data_8HYB # _model_server_result.job_id KdQNF4AlqakuiMCE1D3xcw _model_server_result.datetime_utc '2024-11-13 13:02:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 8HYB # _exptl.entry_id 8HYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.97 _cell.angle_gamma 90 _cell.entry_id 8HYB _cell.length_a 48.899 _cell.length_b 201.103 _cell.length_c 52.319 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,V 1 1 B,K,L,M,W 2 1 C,N,O,P,Q,X 3 1 D,R,S,T,U,Y 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 75 A HIS 77 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A ND1 HIS 77 A HIS 79 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc3 A OD2 ASP 79 A ASP 81 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 A NE2 HIS 137 A HIS 139 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc5 A SG CYS 156 A CYS 158 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc6 A NE2 HIS 195 A HIS 197 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 E ZN ZN . A ZN 301 1_555 V O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc8 F ZN ZN . A ZN 302 1_555 G O03 5ZX . A 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc9 F ZN ZN . A ZN 302 1_555 G N17 5ZX . A 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 F ZN ZN . A ZN 302 1_555 V O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 B NE2 HIS 75 B HIS 77 1_555 K ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc12 B ND1 HIS 77 B HIS 79 1_555 K ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc13 B OD2 ASP 79 B ASP 81 1_555 L ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc14 B NE2 HIS 137 B HIS 139 1_555 K ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc15 B SG CYS 156 B CYS 158 1_555 L ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc16 B NE2 HIS 195 B HIS 197 1_555 L ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc17 K ZN ZN . B ZN 301 1_555 W O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc18 L ZN ZN . B ZN 302 1_555 M N17 5ZX . B 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc19 L ZN ZN . B ZN 302 1_555 M O01 5ZX . B 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc20 L ZN ZN . B ZN 302 1_555 W O HOH . B HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc21 C NE2 HIS 75 C HIS 77 1_555 N ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc22 C ND1 HIS 77 C HIS 79 1_555 N ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc23 C OD2 ASP 79 C ASP 81 1_555 O ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc24 C NE2 HIS 137 C HIS 139 1_555 N ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc25 C SG CYS 156 C CYS 158 1_555 O ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc26 C NE2 HIS 195 C HIS 197 1_555 O ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc27 N ZN ZN . C ZN 301 1_555 X O HOH . C HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc28 O ZN ZN . C ZN 302 1_555 P O01 5ZX . C 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc29 O ZN ZN . C ZN 302 1_555 P N17 5ZX . C 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc30 O ZN ZN . C ZN 302 1_555 X O HOH . C HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc31 D NE2 HIS 75 D HIS 77 1_555 R ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc32 D ND1 HIS 77 D HIS 79 1_555 R ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc33 D OD2 ASP 79 D ASP 81 1_555 S ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc34 D NE2 HIS 137 D HIS 139 1_555 R ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc35 D SG CYS 156 D CYS 158 1_555 S ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc36 D NE2 HIS 195 D HIS 197 1_555 S ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc37 R ZN ZN . D ZN 301 1_555 Y O HOH . D HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc38 S ZN ZN . D ZN 302 1_555 T O01 5ZX . D 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc39 S ZN ZN . D ZN 302 1_555 T N17 5ZX . D 5ZX 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc40 S ZN ZN . D ZN 302 1_555 Y O HOH . D HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8HYB _atom_sites.fract_transf_matrix[1][1] 0.02045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 301 301 ZN ZN . F 2 ZN A 1 302 302 ZN ZN . G 3 5ZX A 1 303 401 5ZX 441 . H 4 ACT A 1 304 302 ACT ACT . I 4 ACT A 1 305 303 ACT ACT . J 4 ACT A 1 306 304 ACT ACT . K 2 ZN B 1 301 301 ZN ZN . L 2 ZN B 1 302 302 ZN ZN . M 3 5ZX B 1 303 401 5ZX 441 . N 2 ZN C 1 301 301 ZN ZN . O 2 ZN C 1 302 302 ZN ZN . P 3 5ZX C 1 303 401 5ZX 441 . Q 4 ACT C 1 304 305 ACT ACT . R 2 ZN D 1 301 301 ZN ZN . S 2 ZN D 1 302 302 ZN ZN . T 3 5ZX D 1 303 401 5ZX 441 . U 5 SO4 D 1 304 301 SO4 SO4 . V 6 HOH A 1 401 24 HOH HOH . V 6 HOH A 2 402 185 HOH HOH . V 6 HOH A 3 403 47 HOH HOH . V 6 HOH A 4 404 198 HOH HOH . V 6 HOH A 5 405 224 HOH HOH . V 6 HOH A 6 406 99 HOH HOH . V 6 HOH A 7 407 161 HOH HOH . V 6 HOH A 8 408 216 HOH HOH . V 6 HOH A 9 409 22 HOH HOH . V 6 HOH A 10 410 8 HOH HOH . V 6 HOH A 11 411 98 HOH HOH . V 6 HOH A 12 412 163 HOH HOH . V 6 HOH A 13 413 18 HOH HOH . V 6 HOH A 14 414 172 HOH HOH . V 6 HOH A 15 415 170 HOH HOH . V 6 HOH A 16 416 164 HOH HOH . V 6 HOH A 17 417 186 HOH HOH . V 6 HOH A 18 418 65 HOH HOH . V 6 HOH A 19 419 220 HOH HOH . V 6 HOH A 20 420 45 HOH HOH . V 6 HOH A 21 421 41 HOH HOH . V 6 HOH A 22 422 12 HOH HOH . V 6 HOH A 23 423 191 HOH HOH . V 6 HOH A 24 424 176 HOH HOH . V 6 HOH A 25 425 197 HOH HOH . V 6 HOH A 26 426 58 HOH HOH . V 6 HOH A 27 427 43 HOH HOH . V 6 HOH A 28 428 141 HOH HOH . V 6 HOH A 29 429 204 HOH HOH . V 6 HOH A 30 430 50 HOH HOH . V 6 HOH A 31 431 94 HOH HOH . V 6 HOH A 32 432 60 HOH HOH . V 6 HOH A 33 433 162 HOH HOH . V 6 HOH A 34 434 242 HOH HOH . V 6 HOH A 35 435 178 HOH HOH . V 6 HOH A 36 436 234 HOH HOH . V 6 HOH A 37 437 86 HOH HOH . W 6 HOH B 1 401 169 HOH HOH . W 6 HOH B 2 402 229 HOH HOH . W 6 HOH B 3 403 184 HOH HOH . W 6 HOH B 4 404 27 HOH HOH . W 6 HOH B 5 405 66 HOH HOH . W 6 HOH B 6 406 196 HOH HOH . W 6 HOH B 7 407 166 HOH HOH . W 6 HOH B 8 408 171 HOH HOH . W 6 HOH B 9 409 173 HOH HOH . W 6 HOH B 10 410 201 HOH HOH . W 6 HOH B 11 411 81 HOH HOH . W 6 HOH B 12 412 135 HOH HOH . W 6 HOH B 13 413 145 HOH HOH . W 6 HOH B 14 414 221 HOH HOH . W 6 HOH B 15 415 248 HOH HOH . W 6 HOH B 16 416 70 HOH HOH . W 6 HOH B 17 417 14 HOH HOH . W 6 HOH B 18 418 210 HOH HOH . W 6 HOH B 19 419 42 HOH HOH . W 6 HOH B 20 420 243 HOH HOH . W 6 HOH B 21 421 228 HOH HOH . W 6 HOH B 22 422 39 HOH HOH . W 6 HOH B 23 423 215 HOH HOH . W 6 HOH B 24 424 226 HOH HOH . W 6 HOH B 25 425 181 HOH HOH . W 6 HOH B 26 426 251 HOH HOH . W 6 HOH B 27 427 57 HOH HOH . W 6 HOH B 28 428 207 HOH HOH . W 6 HOH B 29 429 156 HOH HOH . W 6 HOH B 30 430 160 HOH HOH . W 6 HOH B 31 431 200 HOH HOH . W 6 HOH B 32 432 35 HOH HOH . W 6 HOH B 33 433 231 HOH HOH . W 6 HOH B 34 434 101 HOH HOH . W 6 HOH B 35 435 230 HOH HOH . W 6 HOH B 36 436 236 HOH HOH . W 6 HOH B 37 437 52 HOH HOH . W 6 HOH B 38 438 218 HOH HOH . X 6 HOH C 1 401 177 HOH HOH . X 6 HOH C 2 402 38 HOH HOH . X 6 HOH C 3 403 155 HOH HOH . X 6 HOH C 4 404 175 HOH HOH . X 6 HOH C 5 405 64 HOH HOH . X 6 HOH C 6 406 158 HOH HOH . X 6 HOH C 7 407 67 HOH HOH . X 6 HOH C 8 408 75 HOH HOH . X 6 HOH C 9 409 188 HOH HOH . X 6 HOH C 10 410 63 HOH HOH . X 6 HOH C 11 411 46 HOH HOH . X 6 HOH C 12 412 71 HOH HOH . X 6 HOH C 13 413 95 HOH HOH . X 6 HOH C 14 414 213 HOH HOH . X 6 HOH C 15 415 125 HOH HOH . X 6 HOH C 16 416 214 HOH HOH . X 6 HOH C 17 417 199 HOH HOH . X 6 HOH C 18 418 212 HOH HOH . X 6 HOH C 19 419 239 HOH HOH . X 6 HOH C 20 420 89 HOH HOH . X 6 HOH C 21 421 211 HOH HOH . X 6 HOH C 22 422 53 HOH HOH . X 6 HOH C 23 423 241 HOH HOH . X 6 HOH C 24 424 142 HOH HOH . X 6 HOH C 25 425 219 HOH HOH . X 6 HOH C 26 426 13 HOH HOH . X 6 HOH C 27 427 15 HOH HOH . X 6 HOH C 28 428 104 HOH HOH . X 6 HOH C 29 429 195 HOH HOH . X 6 HOH C 30 430 133 HOH HOH . X 6 HOH C 31 431 103 HOH HOH . X 6 HOH C 32 432 122 HOH HOH . X 6 HOH C 33 433 235 HOH HOH . Y 6 HOH D 1 401 225 HOH HOH . Y 6 HOH D 2 402 111 HOH HOH . Y 6 HOH D 3 403 137 HOH HOH . Y 6 HOH D 4 404 190 HOH HOH . Y 6 HOH D 5 405 182 HOH HOH . Y 6 HOH D 6 406 206 HOH HOH . Y 6 HOH D 7 407 23 HOH HOH . Y 6 HOH D 8 408 238 HOH HOH . Y 6 HOH D 9 409 174 HOH HOH . Y 6 HOH D 10 410 61 HOH HOH . Y 6 HOH D 11 411 134 HOH HOH . Y 6 HOH D 12 412 20 HOH HOH . Y 6 HOH D 13 413 246 HOH HOH . Y 6 HOH D 14 414 165 HOH HOH . Y 6 HOH D 15 415 124 HOH HOH . Y 6 HOH D 16 416 6 HOH HOH . Y 6 HOH D 17 417 209 HOH HOH . Y 6 HOH D 18 418 222 HOH HOH . Y 6 HOH D 19 419 232 HOH HOH . Y 6 HOH D 20 420 217 HOH HOH . Y 6 HOH D 21 421 180 HOH HOH . Y 6 HOH D 22 422 208 HOH HOH . Y 6 HOH D 23 423 17 HOH HOH . Y 6 HOH D 24 424 93 HOH HOH . Y 6 HOH D 25 425 189 HOH HOH . Y 6 HOH D 26 426 193 HOH HOH . Y 6 HOH D 27 427 59 HOH HOH . Y 6 HOH D 28 428 1 HOH HOH . Y 6 HOH D 29 429 9 HOH HOH . Y 6 HOH D 30 430 123 HOH HOH . Y 6 HOH D 31 431 139 HOH HOH . Y 6 HOH D 32 432 227 HOH HOH . Y 6 HOH D 33 433 192 HOH HOH . Y 6 HOH D 34 434 205 HOH HOH . Y 6 HOH D 35 435 252 HOH HOH . Y 6 HOH D 36 436 168 HOH HOH . Y 6 HOH D 37 437 247 HOH HOH . Y 6 HOH D 38 438 194 HOH HOH . Y 6 HOH D 39 439 240 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 2 _atom_site.Cartn_x 133.807 _atom_site.Cartn_y 36.145 _atom_site.Cartn_z 98.162 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #