data_8I04 # _model_server_result.job_id dw7QVcD0r_SpI0qsN3YHyQ _model_server_result.datetime_utc '2025-01-10 21:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8I04 # _exptl.entry_id 8I04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8I04 _cell.length_a 122.157 _cell.length_b 122.157 _cell.length_c 128.184 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -42.728 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 281 n n N H SER sing 282 n n N H2 SER sing 283 n n CA C SER sing 284 n n CA CB SER sing 285 n n CA HA SER sing 286 n n C O SER doub 287 n n C OXT SER sing 288 n n CB OG SER sing 289 n n CB HB2 SER sing 290 n n CB HB3 SER sing 291 n n OG HG SER sing 292 n n OXT HXT SER sing 293 n n # _atom_sites.entry_id 8I04 _atom_sites.fract_transf_matrix[1][1] 0.008186 _atom_sites.fract_transf_matrix[1][2] 0.004726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SER A 1 401 401 SER SER . E 2 SER A 1 402 401 SER SER . F 2 SER B 1 401 401 SER SER . G 3 PO4 C 1 301 1 PO4 PO4 . H 4 HOH A 1 501 42 HOH HOH . H 4 HOH A 2 502 61 HOH HOH . H 4 HOH A 3 503 15 HOH HOH . H 4 HOH A 4 504 36 HOH HOH . H 4 HOH A 5 505 56 HOH HOH . H 4 HOH A 6 506 5 HOH HOH . H 4 HOH A 7 507 2 HOH HOH . H 4 HOH A 8 508 55 HOH HOH . H 4 HOH A 9 509 9 HOH HOH . H 4 HOH A 10 510 51 HOH HOH . H 4 HOH A 11 511 34 HOH HOH . H 4 HOH A 12 512 59 HOH HOH . H 4 HOH A 13 513 63 HOH HOH . H 4 HOH A 14 514 33 HOH HOH . H 4 HOH A 15 515 58 HOH HOH . H 4 HOH A 16 516 54 HOH HOH . H 4 HOH A 17 517 26 HOH HOH . H 4 HOH A 18 518 47 HOH HOH . H 4 HOH A 19 519 19 HOH HOH . H 4 HOH A 20 520 57 HOH HOH . H 4 HOH A 21 521 16 HOH HOH . H 4 HOH A 22 522 8 HOH HOH . H 4 HOH A 23 523 69 HOH HOH . H 4 HOH A 24 524 66 HOH HOH . H 4 HOH A 25 525 14 HOH HOH . H 4 HOH A 26 526 22 HOH HOH . H 4 HOH A 27 527 45 HOH HOH . H 4 HOH A 28 528 23 HOH HOH . H 4 HOH A 29 529 25 HOH HOH . H 4 HOH A 30 530 27 HOH HOH . H 4 HOH A 31 531 50 HOH HOH . I 4 HOH B 1 501 41 HOH HOH . I 4 HOH B 2 502 37 HOH HOH . I 4 HOH B 3 503 62 HOH HOH . I 4 HOH B 4 504 46 HOH HOH . I 4 HOH B 5 505 12 HOH HOH . I 4 HOH B 6 506 24 HOH HOH . I 4 HOH B 7 507 18 HOH HOH . I 4 HOH B 8 508 65 HOH HOH . I 4 HOH B 9 509 21 HOH HOH . I 4 HOH B 10 510 11 HOH HOH . I 4 HOH B 11 511 20 HOH HOH . I 4 HOH B 12 512 4 HOH HOH . I 4 HOH B 13 513 48 HOH HOH . I 4 HOH B 14 514 38 HOH HOH . I 4 HOH B 15 515 32 HOH HOH . I 4 HOH B 16 516 6 HOH HOH . I 4 HOH B 17 517 70 HOH HOH . J 4 HOH C 1 401 43 HOH HOH . J 4 HOH C 2 402 68 HOH HOH . J 4 HOH C 3 403 64 HOH HOH . J 4 HOH C 4 404 31 HOH HOH . J 4 HOH C 5 405 53 HOH HOH . J 4 HOH C 6 406 67 HOH HOH . J 4 HOH C 7 407 29 HOH HOH . J 4 HOH C 8 408 13 HOH HOH . J 4 HOH C 9 409 7 HOH HOH . J 4 HOH C 10 410 49 HOH HOH . J 4 HOH C 11 411 10 HOH HOH . J 4 HOH C 12 412 3 HOH HOH . J 4 HOH C 13 413 30 HOH HOH . J 4 HOH C 14 414 35 HOH HOH . J 4 HOH C 15 415 52 HOH HOH . J 4 HOH C 16 416 44 HOH HOH . J 4 HOH C 17 417 28 HOH HOH . J 4 HOH C 18 418 60 HOH HOH . J 4 HOH C 19 419 39 HOH HOH . J 4 HOH C 20 420 40 HOH HOH . J 4 HOH C 21 421 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . E 2 49.236 -30.171 -38.39 1 43.77 ? N SER 402 A 1 HETATM 2 C CA SER . . . E 2 50.665 -29.951 -38.497 1 42.59 ? CA SER 402 A 1 HETATM 3 C C SER . . . E 2 51.308 -31.18 -39.169 1 48.69 ? C SER 402 A 1 HETATM 4 O O SER . . . E 2 52.469 -31.114 -39.596 1 43 ? O SER 402 A 1 HETATM 5 C CB SER . . . E 2 51.304 -29.61 -37.121 1 41.5 ? CB SER 402 A 1 HETATM 6 O OG SER . . . E 2 51.398 -30.678 -36.122 1 30.88 ? OG SER 402 A 1 HETATM 7 O OXT SER . . . E 2 50.682 -32.252 -39.344 1 48.46 ? OXT SER 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #