data_8HY5 # _model_server_result.job_id pqqBKbcnPNnUF_CoksGplA _model_server_result.datetime_utc '2024-11-24 08:37:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hy5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 8HY5 # _exptl.entry_id 8HY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.46 _cell.angle_gamma 90 _cell.entry_id 8HY5 _cell.length_a 43.756 _cell.length_b 74.164 _cell.length_c 99.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O LEU 145 B LEU 122 1_555 H NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc2 B O PHE 148 B PHE 125 1_555 H NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc3 B O TYR 151 B TYR 128 1_555 H NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 70 n n C O2 BEZ sing 71 n n C C1 BEZ sing 72 n n O2 HO2 BEZ sing 73 n n C1 C2 BEZ doub 74 n y C1 C6 BEZ sing 75 n y C2 C3 BEZ sing 76 n y C2 H2 BEZ sing 77 n n C3 C4 BEZ doub 78 n y C3 H3 BEZ sing 79 n n C4 C5 BEZ sing 80 n y C4 H4 BEZ sing 81 n n C5 C6 BEZ doub 82 n y C5 H5 BEZ sing 83 n n C6 H6 BEZ sing 84 n n # _atom_sites.entry_id 8HY5 _atom_sites.fract_transf_matrix[1][1] 0.022854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 401 401 FAD FAD . D 3 BEZ A 1 402 402 BEZ BEZ . E 4 EDO A 1 403 403 EDO EDO . F 2 FAD B 1 401 401 FAD FAD . G 3 BEZ B 1 402 402 BEZ BEZ . H 5 NA B 1 403 1 NA NA . I 6 HOH A 1 501 98 HOH HOH . I 6 HOH A 2 502 147 HOH HOH . I 6 HOH A 3 503 66 HOH HOH . I 6 HOH A 4 504 145 HOH HOH . I 6 HOH A 5 505 102 HOH HOH . I 6 HOH A 6 506 112 HOH HOH . I 6 HOH A 7 507 70 HOH HOH . I 6 HOH A 8 508 109 HOH HOH . I 6 HOH A 9 509 92 HOH HOH . I 6 HOH A 10 510 106 HOH HOH . I 6 HOH A 11 511 24 HOH HOH . I 6 HOH A 12 512 4 HOH HOH . I 6 HOH A 13 513 134 HOH HOH . I 6 HOH A 14 514 71 HOH HOH . I 6 HOH A 15 515 34 HOH HOH . I 6 HOH A 16 516 55 HOH HOH . I 6 HOH A 17 517 118 HOH HOH . I 6 HOH A 18 518 108 HOH HOH . I 6 HOH A 19 519 43 HOH HOH . I 6 HOH A 20 520 15 HOH HOH . I 6 HOH A 21 521 73 HOH HOH . I 6 HOH A 22 522 59 HOH HOH . I 6 HOH A 23 523 69 HOH HOH . I 6 HOH A 24 524 1 HOH HOH . I 6 HOH A 25 525 17 HOH HOH . I 6 HOH A 26 526 99 HOH HOH . I 6 HOH A 27 527 90 HOH HOH . I 6 HOH A 28 528 54 HOH HOH . I 6 HOH A 29 529 28 HOH HOH . I 6 HOH A 30 530 6 HOH HOH . I 6 HOH A 31 531 116 HOH HOH . I 6 HOH A 32 532 56 HOH HOH . I 6 HOH A 33 533 113 HOH HOH . I 6 HOH A 34 534 123 HOH HOH . I 6 HOH A 35 535 46 HOH HOH . I 6 HOH A 36 536 88 HOH HOH . I 6 HOH A 37 537 64 HOH HOH . I 6 HOH A 38 538 91 HOH HOH . I 6 HOH A 39 539 30 HOH HOH . I 6 HOH A 40 540 60 HOH HOH . I 6 HOH A 41 541 101 HOH HOH . I 6 HOH A 42 542 100 HOH HOH . I 6 HOH A 43 543 32 HOH HOH . I 6 HOH A 44 544 110 HOH HOH . I 6 HOH A 45 545 25 HOH HOH . I 6 HOH A 46 546 62 HOH HOH . I 6 HOH A 47 547 104 HOH HOH . I 6 HOH A 48 548 137 HOH HOH . I 6 HOH A 49 549 40 HOH HOH . I 6 HOH A 50 550 68 HOH HOH . I 6 HOH A 51 551 121 HOH HOH . I 6 HOH A 52 552 146 HOH HOH . I 6 HOH A 53 553 20 HOH HOH . I 6 HOH A 54 554 27 HOH HOH . I 6 HOH A 55 555 119 HOH HOH . I 6 HOH A 56 556 49 HOH HOH . I 6 HOH A 57 557 2 HOH HOH . I 6 HOH A 58 558 96 HOH HOH . I 6 HOH A 59 559 23 HOH HOH . I 6 HOH A 60 560 35 HOH HOH . I 6 HOH A 61 561 95 HOH HOH . I 6 HOH A 62 562 63 HOH HOH . I 6 HOH A 63 563 135 HOH HOH . I 6 HOH A 64 564 122 HOH HOH . I 6 HOH A 65 565 57 HOH HOH . I 6 HOH A 66 566 48 HOH HOH . I 6 HOH A 67 567 114 HOH HOH . I 6 HOH A 68 568 53 HOH HOH . I 6 HOH A 69 569 124 HOH HOH . I 6 HOH A 70 570 50 HOH HOH . I 6 HOH A 71 571 141 HOH HOH . I 6 HOH A 72 572 82 HOH HOH . I 6 HOH A 73 573 131 HOH HOH . I 6 HOH A 74 574 83 HOH HOH . I 6 HOH A 75 575 79 HOH HOH . I 6 HOH A 76 576 107 HOH HOH . I 6 HOH A 77 577 126 HOH HOH . I 6 HOH A 78 578 115 HOH HOH . J 6 HOH B 1 501 150 HOH HOH . J 6 HOH B 2 502 155 HOH HOH . J 6 HOH B 3 503 7 HOH HOH . J 6 HOH B 4 504 13 HOH HOH . J 6 HOH B 5 505 47 HOH HOH . J 6 HOH B 6 506 149 HOH HOH . J 6 HOH B 7 507 14 HOH HOH . J 6 HOH B 8 508 18 HOH HOH . J 6 HOH B 9 509 78 HOH HOH . J 6 HOH B 10 510 81 HOH HOH . J 6 HOH B 11 511 11 HOH HOH . J 6 HOH B 12 512 94 HOH HOH . J 6 HOH B 13 513 132 HOH HOH . J 6 HOH B 14 514 75 HOH HOH . J 6 HOH B 15 515 29 HOH HOH . J 6 HOH B 16 516 22 HOH HOH . J 6 HOH B 17 517 36 HOH HOH . J 6 HOH B 18 518 105 HOH HOH . J 6 HOH B 19 519 143 HOH HOH . J 6 HOH B 20 520 72 HOH HOH . J 6 HOH B 21 521 152 HOH HOH . J 6 HOH B 22 522 8 HOH HOH . J 6 HOH B 23 523 85 HOH HOH . J 6 HOH B 24 524 89 HOH HOH . J 6 HOH B 25 525 77 HOH HOH . J 6 HOH B 26 526 93 HOH HOH . J 6 HOH B 27 527 9 HOH HOH . J 6 HOH B 28 528 129 HOH HOH . J 6 HOH B 29 529 87 HOH HOH . J 6 HOH B 30 530 74 HOH HOH . J 6 HOH B 31 531 125 HOH HOH . J 6 HOH B 32 532 140 HOH HOH . J 6 HOH B 33 533 12 HOH HOH . J 6 HOH B 34 534 111 HOH HOH . J 6 HOH B 35 535 26 HOH HOH . J 6 HOH B 36 536 84 HOH HOH . J 6 HOH B 37 537 41 HOH HOH . J 6 HOH B 38 538 42 HOH HOH . J 6 HOH B 39 539 45 HOH HOH . J 6 HOH B 40 540 21 HOH HOH . J 6 HOH B 41 541 5 HOH HOH . J 6 HOH B 42 542 142 HOH HOH . J 6 HOH B 43 543 52 HOH HOH . J 6 HOH B 44 544 38 HOH HOH . J 6 HOH B 45 545 61 HOH HOH . J 6 HOH B 46 546 33 HOH HOH . J 6 HOH B 47 547 133 HOH HOH . J 6 HOH B 48 548 3 HOH HOH . J 6 HOH B 49 549 44 HOH HOH . J 6 HOH B 50 550 127 HOH HOH . J 6 HOH B 51 551 16 HOH HOH . J 6 HOH B 52 552 130 HOH HOH . J 6 HOH B 53 553 37 HOH HOH . J 6 HOH B 54 554 19 HOH HOH . J 6 HOH B 55 555 76 HOH HOH . J 6 HOH B 56 556 65 HOH HOH . J 6 HOH B 57 557 58 HOH HOH . J 6 HOH B 58 558 67 HOH HOH . J 6 HOH B 59 559 86 HOH HOH . J 6 HOH B 60 560 39 HOH HOH . J 6 HOH B 61 561 10 HOH HOH . J 6 HOH B 62 562 128 HOH HOH . J 6 HOH B 63 563 31 HOH HOH . J 6 HOH B 64 564 139 HOH HOH . J 6 HOH B 65 565 97 HOH HOH . J 6 HOH B 66 566 80 HOH HOH . J 6 HOH B 67 567 120 HOH HOH . J 6 HOH B 68 568 153 HOH HOH . J 6 HOH B 69 569 103 HOH HOH . J 6 HOH B 70 570 136 HOH HOH . J 6 HOH B 71 571 138 HOH HOH . J 6 HOH B 72 572 51 HOH HOH . J 6 HOH B 73 573 117 HOH HOH . J 6 HOH B 74 574 154 HOH HOH . J 6 HOH B 75 575 151 HOH HOH . J 6 HOH B 76 576 148 HOH HOH . J 6 HOH B 77 577 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . G 3 -16.372 -3.61 -61.229 0.84 42.58 ? C BEZ 402 B 1 HETATM 2 O O1 BEZ . . . G 3 -16.028 -3.762 -62.421 0.84 40.92 ? O1 BEZ 402 B 1 HETATM 3 O O2 BEZ . . . G 3 -17.238 -2.754 -60.94 0.84 46.91 ? O2 BEZ 402 B 1 HETATM 4 C C1 BEZ . . . G 3 -15.754 -4.435 -60.141 0.84 42.29 ? C1 BEZ 402 B 1 HETATM 5 C C2 BEZ . . . G 3 -15.934 -4.065 -58.816 0.84 38.84 ? C2 BEZ 402 B 1 HETATM 6 C C3 BEZ . . . G 3 -15.366 -4.829 -57.802 0.84 38.04 ? C3 BEZ 402 B 1 HETATM 7 C C4 BEZ . . . G 3 -14.617 -5.96 -58.108 0.84 37.78 ? C4 BEZ 402 B 1 HETATM 8 C C5 BEZ . . . G 3 -14.438 -6.33 -59.436 0.84 43.09 ? C5 BEZ 402 B 1 HETATM 9 C C6 BEZ . . . G 3 -15.008 -5.566 -60.449 0.84 41.77 ? C6 BEZ 402 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #