . 
F 6 HOH A 37 537 15 HOH HOH . 
F 6 HOH A 38 538 44 HOH HOH . 
F 6 HOH A 39 539 16 HOH HOH . 
F 6 HOH A 40 540 24 HOH HOH . 
F 6 HOH A 41 541 8 HOH HOH . 
F 6 HOH A 42 542 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 4Q8 . . . C 3 -30.827 -26.483 9.537 1 62.21 ? C02 4Q8 402 A 1 
HETATM 2 C C07 4Q8 . . . C 3 -31.801 -25.99 11.805 1 59.31 ? C07 4Q8 402 A 1 
HETATM 3 C C09 4Q8 . . . C 3 -30.368 -24.061 12.634 1 62.15 ? C09 4Q8 402 A 1 
HETATM 4 C C10 4Q8 . . . C 3 -30.207 -22.746 13.023 1 62.22 ? C10 4Q8 402 A 1 
HETATM 5 C C11 4Q8 . . . C 3 -31.277 -21.885 13.045 1 68.67 ? C11 4Q8 402 A 1 
HETATM 6 C C12 4Q8 . . . C 3 -32.538 -22.348 12.662 1 71.96 ? C12 4Q8 402 A 1 
HETATM 7 C C13 4Q8 . . . C 3 -32.694 -23.662 12.277 1 66.4 ? C13 4Q8 402 A 1 
HETATM 8 C C01 4Q8 . . . C 3 -29.339 -26.609 9.861 1 60.83 ? C01 4Q8 402 A 1 
HETATM 9 C C03 4Q8 . . . C 3 -31.333 -26.631 8.298 1 59.47 ? C03 4Q8 402 A 1 
HETATM 10 N N04 4Q8 . . . C 3 -32.661 -26.478 8.339 1 57.25 ? N04 4Q8 402 A 1 
HETATM 11 C C05 4Q8 . . . C 3 -32.976 -26.195 9.617 1 62.22 ? C05 4Q8 402 A 1 
HETATM 12 N N06 4Q8 . . . C 3 -31.842 -26.216 10.351 1 65.58 ? N06 4Q8 402 A 1 
HETATM 13 C C08 4Q8 . . . C 3 -31.61 -24.522 12.241 1 62.57 ? C08 4Q8 402 A 1 
HETATM 14 H H071 4Q8 . . . C 3 -31.072 -26.513 12.172 1 71.18 ? H071 4Q8 402 A 1 
HETATM 15 H H072 4Q8 . . . C 3 -32.632 -26.314 12.186 1 71.18 ? H072 4Q8 402 A 1 
HETATM 16 H H091 4Q8 . . . C 3 -29.634 -24.632 12.618 1 74.58 ? H091 4Q8 402 A 1 
HETATM 17 H H101 4Q8 . . . C 3 -29.367 -22.441 13.278 1 74.67 ? H101 4Q8 402 A 1 
HETATM 18 H H111 4Q8 . . . C 3 -31.164 -21.002 13.314 1 82.41 ? H111 4Q8 402 A 1 
HETATM 19 H H121 4Q8 . . . C 3 -33.271 -21.775 12.675 1 86.35 ? H121 4Q8 402 A 1 
HETATM 20 H H131 4Q8 . . . C 3 -33.532 -23.968 12.015 1 79.68 ? H131 4Q8 402 A 1 
HETATM 21 H H013 4Q8 . . . C 3 -28.827 -26.052 9.253 1 73 ? H013 4Q8 402 A 1 
HETATM 22 H H012 4Q8 . . . C 3 -29.063 -27.534 9.761 1 73 ? H012 4Q8 402 A 1 
HETATM 23 H H011 4Q8 . . . C 3 -29.18 -26.322 10.774 1 73 ? H011 4Q8 402 A 1 
HETATM 24 H H031 4Q8 . . . C 3 -30.837 -26.823 7.535 1 71.37 ? H031 4Q8 402 A 1 
HETATM 25 H H051 4Q8 . . . C 3 -33.833 -26.048 9.945 1 74.67 ? H051 4Q8 402 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#