data_8HY3
#
_model_server_result.job_id            MFzoh3s_rPTrRYYIDW1FGw 
_model_server_result.datetime_utc      '2025-01-16 00:03:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
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_entry.id    8HY3 
#
_exptl.entry_id    8HY3 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HY3 
_cell.length_a            273.952 
_cell.length_b            273.952 
_cell.length_c            273.952 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        210 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 41 3 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 127 A ASP 159 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc2 A OE1 GLU 170 A GLU 202 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc3 A OE2 GLU 170 A GLU 202 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc4 A NE2 HIS 298 A HIS 330 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc5 B ZN ZN . A ZN 401 1_555 C N04 4Q8 . A 4Q8 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     8HY3 
_atom_sites.fract_transf_matrix[1][1]    0.00365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00365 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 401 ZN ZN . 
C 3 4Q8 A 1 402 501 4Q8 043 . 
D 4 CO2 A 1 403 601 CO2 CO2 . 
E 5 GOL A 1 404 101 GOL GOL . 
F 6 HOH A 1 501 38 HOH HOH . 
F 6 HOH A 2 502 26 HOH HOH . 
F 6 HOH A 3 503 21 HOH HOH . 
F 6 HOH A 4 504 27 HOH HOH . 
F 6 HOH A 5 505 29 HOH HOH . 
F 6 HOH A 6 506 42 HOH HOH . 
F 6 HOH A 7 507 9 HOH HOH . 
F 6 HOH A 8 508 33 HOH HOH . 
F 6 HOH A 9 509 41 HOH HOH . 
F 6 HOH A 10 510 18 HOH HOH . 
F 6 HOH A 11 511 34 HOH HOH . 
F 6 HOH A 12 512 23 HOH HOH . 
F 6 HOH A 13 513 22 HOH HOH . 
F 6 HOH A 14 514 1 HOH HOH . 
F 6 HOH A 15 515 2 HOH HOH . 
F 6 HOH A 16 516 30 HOH HOH . 
F 6 HOH A 17 517 5 HOH HOH . 
F 6 HOH A 18 518 28 HOH HOH . 
F 6 HOH A 19 519 3 HOH HOH . 
F 6 HOH A 20 520 32 HOH HOH . 
F 6 HOH A 21 521 39 HOH HOH . 
F 6 HOH A 22 522 19 HOH HOH . 
F 6 HOH A 23 523 14 HOH HOH . 
F 6 HOH A 24 524 20 HOH HOH . 
F 6 HOH A 25 525 13 HOH HOH . 
F 6 HOH A 26 526 6 HOH HOH . 
F 6 HOH A 27 527 7 HOH HOH . 
F 6 HOH A 28 528 37 HOH HOH . 
F 6 HOH A 29 529 10 HOH HOH . 
F 6 HOH A 30 530 11 HOH HOH . 
F 6 HOH A 31 531 31 HOH HOH . 
F 6 HOH A 32 532 12 HOH HOH . 
F 6 HOH A 33 533 36 HOH HOH . 
F 6 HOH A 34 534 4 HOH HOH . 
F 6 HOH A 35 535 35 HOH HOH . 
F 6 HOH A 36 536 17 HOH HOH . 
F 6 HOH A 37 537 15 HOH HOH . 
F 6 HOH A 38 538 44 HOH HOH . 
F 6 HOH A 39 539 16 HOH HOH . 
F 6 HOH A 40 540 24 HOH HOH . 
F 6 HOH A 41 541 8 HOH HOH . 
F 6 HOH A 42 542 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 -33.411 -22.344 16.93 1 89.08 ? C1 GOL 404 A 1 
HETATM 2 O O1 GOL . . . E 5 -33.973 -21.054 16.992 1 99.09 ? O1 GOL 404 A 1 
HETATM 3 C C2 GOL . . . E 5 -31.973 -22.228 16.437 1 96.38 ? C2 GOL 404 A 1 
HETATM 4 O O2 GOL . . . E 5 -31.562 -20.86 16.546 1 105.36 ? O2 GOL 404 A 1 
HETATM 5 C C3 GOL . . . E 5 -31.058 -23.228 17.165 1 97.02 ? C3 GOL 404 A 1 
HETATM 6 O O3 GOL . . . E 5 -31.03 -22.942 18.554 1 106.96 ? O3 GOL 404 A 1 
HETATM 7 H H11 GOL . . . E 5 -33.43 -22.805 17.917 1 106.9 ? H11 GOL 404 A 1 
HETATM 8 H H12 GOL . . . E 5 -33.989 -22.968 16.248 1 106.9 ? H12 GOL 404 A 1 
HETATM 9 H HO1 GOL . . . E 5 -34.917 -21.121 17.245 1 118.91 ? HO1 GOL 404 A 1 
HETATM 10 H H2 GOL . . . E 5 -31.972 -22.502 15.382 1 115.65 ? H2 GOL 404 A 1 
HETATM 11 H HO2 GOL . . . E 5 -31.535 -20.601 17.491 1 126.43 ? HO2 GOL 404 A 1 
HETATM 12 H H31 GOL . . . E 5 -31.424 -24.243 17.007 1 116.43 ? H31 GOL 404 A 1 
HETATM 13 H H32 GOL . . . E 5 -30.049 -23.166 16.757 1 116.43 ? H32 GOL 404 A 1 
HETATM 14 H HO3 GOL . . . E 5 -30.421 -23.565 19.003 1 128.35 ? HO3 GOL 404 A 1 
#
_model_server_stats.io_time_ms              133 
_model_server_stats.parse_time_ms           215 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#