data_8I06 # _model_server_result.job_id PRTPxS7oFMH294vScwcSFA _model_server_result.datetime_utc '2024-10-19 10:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 8I06 # _exptl.entry_id 8I06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I06 _cell.length_a 161.71 _cell.length_b 161.71 _cell.length_c 161.71 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8I06 _atom_sites.fract_transf_matrix[1][1] 0.006184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYS A 1 401 401 CYS CYS . D 3 COA A 1 402 501 COA COA . E 2 CYS B 1 401 401 CYS CYS . F 3 COA B 1 402 501 COA COA . G 4 HOH A 1 501 7 HOH HOH . G 4 HOH A 2 502 6 HOH HOH . G 4 HOH A 3 503 8 HOH HOH . G 4 HOH A 4 504 3 HOH HOH . G 4 HOH A 5 505 9 HOH HOH . G 4 HOH A 6 506 2 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 5 HOH HOH . H 4 HOH B 3 503 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 14.971 24.286 24.316 1 135.49 ? N1A COA 402 B 1 HETATM 2 C C2A COA . . . F 3 15.801 25.041 25.065 1 133.4 ? C2A COA 402 B 1 HETATM 3 N N3A COA . . . F 3 15.379 26.103 25.789 1 132.86 ? N3A COA 402 B 1 HETATM 4 C C4A COA . . . F 3 14.072 26.491 25.801 1 145.14 ? C4A COA 402 B 1 HETATM 5 C C5A COA . . . F 3 13.11 25.713 25.004 1 146.23 ? C5A COA 402 B 1 HETATM 6 C C6A COA . . . F 3 13.645 24.557 24.237 1 142.24 ? C6A COA 402 B 1 HETATM 7 N N6A COA . . . F 3 12.821 23.794 23.482 1 146.26 ? N6A COA 402 B 1 HETATM 8 N N7A COA . . . F 3 11.908 26.296 25.182 1 149.35 ? N7A COA 402 B 1 HETATM 9 C C8A COA . . . F 3 12.064 27.347 26.024 1 149.09 ? C8A COA 402 B 1 HETATM 10 N N9A COA . . . F 3 13.362 27.469 26.389 1 152.32 ? N9A COA 402 B 1 HETATM 11 C C1B COA . . . F 3 13.939 28.507 27.296 1 141.38 ? C1B COA 402 B 1 HETATM 12 C C2B COA . . . F 3 13.454 29.939 27.016 1 132.48 ? C2B COA 402 B 1 HETATM 13 O O2B COA . . . F 3 14.145 30.597 25.945 1 120.68 ? O2B COA 402 B 1 HETATM 14 C C3B COA . . . F 3 13.712 30.589 28.354 1 131.63 ? C3B COA 402 B 1 HETATM 15 O O3B COA . . . F 3 15.108 30.946 28.413 1 137.2 ? O3B COA 402 B 1 HETATM 16 P P3B COA . . . F 3 15.765 32.261 29.114 1 121.4 ? P3B COA 402 B 1 HETATM 17 O O7A COA . . . F 3 17.217 31.848 29.348 1 84.8 ? O7A COA 402 B 1 HETATM 18 O O8A COA . . . F 3 14.929 32.362 30.376 1 99.87 ? O8A COA 402 B 1 HETATM 19 O O9A COA . . . F 3 15.569 33.384 28.096 1 98.43 ? O9A COA 402 B 1 HETATM 20 C C4B COA . . . F 3 13.368 29.469 29.339 1 130.01 ? C4B COA 402 B 1 HETATM 21 O O4B COA . . . F 3 13.602 28.234 28.663 1 132.18 ? O4B COA 402 B 1 HETATM 22 C C5B COA . . . F 3 11.924 29.494 29.831 1 127.05 ? C5B COA 402 B 1 HETATM 23 O O5B COA . . . F 3 11.004 29.304 28.755 1 125.3 ? O5B COA 402 B 1 HETATM 24 P P1A COA . . . F 3 9.425 29.174 29.049 1 117.93 ? P1A COA 402 B 1 HETATM 25 O O1A COA . . . F 3 8.691 29.275 27.739 1 112.16 ? O1A COA 402 B 1 HETATM 26 O O2A COA . . . F 3 9.046 30.163 30.112 1 111.59 ? O2A COA 402 B 1 HETATM 27 O O3A COA . . . F 3 9.371 27.683 29.697 1 116.24 ? O3A COA 402 B 1 HETATM 28 P P2A COA . . . F 3 7.998 26.841 29.923 1 118.49 ? P2A COA 402 B 1 HETATM 29 O O4A COA . . . F 3 7.97 26.081 31.24 1 92.91 ? O4A COA 402 B 1 HETATM 30 O O5A COA . . . F 3 6.833 27.732 29.527 1 92.81 ? O5A COA 402 B 1 HETATM 31 O O6A COA . . . F 3 8.198 25.671 28.829 1 135.58 ? O6A COA 402 B 1 HETATM 32 C CBP COA . . . F 3 8.426 24.741 26.58 1 137.59 ? CBP COA 402 B 1 HETATM 33 C CCP COA . . . F 3 7.78 25.807 27.466 1 136.6 ? CCP COA 402 B 1 HETATM 34 C CDP COA . . . F 3 9.899 24.569 26.953 1 141.77 ? CDP COA 402 B 1 HETATM 35 C CEP COA . . . F 3 7.729 23.403 26.821 1 143.66 ? CEP COA 402 B 1 HETATM 36 C CAP COA . . . F 3 8.244 25.211 25.121 1 135.68 ? CAP COA 402 B 1 HETATM 37 O OAP COA . . . F 3 9.156 26.293 24.859 1 132.08 ? OAP COA 402 B 1 HETATM 38 C C9P COA . . . F 3 8.432 24.109 24.093 1 138.51 ? C9P COA 402 B 1 HETATM 39 O O9P COA . . . F 3 9.56 23.79 23.724 1 129.04 ? O9P COA 402 B 1 HETATM 40 N N8P COA . . . F 3 7.324 23.508 23.63 1 135.66 ? N8P COA 402 B 1 HETATM 41 C C7P COA . . . F 3 7.397 22.416 22.675 1 135.07 ? C7P COA 402 B 1 HETATM 42 C C6P COA . . . F 3 6.101 22.186 21.909 1 127.54 ? C6P COA 402 B 1 HETATM 43 C C5P COA . . . F 3 6.392 21.409 20.632 1 128.04 ? C5P COA 402 B 1 HETATM 44 O O5P COA . . . F 3 7.061 20.372 20.648 1 104.09 ? O5P COA 402 B 1 HETATM 45 N N4P COA . . . F 3 5.872 21.929 19.517 1 131.38 ? N4P COA 402 B 1 HETATM 46 C C3P COA . . . F 3 6.03 21.307 18.21 1 138.9 ? C3P COA 402 B 1 HETATM 47 C C2P COA . . . F 3 4.952 21.758 17.226 1 140.35 ? C2P COA 402 B 1 HETATM 48 S S1P COA . . . F 3 3.668 20.519 16.944 1 141.43 ? S1P COA 402 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #