data_8HZR # _model_server_result.job_id ZQLuslrSpVztx2O-yk4_UQ _model_server_result.datetime_utc '2025-07-12 21:03:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8HZR # _exptl.entry_id 8HZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HZR _cell.length_a 68.028 _cell.length_b 102.316 _cell.length_c 103.299 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H34 F3 N5 O4' _chem_comp.formula_weight 501.542 _chem_comp.id 4WI _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C8 4WI doub 1 n n C8 N2 4WI sing 2 n n C8 C5 4WI sing 3 n n N2 C7 4WI sing 4 n n C4 C5 4WI sing 5 n n C4 C2 4WI sing 6 n n C5 C6 4WI sing 7 n n N5 C3 4WI doub 8 n n C3 C2 4WI sing 9 n n C7 C6 4WI sing 10 n n C2 N1 4WI sing 11 n n N1 C1 4WI sing 12 n n F1 C22 4WI sing 13 n n O3 C13 4WI doub 14 n n C1 C9 4WI sing 15 n n C1 O2 4WI doub 16 n n F3 C22 4WI sing 17 n n C23 C15 4WI sing 18 n n C22 F2 4WI sing 19 n n C22 C21 4WI sing 20 n n C9 N3 4WI sing 21 n n C9 C12 4WI sing 22 n n C13 N3 4WI sing 23 n n C13 C14 4WI sing 24 n n N4 C21 4WI sing 25 n n N4 C14 4WI sing 26 n n C19 C18 4WI sing 27 n n N3 C10 4WI sing 28 n n C21 O4 4WI doub 29 n n C12 C18 4WI sing 30 n n C12 C11 4WI sing 31 n n C14 C15 4WI sing 32 n n C15 C17 4WI sing 33 n n C15 C16 4WI sing 34 n n C18 C20 4WI sing 35 n n C18 C11 4WI sing 36 n n C10 C11 4WI sing 37 n n C3 H33 4WI sing 38 n n C6 H5 4WI sing 39 n n C6 H6 4WI sing 40 n n C7 H7 4WI sing 41 n n C7 H8 4WI sing 42 n n C10 H11 4WI sing 43 n n C10 H12 4WI sing 44 n n C5 H4 4WI sing 45 n n C9 H10 4WI sing 46 n n C11 H13 4WI sing 47 n n C12 H14 4WI sing 48 n n C19 H23 4WI sing 49 n n C19 H24 4WI sing 50 n n C19 H25 4WI sing 51 n n C20 H26 4WI sing 52 n n C20 H27 4WI sing 53 n n C20 H28 4WI sing 54 n n C16 H17 4WI sing 55 n n C16 H19 4WI sing 56 n n C16 H18 4WI sing 57 n n C17 H20 4WI sing 58 n n C17 H21 4WI sing 59 n n C17 H22 4WI sing 60 n n C23 H29 4WI sing 61 n n C23 H30 4WI sing 62 n n C23 H31 4WI sing 63 n n C4 H2 4WI sing 64 n n C4 H3 4WI sing 65 n n C2 H32 4WI sing 66 n n C14 H15 4WI sing 67 n n N5 H36 4WI sing 68 n n N2 H9 4WI sing 69 n n N1 H1 4WI sing 70 n n N4 H16 4WI sing 71 n n # _atom_sites.entry_id 8HZR _atom_sites.fract_transf_matrix[1][1] 0.0147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4WI A 1 301 1 4WI 9I7 . D 2 4WI B 1 301 2 4WI 9I7 . E 3 HOH A 1 401 14 HOH HOH . E 3 HOH A 2 402 71 HOH HOH . E 3 HOH A 3 403 43 HOH HOH . E 3 HOH A 4 404 78 HOH HOH . E 3 HOH A 5 405 61 HOH HOH . E 3 HOH A 6 406 107 HOH HOH . E 3 HOH A 7 407 35 HOH HOH . E 3 HOH A 8 408 60 HOH HOH . E 3 HOH A 9 409 11 HOH HOH . E 3 HOH A 10 410 99 HOH HOH . E 3 HOH A 11 411 108 HOH HOH . E 3 HOH A 12 412 74 HOH HOH . E 3 HOH A 13 413 22 HOH HOH . E 3 HOH A 14 414 77 HOH HOH . E 3 HOH A 15 415 62 HOH HOH . E 3 HOH A 16 416 68 HOH HOH . E 3 HOH A 17 417 75 HOH HOH . E 3 HOH A 18 418 39 HOH HOH . E 3 HOH A 19 419 106 HOH HOH . E 3 HOH A 20 420 100 HOH HOH . E 3 HOH A 21 421 52 HOH HOH . E 3 HOH A 22 422 47 HOH HOH . E 3 HOH A 23 423 8 HOH HOH . E 3 HOH A 24 424 5 HOH HOH . E 3 HOH A 25 425 54 HOH HOH . E 3 HOH A 26 426 9 HOH HOH . E 3 HOH A 27 427 50 HOH HOH . E 3 HOH A 28 428 3 HOH HOH . E 3 HOH A 29 429 32 HOH HOH . E 3 HOH A 30 430 91 HOH HOH . E 3 HOH A 31 431 12 HOH HOH . E 3 HOH A 32 432 45 HOH HOH . E 3 HOH A 33 433 53 HOH HOH . E 3 HOH A 34 434 55 HOH HOH . E 3 HOH A 35 435 30 HOH HOH . E 3 HOH A 36 436 66 HOH HOH . E 3 HOH A 37 437 13 HOH HOH . E 3 HOH A 38 438 88 HOH HOH . E 3 HOH A 39 439 28 HOH HOH . E 3 HOH A 40 440 15 HOH HOH . E 3 HOH A 41 441 89 HOH HOH . E 3 HOH A 42 442 121 HOH HOH . E 3 HOH A 43 443 18 HOH HOH . E 3 HOH A 44 444 59 HOH HOH . E 3 HOH A 45 445 102 HOH HOH . E 3 HOH A 46 446 57 HOH HOH . E 3 HOH A 47 447 64 HOH HOH . E 3 HOH A 48 448 96 HOH HOH . E 3 HOH A 49 449 34 HOH HOH . E 3 HOH A 50 450 1 HOH HOH . E 3 HOH A 51 451 19 HOH HOH . E 3 HOH A 52 452 87 HOH HOH . E 3 HOH A 53 453 46 HOH HOH . E 3 HOH A 54 454 23 HOH HOH . E 3 HOH A 55 455 65 HOH HOH . E 3 HOH A 56 456 82 HOH HOH . E 3 HOH A 57 457 37 HOH HOH . E 3 HOH A 58 458 44 HOH HOH . E 3 HOH A 59 459 115 HOH HOH . E 3 HOH A 60 460 98 HOH HOH . E 3 HOH A 61 461 36 HOH HOH . E 3 HOH A 62 462 84 HOH HOH . E 3 HOH A 63 463 125 HOH HOH . E 3 HOH A 64 464 129 HOH HOH . E 3 HOH A 65 465 93 HOH HOH . E 3 HOH A 66 466 76 HOH HOH . E 3 HOH A 67 467 97 HOH HOH . E 3 HOH A 68 468 128 HOH HOH . E 3 HOH A 69 469 112 HOH HOH . E 3 HOH A 70 470 133 HOH HOH . E 3 HOH A 71 471 117 HOH HOH . E 3 HOH A 72 472 80 HOH HOH . E 3 HOH A 73 473 31 HOH HOH . E 3 HOH A 74 474 127 HOH HOH . E 3 HOH A 75 475 94 HOH HOH . E 3 HOH A 76 476 40 HOH HOH . E 3 HOH A 77 477 92 HOH HOH . E 3 HOH A 78 478 79 HOH HOH . E 3 HOH A 79 479 124 HOH HOH . E 3 HOH A 80 480 119 HOH HOH . E 3 HOH A 81 481 7 HOH HOH . E 3 HOH A 82 482 103 HOH HOH . F 3 HOH B 1 401 69 HOH HOH . F 3 HOH B 2 402 104 HOH HOH . F 3 HOH B 3 403 4 HOH HOH . F 3 HOH B 4 404 33 HOH HOH . F 3 HOH B 5 405 72 HOH HOH . F 3 HOH B 6 406 81 HOH HOH . F 3 HOH B 7 407 131 HOH HOH . F 3 HOH B 8 408 48 HOH HOH . F 3 HOH B 9 409 110 HOH HOH . F 3 HOH B 10 410 56 HOH HOH . F 3 HOH B 11 411 67 HOH HOH . F 3 HOH B 12 412 41 HOH HOH . F 3 HOH B 13 413 83 HOH HOH . F 3 HOH B 14 414 16 HOH HOH . F 3 HOH B 15 415 86 HOH HOH . F 3 HOH B 16 416 27 HOH HOH . F 3 HOH B 17 417 10 HOH HOH . F 3 HOH B 18 418 111 HOH HOH . F 3 HOH B 19 419 49 HOH HOH . F 3 HOH B 20 420 17 HOH HOH . F 3 HOH B 21 421 63 HOH HOH . F 3 HOH B 22 422 2 HOH HOH . F 3 HOH B 23 423 21 HOH HOH . F 3 HOH B 24 424 58 HOH HOH . F 3 HOH B 25 425 85 HOH HOH . F 3 HOH B 26 426 70 HOH HOH . F 3 HOH B 27 427 29 HOH HOH . F 3 HOH B 28 428 38 HOH HOH . F 3 HOH B 29 429 42 HOH HOH . F 3 HOH B 30 430 6 HOH HOH . F 3 HOH B 31 431 105 HOH HOH . F 3 HOH B 32 432 101 HOH HOH . F 3 HOH B 33 433 120 HOH HOH . F 3 HOH B 34 434 126 HOH HOH . F 3 HOH B 35 435 24 HOH HOH . F 3 HOH B 36 436 26 HOH HOH . F 3 HOH B 37 437 116 HOH HOH . F 3 HOH B 38 438 122 HOH HOH . F 3 HOH B 39 439 51 HOH HOH . F 3 HOH B 40 440 20 HOH HOH . F 3 HOH B 41 441 132 HOH HOH . F 3 HOH B 42 442 90 HOH HOH . F 3 HOH B 43 443 130 HOH HOH . F 3 HOH B 44 444 95 HOH HOH . F 3 HOH B 45 445 109 HOH HOH . F 3 HOH B 46 446 25 HOH HOH . F 3 HOH B 47 447 73 HOH HOH . F 3 HOH B 48 448 113 HOH HOH . F 3 HOH B 49 449 118 HOH HOH . F 3 HOH B 50 450 123 HOH HOH . F 3 HOH B 51 451 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4WI . . . C 2 -16.904 -3.759 -26.152 1 31.48 ? C8 4WI 301 A 1 HETATM 2 C C3 4WI . . . C 2 -20.758 -1.501 -24.669 1 34.41 ? C3 4WI 301 A 1 HETATM 3 C C1 4WI . . . C 2 -21.442 -3.017 -27.852 1 26.69 ? C1 4WI 301 A 1 HETATM 4 C C13 4WI . . . C 2 -20.195 -4.299 -30.388 1 32.29 ? C13 4WI 301 A 1 HETATM 5 C C21 4WI . . . C 2 -19.463 -4.694 -33.56 1 38.18 ? C21 4WI 301 A 1 HETATM 6 C C6 4WI . . . C 2 -18.828 -5.207 -25.901 1 28.57 ? C6 4WI 301 A 1 HETATM 7 C C7 4WI . . . C 2 -17.891 -6.033 -25.913 1 32.86 ? C7 4WI 301 A 1 HETATM 8 C C10 4WI . . . C 2 -22.654 -4.275 -30.701 1 30.99 ? C10 4WI 301 A 1 HETATM 9 C C5 4WI . . . C 2 -18.19 -3.702 -26.366 1 29.58 ? C5 4WI 301 A 1 HETATM 10 C C9 4WI . . . C 2 -21.709 -2.684 -29.306 1 29.64 ? C9 4WI 301 A 1 HETATM 11 C C11 4WI . . . C 2 -23.572 -3.137 -30.681 1 32.36 ? C11 4WI 301 A 1 HETATM 12 C C12 4WI . . . C 2 -22.988 -2.144 -29.772 1 34.32 ? C12 4WI 301 A 1 HETATM 13 C C18 4WI . . . C 2 -23.462 -1.739 -31.086 1 28.65 ? C18 4WI 301 A 1 HETATM 14 C C19 4WI . . . C 2 -22.287 -1.383 -32.002 1 30.85 ? C19 4WI 301 A 1 HETATM 15 C C20 4WI . . . C 2 -24.753 -0.969 -31.106 1 31.06 ? C20 4WI 301 A 1 HETATM 16 C C16 4WI . . . C 2 -20.773 -7.085 -29.604 1 32.25 ? C16 4WI 301 A 1 HETATM 17 C C17 4WI . . . C 2 -19.591 -7.882 -31.702 1 37.62 ? C17 4WI 301 A 1 HETATM 18 C C23 4WI . . . C 2 -18.324 -6.642 -30.084 1 32.61 ? C23 4WI 301 A 1 HETATM 19 C C4 4WI . . . C 2 -18.907 -2.588 -25.52 1 29.28 ? C4 4WI 301 A 1 HETATM 20 C C2 4WI . . . C 2 -20.365 -2.144 -25.695 1 29.92 ? C2 4WI 301 A 1 HETATM 21 C C14 4WI . . . C 2 -20.118 -5.492 -31.355 1 31.95 ? C14 4WI 301 A 1 HETATM 22 C C22 4WI . . . C 2 -18.39 -4.25 -34.509 1 38.99 ? C22 4WI 301 A 1 HETATM 23 C C15 4WI . . . C 2 -19.727 -6.76 -30.667 1 36.45 ? C15 4WI 301 A 1 HETATM 24 N N5 4WI . . . C 2 -21.341 -1.953 -23.15 1 29.77 ? N5 4WI 301 A 1 HETATM 25 N N2 4WI . . . C 2 -16.547 -5.252 -25.833 1 30.32 ? N2 4WI 301 A 1 HETATM 26 N N3 4WI . . . C 2 -21.492 -3.727 -30.173 1 32.51 ? N3 4WI 301 A 1 HETATM 27 N N1 4WI . . . C 2 -20.72 -2.081 -27.064 1 27.01 ? N1 4WI 301 A 1 HETATM 28 N N4 4WI . . . C 2 -19.135 -5.146 -32.262 1 33.54 ? N4 4WI 301 A 1 HETATM 29 O O1 4WI . . . C 2 -16.109 -2.94 -26.158 1 29.26 ? O1 4WI 301 A 1 HETATM 30 O O2 4WI . . . C 2 -21.805 -3.99 -27.521 1 27.74 ? O2 4WI 301 A 1 HETATM 31 O O3 4WI . . . C 2 -19.301 -3.795 -29.904 1 31.67 ? O3 4WI 301 A 1 HETATM 32 O O4 4WI . . . C 2 -20.532 -4.677 -33.887 1 37.91 ? O4 4WI 301 A 1 HETATM 33 F F1 4WI . . . C 2 -17.686 -3.273 -34.048 1 41.86 ? F1 4WI 301 A 1 HETATM 34 F F2 4WI . . . C 2 -17.605 -5.179 -34.855 1 40.65 ? F2 4WI 301 A 1 HETATM 35 F F3 4WI . . . C 2 -18.91 -3.8 -35.58 1 43.73 ? F3 4WI 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #