data_8HZR
#
_model_server_result.job_id            2I1_qzzUvOoMHfC-jO5ccg 
_model_server_result.datetime_utc      '2025-07-12 18:55:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hzr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    8HZR 
#
_exptl.entry_id    8HZR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              501.542 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HZR 
_cell.length_a            68.028 
_cell.length_b            102.316 
_cell.length_c            103.299 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HZR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H34 F3 N5 O4' 
_chem_comp.formula_weight    501.542 
_chem_comp.id                4WI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C8 4WI doub 1 n n 
C8 N2 4WI sing 2 n n 
C8 C5 4WI sing 3 n n 
N2 C7 4WI sing 4 n n 
C4 C5 4WI sing 5 n n 
C4 C2 4WI sing 6 n n 
C5 C6 4WI sing 7 n n 
N5 C3 4WI doub 8 n n 
C3 C2 4WI sing 9 n n 
C7 C6 4WI sing 10 n n 
C2 N1 4WI sing 11 n n 
N1 C1 4WI sing 12 n n 
F1 C22 4WI sing 13 n n 
O3 C13 4WI doub 14 n n 
C1 C9 4WI sing 15 n n 
C1 O2 4WI doub 16 n n 
F3 C22 4WI sing 17 n n 
C23 C15 4WI sing 18 n n 
C22 F2 4WI sing 19 n n 
C22 C21 4WI sing 20 n n 
C9 N3 4WI sing 21 n n 
C9 C12 4WI sing 22 n n 
C13 N3 4WI sing 23 n n 
C13 C14 4WI sing 24 n n 
N4 C21 4WI sing 25 n n 
N4 C14 4WI sing 26 n n 
C19 C18 4WI sing 27 n n 
N3 C10 4WI sing 28 n n 
C21 O4 4WI doub 29 n n 
C12 C18 4WI sing 30 n n 
C12 C11 4WI sing 31 n n 
C14 C15 4WI sing 32 n n 
C15 C17 4WI sing 33 n n 
C15 C16 4WI sing 34 n n 
C18 C20 4WI sing 35 n n 
C18 C11 4WI sing 36 n n 
C10 C11 4WI sing 37 n n 
C3 H33 4WI sing 38 n n 
C6 H5 4WI sing 39 n n 
C6 H6 4WI sing 40 n n 
C7 H7 4WI sing 41 n n 
C7 H8 4WI sing 42 n n 
C10 H11 4WI sing 43 n n 
C10 H12 4WI sing 44 n n 
C5 H4 4WI sing 45 n n 
C9 H10 4WI sing 46 n n 
C11 H13 4WI sing 47 n n 
C12 H14 4WI sing 48 n n 
C19 H23 4WI sing 49 n n 
C19 H24 4WI sing 50 n n 
C19 H25 4WI sing 51 n n 
C20 H26 4WI sing 52 n n 
C20 H27 4WI sing 53 n n 
C20 H28 4WI sing 54 n n 
C16 H17 4WI sing 55 n n 
C16 H19 4WI sing 56 n n 
C16 H18 4WI sing 57 n n 
C17 H20 4WI sing 58 n n 
C17 H21 4WI sing 59 n n 
C17 H22 4WI sing 60 n n 
C23 H29 4WI sing 61 n n 
C23 H30 4WI sing 62 n n 
C23 H31 4WI sing 63 n n 
C4 H2 4WI sing 64 n n 
C4 H3 4WI sing 65 n n 
C2 H32 4WI sing 66 n n 
C14 H15 4WI sing 67 n n 
N5 H36 4WI sing 68 n n 
N2 H9 4WI sing 69 n n 
N1 H1 4WI sing 70 n n 
N4 H16 4WI sing 71 n n 
#
_atom_sites.entry_id                     8HZR 
_atom_sites.fract_transf_matrix[1][1]    0.0147 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4WI A 1 301 1 4WI 9I7 . 
D 2 4WI B 1 301 2 4WI 9I7 . 
E 3 HOH A 1 401 14 HOH HOH . 
E 3 HOH A 2 402 71 HOH HOH . 
E 3 HOH A 3 403 43 HOH HOH . 
E 3 HOH A 4 404 78 HOH HOH . 
E 3 HOH A 5 405 61 HOH HOH . 
E 3 HOH A 6 406 107 HOH HOH . 
E 3 HOH A 7 407 35 HOH HOH . 
E 3 HOH A 8 408 60 HOH HOH . 
E 3 HOH A 9 409 11 HOH HOH . 
E 3 HOH A 10 410 99 HOH HOH . 
E 3 HOH A 11 411 108 HOH HOH . 
E 3 HOH A 12 412 74 HOH HOH . 
E 3 HOH A 13 413 22 HOH HOH . 
E 3 HOH A 14 414 77 HOH HOH . 
E 3 HOH A 15 415 62 HOH HOH . 
E 3 HOH A 16 416 68 HOH HOH . 
E 3 HOH A 17 417 75 HOH HOH . 
E 3 HOH A 18 418 39 HOH HOH . 
E 3 HOH A 19 419 106 HOH HOH . 
E 3 HOH A 20 420 100 HOH HOH . 
E 3 HOH A 21 421 52 HOH HOH . 
E 3 HOH A 22 422 47 HOH HOH . 
E 3 HOH A 23 423 8 HOH HOH . 
E 3 HOH A 24 424 5 HOH HOH . 
E 3 HOH A 25 425 54 HOH HOH . 
E 3 HOH A 26 426 9 HOH HOH . 
E 3 HOH A 27 427 50 HOH HOH . 
E 3 HOH A 28 428 3 HOH HOH . 
E 3 HOH A 29 429 32 HOH HOH . 
E 3 HOH A 30 430 91 HOH HOH . 
E 3 HOH A 31 431 12 HOH HOH . 
E 3 HOH A 32 432 45 HOH HOH . 
E 3 HOH A 33 433 53 HOH HOH . 
E 3 HOH A 34 434 55 HOH HOH . 
E 3 HOH A 35 435 30 HOH HOH . 
E 3 HOH A 36 436 66 HOH HOH . 
E 3 HOH A 37 437 13 HOH HOH . 
E 3 HOH A 38 438 88 HOH HOH . 
E 3 HOH A 39 439 28 HOH HOH . 
E 3 HOH A 40 440 15 HOH HOH . 
E 3 HOH A 41 441 89 HOH HOH . 
E 3 HOH A 42 442 121 HOH HOH . 
E 3 HOH A 43 443 18 HOH HOH . 
E 3 HOH A 44 444 59 HOH HOH . 
E 3 HOH A 45 445 102 HOH HOH . 
E 3 HOH A 46 446 57 HOH HOH . 
E 3 HOH A 47 447 64 HOH HOH . 
E 3 HOH A 48 448 96 HOH HOH . 
E 3 HOH A 49 449 34 HOH HOH . 
E 3 HOH A 50 450 1 HOH HOH . 
E 3 HOH A 51 451 19 HOH HOH . 
E 3 HOH A 52 452 87 HOH HOH . 
E 3 HOH A 53 453 46 HOH HOH . 
E 3 HOH A 54 454 23 HOH HOH . 
E 3 HOH A 55 455 65 HOH HOH . 
E 3 HOH A 56 456 82 HOH HOH . 
E 3 HOH A 57 457 37 HOH HOH . 
E 3 HOH A 58 458 44 HOH HOH . 
E 3 HOH A 59 459 115 HOH HOH . 
E 3 HOH A 60 460 98 HOH HOH . 
E 3 HOH A 61 461 36 HOH HOH . 
E 3 HOH A 62 462 84 HOH HOH . 
E 3 HOH A 63 463 125 HOH HOH . 
E 3 HOH A 64 464 129 HOH HOH . 
E 3 HOH A 65 465 93 HOH HOH . 
E 3 HOH A 66 466 76 HOH HOH . 
E 3 HOH A 67 467 97 HOH HOH . 
E 3 HOH A 68 468 128 HOH HOH . 
E 3 HOH A 69 469 112 HOH HOH . 
E 3 HOH A 70 470 133 HOH HOH . 
E 3 HOH A 71 471 117 HOH HOH . 
E 3 HOH A 72 472 80 HOH HOH . 
E 3 HOH A 73 473 31 HOH HOH . 
E 3 HOH A 74 474 127 HOH HOH . 
E 3 HOH A 75 475 94 HOH HOH . 
E 3 HOH A 76 476 40 HOH HOH . 
E 3 HOH A 77 477 92 HOH HOH . 
E 3 HOH A 78 478 79 HOH HOH . 
E 3 HOH A 79 479 124 HOH HOH . 
E 3 HOH A 80 480 119 HOH HOH . 
E 3 HOH A 81 481 7 HOH HOH . 
E 3 HOH A 82 482 103 HOH HOH . 
F 3 HOH B 1 401 69 HOH HOH . 
F 3 HOH B 2 402 104 HOH HOH . 
F 3 HOH B 3 403 4 HOH HOH . 
F 3 HOH B 4 404 33 HOH HOH . 
F 3 HOH B 5 405 72 HOH HOH . 
F 3 HOH B 6 406 81 HOH HOH . 
F 3 HOH B 7 407 131 HOH HOH . 
F 3 HOH B 8 408 48 HOH HOH . 
F 3 HOH B 9 409 110 HOH HOH . 
F 3 HOH B 10 410 56 HOH HOH . 
F 3 HOH B 11 411 67 HOH HOH . 
F 3 HOH B 12 412 41 HOH HOH . 
F 3 HOH B 13 413 83 HOH HOH . 
F 3 HOH B 14 414 16 HOH HOH . 
F 3 HOH B 15 415 86 HOH HOH . 
F 3 HOH B 16 416 27 HOH HOH . 
F 3 HOH B 17 417 10 HOH HOH . 
F 3 HOH B 18 418 111 HOH HOH . 
F 3 HOH B 19 419 49 HOH HOH . 
F 3 HOH B 20 420 17 HOH HOH . 
F 3 HOH B 21 421 63 HOH HOH . 
F 3 HOH B 22 422 2 HOH HOH . 
F 3 HOH B 23 423 21 HOH HOH . 
F 3 HOH B 24 424 58 HOH HOH . 
F 3 HOH B 25 425 85 HOH HOH . 
F 3 HOH B 26 426 70 HOH HOH . 
F 3 HOH B 27 427 29 HOH HOH . 
F 3 HOH B 28 428 38 HOH HOH . 
F 3 HOH B 29 429 42 HOH HOH . 
F 3 HOH B 30 430 6 HOH HOH . 
F 3 HOH B 31 431 105 HOH HOH . 
F 3 HOH B 32 432 101 HOH HOH . 
F 3 HOH B 33 433 120 HOH HOH . 
F 3 HOH B 34 434 126 HOH HOH . 
F 3 HOH B 35 435 24 HOH HOH . 
F 3 HOH B 36 436 26 HOH HOH . 
F 3 HOH B 37 437 116 HOH HOH . 
F 3 HOH B 38 438 122 HOH HOH . 
F 3 HOH B 39 439 51 HOH HOH . 
F 3 HOH B 40 440 20 HOH HOH . 
F 3 HOH B 41 441 132 HOH HOH . 
F 3 HOH B 42 442 90 HOH HOH . 
F 3 HOH B 43 443 130 HOH HOH . 
F 3 HOH B 44 444 95 HOH HOH . 
F 3 HOH B 45 445 109 HOH HOH . 
F 3 HOH B 46 446 25 HOH HOH . 
F 3 HOH B 47 447 73 HOH HOH . 
F 3 HOH B 48 448 113 HOH HOH . 
F 3 HOH B 49 449 118 HOH HOH . 
F 3 HOH B 50 450 123 HOH HOH . 
F 3 HOH B 51 451 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 4WI . . . D 2 13.525 10.138 -6.279 1 30.52 ? C8 4WI 301 B 1 
HETATM 2 C C3 4WI . . . D 2 11.966 12.582 -2.369 1 28.47 ? C3 4WI 301 B 1 
HETATM 3 C C1 4WI . . . D 2 15.396 11.768 -1.999 1 34.44 ? C1 4WI 301 B 1 
HETATM 4 C C13 4WI . . . D 2 17.766 9.911 -2.833 1 34.7 ? C13 4WI 301 B 1 
HETATM 5 C C21 4WI . . . D 2 20.175 7.658 -2.615 1 39.45 ? C21 4WI 301 B 1 
HETATM 6 C C6 4WI . . . D 2 14.761 12.201 -5.772 1 35.43 ? C6 4WI 301 B 1 
HETATM 7 C C7 4WI . . . D 2 15.102 12.015 -7.001 1 37.11 ? C7 4WI 301 B 1 
HETATM 8 C C10 4WI . . . D 2 18.583 11.375 -0.864 1 33.55 ? C10 4WI 301 B 1 
HETATM 9 C C5 4WI . . . D 2 13.958 10.781 -5.228 1 31.38 ? C5 4WI 301 B 1 
HETATM 10 C C9 4WI . . . D 2 16.295 10.93 -1.084 1 34.67 ? C9 4WI 301 B 1 
HETATM 11 C C11 4WI . . . D 2 18.001 11.372 0.535 1 34.47 ? C11 4WI 301 B 1 
HETATM 12 C C12 4WI . . . D 2 16.53 11.106 0.384 1 33.52 ? C12 4WI 301 B 1 
HETATM 13 C C18 4WI . . . D 2 17.305 10.421 1.456 1 32.3 ? C18 4WI 301 B 1 
HETATM 14 C C19 4WI . . . D 2 17.531 8.921 1.171 1 32.38 ? C19 4WI 301 B 1 
HETATM 15 C C20 4WI . . . D 2 17.105 10.926 2.898 1 29.9 ? C20 4WI 301 B 1 
HETATM 16 C C16 4WI . . . D 2 18.535 9.97 -5.835 1 36.18 ? C16 4WI 301 B 1 
HETATM 17 C C17 4WI . . . D 2 20.881 10.522 -5.043 1 35.37 ? C17 4WI 301 B 1 
HETATM 18 C C23 4WI . . . D 2 18.909 12.013 -4.386 1 39.73 ? C23 4WI 301 B 1 
HETATM 19 C C4 4WI . . . D 2 12.76 11.211 -4.317 1 29.23 ? C4 4WI 301 B 1 
HETATM 20 C C2 4WI . . . D 2 13.184 12.103 -3.14 1 29.61 ? C2 4WI 301 B 1 
HETATM 21 C C14 4WI . . . D 2 19.182 9.735 -3.372 1 35.64 ? C14 4WI 301 B 1 
HETATM 22 C C22 4WI . . . D 2 20.38 6.157 -2.734 1 40.49 ? C22 4WI 301 B 1 
HETATM 23 C C15 4WI . . . D 2 19.368 10.556 -4.663 1 38.89 ? C15 4WI 301 B 1 
HETATM 24 N N5 4WI . . . D 2 11.398 13.625 -2.798 1 28.74 ? N5 4WI 301 B 1 
HETATM 25 N N2 4WI . . . D 2 14.19 10.837 -7.572 1 33.49 ? N2 4WI 301 B 1 
HETATM 26 N N3 4WI . . . D 2 17.581 10.709 -1.612 1 34.79 ? N3 4WI 301 B 1 
HETATM 27 N N1 4WI . . . D 2 14.019 11.32 -2.253 1 31.49 ? N1 4WI 301 B 1 
HETATM 28 N N4 4WI . . . D 2 19.328 8.327 -3.58 1 35.82 ? N4 4WI 301 B 1 
HETATM 29 O O1 4WI . . . D 2 12.78 9.209 -6.319 1 28.5 ? O1 4WI 301 B 1 
HETATM 30 O O2 4WI . . . D 2 15.878 12.733 -2.511 1 33.38 ? O2 4WI 301 B 1 
HETATM 31 O O3 4WI . . . D 2 16.842 9.398 -3.377 1 30.9 ? O3 4WI 301 B 1 
HETATM 32 O O4 4WI . . . D 2 20.702 8.277 -1.747 1 40.37 ? O4 4WI 301 B 1 
HETATM 33 F F1 4WI . . . D 2 19.163 5.57 -2.767 1 44.95 ? F1 4WI 301 B 1 
HETATM 34 F F2 4WI . . . D 2 21.016 5.823 -3.888 1 44.74 ? F2 4WI 301 B 1 
HETATM 35 F F3 4WI . . . D 2 21.091 5.782 -1.635 1 46.53 ? F3 4WI 301 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#