data_8I1M # _model_server_result.job_id 6b65vMYWJaQi3VEcOWOzsw _model_server_result.datetime_utc '2024-10-10 04:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8I1M # _exptl.entry_id 8I1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.94 _cell.angle_gamma 90 _cell.entry_id 8I1M _cell.length_a 114.352 _cell.length_b 51.361 _cell.length_c 32.397 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 183 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 207 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 188 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 212 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.039 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8I1M _atom_sites.fract_transf_matrix[1][1] 0.008745 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000295 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 301 301 ADP ADP . C 3 ADX A 1 302 302 ADX ADX . D 4 PO4 A 1 303 303 PO4 PO4 . E 5 HOH A 1 401 109 HOH HOH . E 5 HOH A 2 402 41 HOH HOH . E 5 HOH A 3 403 91 HOH HOH . E 5 HOH A 4 404 99 HOH HOH . E 5 HOH A 5 405 35 HOH HOH . E 5 HOH A 6 406 9 HOH HOH . E 5 HOH A 7 407 4 HOH HOH . E 5 HOH A 8 408 30 HOH HOH . E 5 HOH A 9 409 65 HOH HOH . E 5 HOH A 10 410 131 HOH HOH . E 5 HOH A 11 411 10 HOH HOH . E 5 HOH A 12 412 29 HOH HOH . E 5 HOH A 13 413 143 HOH HOH . E 5 HOH A 14 414 31 HOH HOH . E 5 HOH A 15 415 1 HOH HOH . E 5 HOH A 16 416 43 HOH HOH . E 5 HOH A 17 417 37 HOH HOH . E 5 HOH A 18 418 22 HOH HOH . E 5 HOH A 19 419 148 HOH HOH . E 5 HOH A 20 420 33 HOH HOH . E 5 HOH A 21 421 38 HOH HOH . E 5 HOH A 22 422 70 HOH HOH . E 5 HOH A 23 423 2 HOH HOH . E 5 HOH A 24 424 19 HOH HOH . E 5 HOH A 25 425 74 HOH HOH . E 5 HOH A 26 426 119 HOH HOH . E 5 HOH A 27 427 24 HOH HOH . E 5 HOH A 28 428 87 HOH HOH . E 5 HOH A 29 429 8 HOH HOH . E 5 HOH A 30 430 67 HOH HOH . E 5 HOH A 31 431 102 HOH HOH . E 5 HOH A 32 432 5 HOH HOH . E 5 HOH A 33 433 49 HOH HOH . E 5 HOH A 34 434 12 HOH HOH . E 5 HOH A 35 435 20 HOH HOH . E 5 HOH A 36 436 81 HOH HOH . E 5 HOH A 37 437 3 HOH HOH . E 5 HOH A 38 438 61 HOH HOH . E 5 HOH A 39 439 13 HOH HOH . E 5 HOH A 40 440 11 HOH HOH . E 5 HOH A 41 441 23 HOH HOH . E 5 HOH A 42 442 147 HOH HOH . E 5 HOH A 43 443 14 HOH HOH . E 5 HOH A 44 444 27 HOH HOH . E 5 HOH A 45 445 93 HOH HOH . E 5 HOH A 46 446 51 HOH HOH . E 5 HOH A 47 447 151 HOH HOH . E 5 HOH A 48 448 132 HOH HOH . E 5 HOH A 49 449 152 HOH HOH . E 5 HOH A 50 450 137 HOH HOH . E 5 HOH A 51 451 47 HOH HOH . E 5 HOH A 52 452 159 HOH HOH . E 5 HOH A 53 453 25 HOH HOH . E 5 HOH A 54 454 53 HOH HOH . E 5 HOH A 55 455 88 HOH HOH . E 5 HOH A 56 456 101 HOH HOH . E 5 HOH A 57 457 32 HOH HOH . E 5 HOH A 58 458 121 HOH HOH . E 5 HOH A 59 459 42 HOH HOH . E 5 HOH A 60 460 160 HOH HOH . E 5 HOH A 61 461 108 HOH HOH . E 5 HOH A 62 462 59 HOH HOH . E 5 HOH A 63 463 89 HOH HOH . E 5 HOH A 64 464 96 HOH HOH . E 5 HOH A 65 465 86 HOH HOH . E 5 HOH A 66 466 34 HOH HOH . E 5 HOH A 67 467 26 HOH HOH . E 5 HOH A 68 468 149 HOH HOH . E 5 HOH A 69 469 44 HOH HOH . E 5 HOH A 70 470 122 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 6 HOH HOH . E 5 HOH A 73 473 21 HOH HOH . E 5 HOH A 74 474 154 HOH HOH . E 5 HOH A 75 475 105 HOH HOH . E 5 HOH A 76 476 58 HOH HOH . E 5 HOH A 77 477 92 HOH HOH . E 5 HOH A 78 478 48 HOH HOH . E 5 HOH A 79 479 39 HOH HOH . E 5 HOH A 80 480 62 HOH HOH . E 5 HOH A 81 481 117 HOH HOH . E 5 HOH A 82 482 77 HOH HOH . E 5 HOH A 83 483 16 HOH HOH . E 5 HOH A 84 484 52 HOH HOH . E 5 HOH A 85 485 17 HOH HOH . E 5 HOH A 86 486 60 HOH HOH . E 5 HOH A 87 487 126 HOH HOH . E 5 HOH A 88 488 113 HOH HOH . E 5 HOH A 89 489 75 HOH HOH . E 5 HOH A 90 490 120 HOH HOH . E 5 HOH A 91 491 128 HOH HOH . E 5 HOH A 92 492 36 HOH HOH . E 5 HOH A 93 493 18 HOH HOH . E 5 HOH A 94 494 15 HOH HOH . E 5 HOH A 95 495 72 HOH HOH . E 5 HOH A 96 496 73 HOH HOH . E 5 HOH A 97 497 50 HOH HOH . E 5 HOH A 98 498 84 HOH HOH . E 5 HOH A 99 499 100 HOH HOH . E 5 HOH A 100 500 7 HOH HOH . E 5 HOH A 101 501 45 HOH HOH . E 5 HOH A 102 502 98 HOH HOH . E 5 HOH A 103 503 82 HOH HOH . E 5 HOH A 104 504 54 HOH HOH . E 5 HOH A 105 505 146 HOH HOH . E 5 HOH A 106 506 57 HOH HOH . E 5 HOH A 107 507 40 HOH HOH . E 5 HOH A 108 508 97 HOH HOH . E 5 HOH A 109 509 111 HOH HOH . E 5 HOH A 110 510 28 HOH HOH . E 5 HOH A 111 511 95 HOH HOH . E 5 HOH A 112 512 46 HOH HOH . E 5 HOH A 113 513 138 HOH HOH . E 5 HOH A 114 514 107 HOH HOH . E 5 HOH A 115 515 129 HOH HOH . E 5 HOH A 116 516 135 HOH HOH . E 5 HOH A 117 517 80 HOH HOH . E 5 HOH A 118 518 124 HOH HOH . E 5 HOH A 119 519 118 HOH HOH . E 5 HOH A 120 520 106 HOH HOH . E 5 HOH A 121 521 104 HOH HOH . E 5 HOH A 122 522 156 HOH HOH . E 5 HOH A 123 523 69 HOH HOH . E 5 HOH A 124 524 145 HOH HOH . E 5 HOH A 125 525 85 HOH HOH . E 5 HOH A 126 526 76 HOH HOH . E 5 HOH A 127 527 127 HOH HOH . E 5 HOH A 128 528 112 HOH HOH . E 5 HOH A 129 529 103 HOH HOH . E 5 HOH A 130 530 153 HOH HOH . E 5 HOH A 131 531 110 HOH HOH . E 5 HOH A 132 532 83 HOH HOH . E 5 HOH A 133 533 56 HOH HOH . E 5 HOH A 134 534 114 HOH HOH . E 5 HOH A 135 535 66 HOH HOH . E 5 HOH A 136 536 123 HOH HOH . E 5 HOH A 137 537 130 HOH HOH . E 5 HOH A 138 538 134 HOH HOH . E 5 HOH A 139 539 139 HOH HOH . E 5 HOH A 140 540 140 HOH HOH . E 5 HOH A 141 541 155 HOH HOH . E 5 HOH A 142 542 78 HOH HOH . E 5 HOH A 143 543 136 HOH HOH . E 5 HOH A 144 544 144 HOH HOH . E 5 HOH A 145 545 116 HOH HOH . E 5 HOH A 146 546 133 HOH HOH . E 5 HOH A 147 547 150 HOH HOH . E 5 HOH A 148 548 68 HOH HOH . E 5 HOH A 149 549 158 HOH HOH . E 5 HOH A 150 550 157 HOH HOH . E 5 HOH A 151 551 141 HOH HOH . E 5 HOH A 152 552 115 HOH HOH . E 5 HOH A 153 553 64 HOH HOH . E 5 HOH A 154 554 55 HOH HOH . E 5 HOH A 155 555 125 HOH HOH . E 5 HOH A 156 556 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -28.995 -24.623 -9.903 1 63.56 ? PB ADP 301 A 1 HETATM 2 O O1B ADP . . . B 2 -28.491 -25.041 -11.268 1 46.26 ? O1B ADP 301 A 1 HETATM 3 O O2B ADP . . . B 2 -30.505 -24.7 -9.739 1 48.09 ? O2B ADP 301 A 1 HETATM 4 O O3B ADP . . . B 2 -28.426 -23.29 -9.47 1 46.45 ? O3B ADP 301 A 1 HETATM 5 P PA ADP . . . B 2 -28.465 -25.628 -7.234 1 52.09 ? PA ADP 301 A 1 HETATM 6 O O1A ADP . . . B 2 -29.885 -25.331 -6.781 1 38.86 ? O1A ADP 301 A 1 HETATM 7 O O2A ADP . . . B 2 -27.765 -26.821 -6.617 1 37.77 ? O2A ADP 301 A 1 HETATM 8 O O3A ADP . . . B 2 -28.367 -25.725 -8.87 1 42.89 ? O3A ADP 301 A 1 HETATM 9 O O5' ADP . . . B 2 -27.527 -24.344 -6.988 1 35.78 ? O5' ADP 301 A 1 HETATM 10 C C5' ADP . . . B 2 -26.185 -24.438 -7.471 1 33.98 ? C5' ADP 301 A 1 HETATM 11 C C4' ADP . . . B 2 -25.612 -23.048 -7.407 1 31.23 ? C4' ADP 301 A 1 HETATM 12 O O4' ADP . . . B 2 -26.662 -22.202 -7.853 1 39.74 ? O4' ADP 301 A 1 HETATM 13 C C3' ADP . . . B 2 -25.308 -22.651 -5.974 1 32.04 ? C3' ADP 301 A 1 HETATM 14 O O3' ADP . . . B 2 -24.04 -21.979 -5.935 1 38.62 ? O3' ADP 301 A 1 HETATM 15 C C2' ADP . . . B 2 -26.409 -21.688 -5.572 1 34.95 ? C2' ADP 301 A 1 HETATM 16 O O2' ADP . . . B 2 -25.837 -20.627 -4.796 1 39.28 ? O2' ADP 301 A 1 HETATM 17 C C1' ADP . . . B 2 -26.991 -21.203 -6.894 1 32.14 ? C1' ADP 301 A 1 HETATM 18 N N9 ADP . . . B 2 -28.471 -21.036 -6.898 1 37 ? N9 ADP 301 A 1 HETATM 19 C C8 ADP . . . B 2 -29.383 -21.796 -6.269 1 36.42 ? C8 ADP 301 A 1 HETATM 20 N N7 ADP . . . B 2 -30.663 -21.376 -6.467 1 30.94 ? N7 ADP 301 A 1 HETATM 21 C C5 ADP . . . B 2 -30.571 -20.304 -7.269 1 36.37 ? C5 ADP 301 A 1 HETATM 22 C C6 ADP . . . B 2 -31.53 -19.368 -7.891 1 35.98 ? C6 ADP 301 A 1 HETATM 23 N N6 ADP . . . B 2 -32.864 -19.508 -7.677 1 43.06 ? N6 ADP 301 A 1 HETATM 24 N N1 ADP . . . B 2 -31.03 -18.379 -8.669 1 38.32 ? N1 ADP 301 A 1 HETATM 25 C C2 ADP . . . B 2 -29.71 -18.233 -8.884 1 32.85 ? C2 ADP 301 A 1 HETATM 26 N N3 ADP . . . B 2 -28.778 -19.043 -8.354 1 37.82 ? N3 ADP 301 A 1 HETATM 27 C C4 ADP . . . B 2 -29.138 -20.083 -7.552 1 38.61 ? C4 ADP 301 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #