data_8I06 # _model_server_result.job_id 8UVMQpTg2upZRHDoRVd3_Q _model_server_result.datetime_utc '2024-10-19 10:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8I06 # _exptl.entry_id 8I06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I06 _cell.length_a 161.71 _cell.length_b 161.71 _cell.length_c 161.71 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8I06 _atom_sites.fract_transf_matrix[1][1] 0.006184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYS A 1 401 401 CYS CYS . D 3 COA A 1 402 501 COA COA . E 2 CYS B 1 401 401 CYS CYS . F 3 COA B 1 402 501 COA COA . G 4 HOH A 1 501 7 HOH HOH . G 4 HOH A 2 502 6 HOH HOH . G 4 HOH A 3 503 8 HOH HOH . G 4 HOH A 4 504 3 HOH HOH . G 4 HOH A 5 505 9 HOH HOH . G 4 HOH A 6 506 2 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 5 HOH HOH . H 4 HOH B 3 503 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 -30.459 -35.87 -25.255 1 50.56 ? N1A COA 402 A 1 HETATM 2 C C2A COA . . . D 3 -31.196 -36.533 -26.172 1 50.86 ? C2A COA 402 A 1 HETATM 3 N N3A COA . . . D 3 -31.537 -37.819 -26.051 1 52.64 ? N3A COA 402 A 1 HETATM 4 C C4A COA . . . D 3 -31.13 -38.532 -24.984 1 55.33 ? C4A COA 402 A 1 HETATM 5 C C5A COA . . . D 3 -30.334 -37.889 -23.937 1 56.6 ? C5A COA 402 A 1 HETATM 6 C C6A COA . . . D 3 -30.012 -36.466 -24.144 1 51.39 ? C6A COA 402 A 1 HETATM 7 N N6A COA . . . D 3 -29.291 -35.804 -23.213 1 53.22 ? N6A COA 402 A 1 HETATM 8 N N7A COA . . . D 3 -30.091 -38.798 -22.963 1 52.68 ? N7A COA 402 A 1 HETATM 9 C C8A COA . . . D 3 -30.677 -39.935 -23.377 1 58.31 ? C8A COA 402 A 1 HETATM 10 N N9A COA . . . D 3 -31.296 -39.774 -24.574 1 56.93 ? N9A COA 402 A 1 HETATM 11 C C1B COA . . . D 3 -32.064 -40.801 -25.311 1 59.72 ? C1B COA 402 A 1 HETATM 12 C C2B COA . . . D 3 -31.36 -42.15 -25.49 1 59.28 ? C2B COA 402 A 1 HETATM 13 O O2B COA . . . D 3 -30.61 -42.21 -26.722 1 66.27 ? O2B COA 402 A 1 HETATM 14 C C3B COA . . . D 3 -32.536 -43.094 -25.444 1 60.35 ? C3B COA 402 A 1 HETATM 15 O O3B COA . . . D 3 -33.147 -43.224 -26.741 1 71.85 ? O3B COA 402 A 1 HETATM 16 P P3B COA . . . D 3 -33.748 -44.628 -27.33 1 72.13 ? P3B COA 402 A 1 HETATM 17 O O7A COA . . . D 3 -34.216 -44.126 -28.68 1 69.32 ? O7A COA 402 A 1 HETATM 18 O O8A COA . . . D 3 -34.86 -45.063 -26.411 1 69.49 ? O8A COA 402 A 1 HETATM 19 O O9A COA . . . D 3 -32.573 -45.546 -27.27 1 63.05 ? O9A COA 402 A 1 HETATM 20 C C4B COA . . . D 3 -33.542 -42.432 -24.506 1 58.38 ? C4B COA 402 A 1 HETATM 21 O O4B COA . . . D 3 -33.245 -41.045 -24.542 1 62.17 ? O4B COA 402 A 1 HETATM 22 C C5B COA . . . D 3 -33.498 -42.921 -23.064 1 56.15 ? C5B COA 402 A 1 HETATM 23 O O5B COA . . . D 3 -32.175 -42.911 -22.547 1 59.64 ? O5B COA 402 A 1 HETATM 24 P P1A COA . . . D 3 -31.876 -43.358 -21.043 1 59.81 ? P1A COA 402 A 1 HETATM 25 O O1A COA . . . D 3 -30.41 -43.298 -20.899 1 66.65 ? O1A COA 402 A 1 HETATM 26 O O2A COA . . . D 3 -32.634 -44.607 -20.815 1 67.86 ? O2A COA 402 A 1 HETATM 27 O O3A COA . . . D 3 -32.581 -42.147 -20.245 1 63.14 ? O3A COA 402 A 1 HETATM 28 P P2A COA . . . D 3 -32.589 -41.868 -18.662 1 58.07 ? P2A COA 402 A 1 HETATM 29 O O4A COA . . . D 3 -33.968 -41.66 -18.122 1 60.99 ? O4A COA 402 A 1 HETATM 30 O O5A COA . . . D 3 -31.601 -42.719 -17.955 1 61.95 ? O5A COA 402 A 1 HETATM 31 O O6A COA . . . D 3 -31.928 -40.408 -18.51 1 61.45 ? O6A COA 402 A 1 HETATM 32 C CBP COA . . . D 3 -30.201 -38.73 -19.016 1 55.58 ? CBP COA 402 A 1 HETATM 33 C CCP COA . . . D 3 -30.545 -40.202 -18.842 1 56.63 ? CCP COA 402 A 1 HETATM 34 C CDP COA . . . D 3 -31.218 -38.09 -19.946 1 56.16 ? CDP COA 402 A 1 HETATM 35 C CEP COA . . . D 3 -30.264 -38.054 -17.657 1 59.92 ? CEP COA 402 A 1 HETATM 36 C CAP COA . . . D 3 -28.759 -38.628 -19.536 1 57.2 ? CAP COA 402 A 1 HETATM 37 O OAP COA . . . D 3 -28.661 -39.221 -20.838 1 53.2 ? OAP COA 402 A 1 HETATM 38 C C9P COA . . . D 3 -28.256 -37.184 -19.507 1 59.22 ? C9P COA 402 A 1 HETATM 39 O O9P COA . . . D 3 -28.622 -36.392 -20.362 1 54.37 ? O9P COA 402 A 1 HETATM 40 N N8P COA . . . D 3 -27.433 -36.847 -18.498 1 61.15 ? N8P COA 402 A 1 HETATM 41 C C7P COA . . . D 3 -26.86 -35.527 -18.332 1 63.9 ? C7P COA 402 A 1 HETATM 42 C C6P COA . . . D 3 -25.557 -35.5 -17.493 1 68.32 ? C6P COA 402 A 1 HETATM 43 C C5P COA . . . D 3 -24.919 -34.14 -17.614 1 66.36 ? C5P COA 402 A 1 HETATM 44 O O5P COA . . . D 3 -25.588 -33.21 -18.034 1 57.28 ? O5P COA 402 A 1 HETATM 45 N N4P COA . . . D 3 -23.686 -33.794 -17.258 1 77.39 ? N4P COA 402 A 1 HETATM 46 C C3P COA . . . D 3 -22.683 -34.422 -16.454 1 83.37 ? C3P COA 402 A 1 HETATM 47 C C2P COA . . . D 3 -21.343 -33.876 -16.956 1 91.7 ? C2P COA 402 A 1 HETATM 48 S S1P COA . . . D 3 -20.666 -32.408 -16.119 1 95.66 ? S1P COA 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #