data_8I0I # _model_server_result.job_id b70qwp2A3t4gaX39JG6IJw _model_server_result.datetime_utc '2024-10-11 06:18:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 8I0I # _exptl.entry_id 8I0I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I0I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2A DUT . A DUT 602 1_555 J MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 F O2G DUT . A DUT 602 1_555 J MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc3 G MG MG . A MG 603 1_555 I O2A DUT . C DUT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 G MG MG . A MG 603 1_555 I O2G DUT . C DUT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc5 L O1A DUT . D DUT 602 1_555 P MG MG . E MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc6 L O2G DUT . D DUT 602 1_555 P MG MG . E MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc7 M MG MG . D MG 603 1_555 O O2G DUT . E DUT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc8 M MG MG . D MG 603 1_555 O O1A DUT . E DUT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 8I0I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DTP A 1 601 601 DTP DTP . F 3 DUT A 1 602 602 DUT DUT . G 4 MG A 1 603 1 MG MG . H 2 DTP C 1 601 601 DTP DTP . I 3 DUT C 1 602 602 DUT DUT . J 4 MG C 1 603 1 MG MG . K 2 DTP D 1 601 601 DTP DTP . L 3 DUT D 1 602 602 DUT DUT . M 4 MG D 1 603 1 MG MG . N 2 DTP E 1 601 601 DTP DTP . O 3 DUT E 1 602 602 DUT DUT . P 4 MG E 1 603 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . E 2 115.884 137.819 152.509 1 49.22 ? PG DTP 601 A 1 HETATM 2 O O1G DTP . . . E 2 116.767 136.74 151.986 1 49.22 ? O1G DTP 601 A 1 HETATM 3 O O2G DTP . . . E 2 115.1 138.552 151.426 1 49.22 ? O2G DTP 601 A 1 HETATM 4 O O3G DTP . . . E 2 114.914 137.352 153.598 1 49.22 ? O3G DTP 601 A 1 HETATM 5 P PB DTP . . . E 2 118.263 139.323 153.467 1 49.22 ? PB DTP 601 A 1 HETATM 6 O O1B DTP . . . E 2 119.168 138.337 152.854 1 49.22 ? O1B DTP 601 A 1 HETATM 7 O O2B DTP . . . E 2 118.454 140.768 153.023 1 49.22 ? O2B DTP 601 A 1 HETATM 8 O O3B DTP . . . E 2 116.751 138.954 153.204 1 49.22 ? O3B DTP 601 A 1 HETATM 9 P PA DTP . . . E 2 118.091 140.367 156.215 1 49.22 ? PA DTP 601 A 1 HETATM 10 O O1A DTP . . . E 2 116.719 140.267 156.751 1 49.22 ? O1A DTP 601 A 1 HETATM 11 O O2A DTP . . . E 2 118.482 141.738 155.668 1 49.22 ? O2A DTP 601 A 1 HETATM 12 O O3A DTP . . . E 2 118.329 139.321 155.056 1 49.22 ? O3A DTP 601 A 1 HETATM 13 O O5' DTP . . . E 2 119.15 139.936 157.303 1 49.22 ? O5' DTP 601 A 1 HETATM 14 C C5' DTP . . . E 2 118.975 138.734 158.081 1 49.22 ? C5' DTP 601 A 1 HETATM 15 C C4' DTP . . . E 2 118.834 139.11 159.534 1 49.22 ? C4' DTP 601 A 1 HETATM 16 O O4' DTP . . . E 2 120.144 139.224 160.133 1 49.22 ? O4' DTP 601 A 1 HETATM 17 C C3' DTP . . . E 2 118.152 140.449 159.789 1 49.22 ? C3' DTP 601 A 1 HETATM 18 O O3' DTP . . . E 2 116.741 140.274 159.917 1 49.22 ? O3' DTP 601 A 1 HETATM 19 C C2' DTP . . . E 2 118.768 140.876 161.113 1 49.22 ? C2' DTP 601 A 1 HETATM 20 C C1' DTP . . . E 2 120.191 140.347 161.001 1 49.22 ? C1' DTP 601 A 1 HETATM 21 N N9 DTP . . . E 2 121.152 141.299 160.462 1 49.22 ? N9 DTP 601 A 1 HETATM 22 C C8 DTP . . . E 2 121.393 141.564 159.14 1 49.22 ? C8 DTP 601 A 1 HETATM 23 N N7 DTP . . . E 2 122.316 142.47 158.934 1 49.22 ? N7 DTP 601 A 1 HETATM 24 C C5 DTP . . . E 2 122.71 142.832 160.213 1 49.22 ? C5 DTP 601 A 1 HETATM 25 C C6 DTP . . . E 2 123.661 143.753 160.687 1 49.22 ? C6 DTP 601 A 1 HETATM 26 N N6 DTP . . . E 2 124.42 144.512 159.892 1 49.22 ? N6 DTP 601 A 1 HETATM 27 N N1 DTP . . . E 2 123.811 143.87 162.024 1 49.22 ? N1 DTP 601 A 1 HETATM 28 C C2 DTP . . . E 2 123.057 143.112 162.823 1 49.22 ? C2 DTP 601 A 1 HETATM 29 N N3 DTP . . . E 2 122.13 142.21 162.491 1 49.22 ? N3 DTP 601 A 1 HETATM 30 C C4 DTP . . . E 2 122.002 142.117 161.165 1 49.22 ? C4 DTP 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #