data_8I1N # _model_server_result.job_id ryr4kKyn9MsZ-4QP6hwjSQ _model_server_result.datetime_utc '2024-11-08 09:35:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8I1N # _exptl.entry_id 8I1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.82 _cell.angle_gamma 90 _cell.entry_id 8I1N _cell.length_a 75.594 _cell.length_b 71.329 _cell.length_c 89.986 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 34 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id O2B _struct_conn.ptnr2_label_comp_id ADP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id ADP _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.317 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8I1N _atom_sites.fract_transf_matrix[1][1] 0.013229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 301 301 ADP ADP . F 2 ADP B 1 301 301 ADP ADP . G 3 ADX B 1 302 401 ADX ADX . H 2 ADP C 1 301 301 ADP ADP . I 3 ADX C 1 302 401 ADX ADX . J 2 ADP D 1 301 301 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 2 -12.848 13.388 13.051 1 32.53 ? PB ADP 301 B 1 HETATM 2 O O1B ADP . . . F 2 -12.066 13.768 11.786 1 28.81 ? O1B ADP 301 B 1 HETATM 3 O O2B ADP . . . F 2 -13.774 12.113 13.045 1 40.06 ? O2B ADP 301 B 1 HETATM 4 O O3B ADP . . . F 2 -12.003 13.462 14.318 1 24.16 ? O3B ADP 301 B 1 HETATM 5 P PA ADP . . . F 2 -14.36 15.362 14.509 1 33.14 ? PA ADP 301 B 1 HETATM 6 O O1A ADP . . . F 2 -13.197 16.124 15.086 1 36.05 ? O1A ADP 301 B 1 HETATM 7 O O2A ADP . . . F 2 -15.121 14.394 15.414 1 27.61 ? O2A ADP 301 B 1 HETATM 8 O O3A ADP . . . F 2 -13.915 14.608 13.149 1 29.09 ? O3A ADP 301 B 1 HETATM 9 O O5' ADP . . . F 2 -15.385 16.469 13.917 1 33.24 ? O5' ADP 301 B 1 HETATM 10 C C5' ADP . . . F 2 -16.709 16.067 13.548 1 33.83 ? C5' ADP 301 B 1 HETATM 11 C C4' ADP . . . F 2 -17.657 17.249 13.415 1 35.33 ? C4' ADP 301 B 1 HETATM 12 O O4' ADP . . . F 2 -18.882 16.867 12.773 1 38.41 ? O4' ADP 301 B 1 HETATM 13 C C3' ADP . . . F 2 -18.037 17.748 14.789 1 36 ? C3' ADP 301 B 1 HETATM 14 O O3' ADP . . . F 2 -18.104 19.174 14.714 1 44.37 ? O3' ADP 301 B 1 HETATM 15 C C2' ADP . . . F 2 -19.425 17.223 15.023 1 32.84 ? C2' ADP 301 B 1 HETATM 16 O O2' ADP . . . F 2 -20.114 18.165 15.832 1 31.66 ? O2' ADP 301 B 1 HETATM 17 C C1' ADP . . . F 2 -19.991 17.194 13.616 1 36.44 ? C1' ADP 301 B 1 HETATM 18 N N9 ADP . . . F 2 -21.045 16.175 13.429 1 34.55 ? N9 ADP 301 B 1 HETATM 19 C C8 ADP . . . F 2 -22.27 16.422 12.935 1 31.15 ? C8 ADP 301 B 1 HETATM 20 N N7 ADP . . . F 2 -23.001 15.277 12.873 1 36.6 ? N7 ADP 301 B 1 HETATM 21 C C5 ADP . . . F 2 -22.239 14.277 13.349 1 33.94 ? C5 ADP 301 B 1 HETATM 22 C C6 ADP . . . F 2 -22.419 12.832 13.559 1 37.34 ? C6 ADP 301 B 1 HETATM 23 N N6 ADP . . . F 2 -23.596 12.236 13.23 1 38.37 ? N6 ADP 301 B 1 HETATM 24 N N1 ADP . . . F 2 -21.371 12.143 14.075 1 42.08 ? N1 ADP 301 B 1 HETATM 25 C C2 ADP . . . F 2 -20.204 12.745 14.388 1 38.93 ? C2 ADP 301 B 1 HETATM 26 N N3 ADP . . . F 2 -19.978 14.064 14.221 1 36.27 ? N3 ADP 301 B 1 HETATM 27 C C4 ADP . . . F 2 -20.945 14.87 13.714 1 37.11 ? C4 ADP 301 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #