data_8I1N # _model_server_result.job_id UH9pq-ct9yRIkZLk8UiIXQ _model_server_result.datetime_utc '2024-11-26 13:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 8I1N # _exptl.entry_id 8I1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-PHOSPHOSULFATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.82 _cell.angle_gamma 90 _cell.entry_id 8I1N _cell.length_a 75.594 _cell.length_b 71.329 _cell.length_c 89.986 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 34 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id O2B _struct_conn.ptnr2_label_comp_id ADP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id ADP _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.317 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O10 P S' _chem_comp.formula_weight 427.284 _chem_comp.id ADX _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-PHOSPHOSULFATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8I1N _atom_sites.fract_transf_matrix[1][1] 0.013229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 301 301 ADP ADP . F 2 ADP B 1 301 301 ADP ADP . G 3 ADX B 1 302 401 ADX ADX . H 2 ADP C 1 301 301 ADP ADP . I 3 ADX C 1 302 401 ADX ADX . J 2 ADP D 1 301 301 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SB ADX . . . G 3 -4.649 11.094 12.046 1 77.75 ? SB ADX 302 B 1 HETATM 2 O O1B ADX . . . G 3 -5.184 12.155 11.392 1 63.4 ? O1B ADX 302 B 1 HETATM 3 O O2B ADX . . . G 3 -4.522 10.039 11.093 1 52.14 ? O2B ADX 302 B 1 HETATM 4 O O3B ADX . . . G 3 -5.745 10.991 12.938 1 54.54 ? O3B ADX 302 B 1 HETATM 5 P PA ADX . . . G 3 -2.696 11.972 13.954 1 78.45 ? PA ADX 302 B 1 HETATM 6 O O1A ADX . . . G 3 -1.602 12.85 13.519 1 67.7 ? O1A ADX 302 B 1 HETATM 7 O O2A ADX . . . G 3 -2.323 11.05 15.038 1 49.2 ? O2A ADX 302 B 1 HETATM 8 O O3A ADX . . . G 3 -3.269 11.369 12.592 1 61.25 ? O3A ADX 302 B 1 HETATM 9 O O5' ADX . . . G 3 -3.892 12.787 14.535 1 64.63 ? O5' ADX 302 B 1 HETATM 10 C C5' ADX . . . G 3 -4.819 13.46 13.738 1 58 ? C5' ADX 302 B 1 HETATM 11 C C4' ADX . . . G 3 -3.959 14.458 13.109 1 65.53 ? C4' ADX 302 B 1 HETATM 12 O O4' ADX . . . G 3 -3.375 13.826 11.994 1 76.92 ? O4' ADX 302 B 1 HETATM 13 C C3' ADX . . . G 3 -4.799 15.547 12.647 1 56.93 ? C3' ADX 302 B 1 HETATM 14 O O3' ADX . . . G 3 -3.923 16.666 12.6 1 53.99 ? O3' ADX 302 B 1 HETATM 15 C C2' ADX . . . G 3 -5.005 14.838 11.361 1 67.23 ? C2' ADX 302 B 1 HETATM 16 O O2' ADX . . . G 3 -6.004 15.636 10.771 1 70.35 ? O2' ADX 302 B 1 HETATM 17 C C1' ADX . . . G 3 -3.601 14.466 10.751 1 68.24 ? C1' ADX 302 B 1 HETATM 18 N N9 ADX . . . G 3 -3.198 13.428 9.632 1 60.86 ? N9 ADX 302 B 1 HETATM 19 C C8 ADX . . . G 3 -3.036 12.103 9.775 1 55.64 ? C8 ADX 302 B 1 HETATM 20 N N7 ADX . . . G 3 -2.678 11.405 8.681 1 44.13 ? N7 ADX 302 B 1 HETATM 21 C C5 ADX . . . G 3 -2.577 12.287 7.74 1 51.28 ? C5 ADX 302 B 1 HETATM 22 C C6 ADX . . . G 3 -2.235 12.23 6.324 1 49.73 ? C6 ADX 302 B 1 HETATM 23 N N6 ADX . . . G 3 -1.939 11.107 5.666 1 44.9 ? N6 ADX 302 B 1 HETATM 24 N N1 ADX . . . G 3 -2.224 13.369 5.672 1 41.41 ? N1 ADX 302 B 1 HETATM 25 C C2 ADX . . . G 3 -2.492 14.499 6.27 1 40.69 ? C2 ADX 302 B 1 HETATM 26 N N3 ADX . . . G 3 -2.781 14.624 7.536 1 45.76 ? N3 ADX 302 B 1 HETATM 27 C C4 ADX . . . G 3 -2.864 13.587 8.349 1 52.27 ? C4 ADX 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #