data_8I1N # _model_server_result.job_id w9JEUZUm6HCyNIEiNLgmRw _model_server_result.datetime_utc '2024-11-29 23:18:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 8I1N # _exptl.entry_id 8I1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-PHOSPHOSULFATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.82 _cell.angle_gamma 90 _cell.entry_id 8I1N _cell.length_a 75.594 _cell.length_b 71.329 _cell.length_c 89.986 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 34 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id O2B _struct_conn.ptnr2_label_comp_id ADP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id ADP _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.317 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O10 P S' _chem_comp.formula_weight 427.284 _chem_comp.id ADX _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-PHOSPHOSULFATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8I1N _atom_sites.fract_transf_matrix[1][1] 0.013229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006117 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 301 301 ADP ADP . F 2 ADP B 1 301 301 ADP ADP . G 3 ADX B 1 302 401 ADX ADX . H 2 ADP C 1 301 301 ADP ADP . I 3 ADX C 1 302 401 ADX ADX . J 2 ADP D 1 301 301 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SB ADX . . . I 3 6.755 -2.682 -14.45 1 70.88 ? SB ADX 302 C 1 HETATM 2 O O1B ADX . . . I 3 7.147 -2.88 -15.797 1 44.85 ? O1B ADX 302 C 1 HETATM 3 O O2B ADX . . . I 3 5.787 -1.646 -14.25 1 53.16 ? O2B ADX 302 C 1 HETATM 4 O O3B ADX . . . I 3 5.995 -3.777 -14.15 1 68.56 ? O3B ADX 302 C 1 HETATM 5 P PA ADX . . . I 3 8.08 -3.14 -11.909 1 78.45 ? PA ADX 302 C 1 HETATM 6 O O1A ADX . . . I 3 6.741 -3.068 -11.306 1 63.37 ? O1A ADX 302 C 1 HETATM 7 O O2A ADX . . . I 3 9.222 -2.626 -11.128 1 54.02 ? O2A ADX 302 C 1 HETATM 8 O O3A ADX . . . I 3 7.912 -2.599 -13.432 1 64.88 ? O3A ADX 302 C 1 HETATM 9 O O5' ADX . . . I 3 8.506 -4.592 -12.117 1 60.41 ? O5' ADX 302 C 1 HETATM 10 C C5' ADX . . . I 3 8.03 -5.254 -13.212 1 50.25 ? C5' ADX 302 C 1 HETATM 11 C C4' ADX . . . I 3 6.968 -6.093 -12.655 1 55.15 ? C4' ADX 302 C 1 HETATM 12 O O4' ADX . . . I 3 5.936 -5.315 -12.141 1 67.11 ? O4' ADX 302 C 1 HETATM 13 C C3' ADX . . . I 3 6.431 -6.909 -13.708 1 51.01 ? C3' ADX 302 C 1 HETATM 14 O O3' ADX . . . I 3 6.224 -8.059 -12.972 1 54.38 ? O3' ADX 302 C 1 HETATM 15 C C2' ADX . . . I 3 5.109 -6.304 -13.934 1 66.38 ? C2' ADX 302 C 1 HETATM 16 O O2' ADX . . . I 3 4.393 -7.3 -14.694 1 71.38 ? O2' ADX 302 C 1 HETATM 17 C C1' ADX . . . I 3 4.654 -5.757 -12.551 1 66.53 ? C1' ADX 302 C 1 HETATM 18 N N9 ADX . . . I 3 3.682 -4.575 -12.338 1 62.47 ? N9 ADX 302 C 1 HETATM 19 C C8 ADX . . . I 3 4.064 -3.315 -12.331 1 59.07 ? C8 ADX 302 C 1 HETATM 20 N N7 ADX . . . I 3 3.072 -2.456 -12.125 1 52.71 ? N7 ADX 302 C 1 HETATM 21 C C5 ADX . . . I 3 1.996 -3.133 -11.949 1 50.48 ? C5 ADX 302 C 1 HETATM 22 C C6 ADX . . . I 3 0.63 -2.787 -11.682 1 52.46 ? C6 ADX 302 C 1 HETATM 23 N N6 ADX . . . I 3 0.2 -1.532 -11.556 1 46.88 ? N6 ADX 302 C 1 HETATM 24 N N1 ADX . . . I 3 -0.217 -3.761 -11.565 1 52 ? N1 ADX 302 C 1 HETATM 25 C C2 ADX . . . I 3 0.158 -5.002 -11.673 1 51.55 ? C2 ADX 302 C 1 HETATM 26 N N3 ADX . . . I 3 1.389 -5.351 -11.912 1 55.84 ? N3 ADX 302 C 1 HETATM 27 C C4 ADX . . . I 3 2.376 -4.5 -12.063 1 53.66 ? C4 ADX 302 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #