data_8I1O # _model_server_result.job_id jyYlCU_rgOoW6ziS1jPTyQ _model_server_result.datetime_utc '2024-11-30 04:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 8I1O # _exptl.entry_id 8I1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.44 _cell.angle_gamma 90 _cell.entry_id 8I1O _cell.length_a 64.725 _cell.length_b 53.035 _cell.length_c 130.639 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8I1O _atom_sites.fract_transf_matrix[1][1] 0.01545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 301 301 ADP ADP . F 3 ADX A 1 302 302 ADX ADX . G 2 ADP B 1 301 301 ADP ADP . H 3 ADX B 1 302 302 ADX ADX . I 2 ADP C 1 301 301 ADP ADP . J 3 ADX C 1 302 302 ADX ADX . K 2 ADP D 1 301 301 ADP ADP . L 3 ADX D 1 302 302 ADX ADX . M 4 HOH A 1 401 97 HOH HOH . M 4 HOH A 2 402 76 HOH HOH . M 4 HOH A 3 403 106 HOH HOH . M 4 HOH A 4 404 1 HOH HOH . M 4 HOH A 5 405 34 HOH HOH . M 4 HOH A 6 406 132 HOH HOH . M 4 HOH A 7 407 9 HOH HOH . M 4 HOH A 8 408 43 HOH HOH . M 4 HOH A 9 409 7 HOH HOH . M 4 HOH A 10 410 141 HOH HOH . M 4 HOH A 11 411 13 HOH HOH . M 4 HOH A 12 412 129 HOH HOH . M 4 HOH A 13 413 11 HOH HOH . M 4 HOH A 14 414 123 HOH HOH . M 4 HOH A 15 415 78 HOH HOH . M 4 HOH A 16 416 79 HOH HOH . M 4 HOH A 17 417 135 HOH HOH . M 4 HOH A 18 418 40 HOH HOH . M 4 HOH A 19 419 24 HOH HOH . M 4 HOH A 20 420 48 HOH HOH . M 4 HOH A 21 421 120 HOH HOH . M 4 HOH A 22 422 131 HOH HOH . M 4 HOH A 23 423 21 HOH HOH . M 4 HOH A 24 424 115 HOH HOH . M 4 HOH A 25 425 51 HOH HOH . M 4 HOH A 26 426 27 HOH HOH . M 4 HOH A 27 427 63 HOH HOH . M 4 HOH A 28 428 19 HOH HOH . M 4 HOH A 29 429 113 HOH HOH . M 4 HOH A 30 430 60 HOH HOH . M 4 HOH A 31 431 140 HOH HOH . M 4 HOH A 32 432 35 HOH HOH . M 4 HOH A 33 433 93 HOH HOH . M 4 HOH A 34 434 22 HOH HOH . M 4 HOH A 35 435 82 HOH HOH . M 4 HOH A 36 436 72 HOH HOH . M 4 HOH A 37 437 142 HOH HOH . M 4 HOH A 38 438 145 HOH HOH . M 4 HOH A 39 439 149 HOH HOH . M 4 HOH A 40 440 137 HOH HOH . M 4 HOH A 41 441 103 HOH HOH . M 4 HOH A 42 442 151 HOH HOH . M 4 HOH A 43 443 26 HOH HOH . M 4 HOH A 44 444 116 HOH HOH . M 4 HOH A 45 445 152 HOH HOH . M 4 HOH A 46 446 148 HOH HOH . M 4 HOH A 47 447 112 HOH HOH . M 4 HOH A 48 448 146 HOH HOH . M 4 HOH A 49 449 144 HOH HOH . M 4 HOH A 50 450 100 HOH HOH . N 4 HOH B 1 401 95 HOH HOH . N 4 HOH B 2 402 90 HOH HOH . N 4 HOH B 3 403 96 HOH HOH . N 4 HOH B 4 404 42 HOH HOH . N 4 HOH B 5 405 80 HOH HOH . N 4 HOH B 6 406 28 HOH HOH . N 4 HOH B 7 407 52 HOH HOH . N 4 HOH B 8 408 15 HOH HOH . N 4 HOH B 9 409 23 HOH HOH . N 4 HOH B 10 410 118 HOH HOH . N 4 HOH B 11 411 99 HOH HOH . N 4 HOH B 12 412 5 HOH HOH . N 4 HOH B 13 413 156 HOH HOH . N 4 HOH B 14 414 41 HOH HOH . N 4 HOH B 15 415 25 HOH HOH . N 4 HOH B 16 416 54 HOH HOH . N 4 HOH B 17 417 105 HOH HOH . N 4 HOH B 18 418 154 HOH HOH . N 4 HOH B 19 419 98 HOH HOH . N 4 HOH B 20 420 83 HOH HOH . N 4 HOH B 21 421 53 HOH HOH . N 4 HOH B 22 422 29 HOH HOH . N 4 HOH B 23 423 110 HOH HOH . N 4 HOH B 24 424 31 HOH HOH . N 4 HOH B 25 425 126 HOH HOH . N 4 HOH B 26 426 14 HOH HOH . N 4 HOH B 27 427 33 HOH HOH . N 4 HOH B 28 428 91 HOH HOH . N 4 HOH B 29 429 158 HOH HOH . N 4 HOH B 30 430 155 HOH HOH . N 4 HOH B 31 431 134 HOH HOH . N 4 HOH B 32 432 62 HOH HOH . N 4 HOH B 33 433 153 HOH HOH . N 4 HOH B 34 434 37 HOH HOH . N 4 HOH B 35 435 47 HOH HOH . N 4 HOH B 36 436 130 HOH HOH . N 4 HOH B 37 437 150 HOH HOH . N 4 HOH B 38 438 88 HOH HOH . N 4 HOH B 39 439 46 HOH HOH . N 4 HOH B 40 440 70 HOH HOH . N 4 HOH B 41 441 157 HOH HOH . N 4 HOH B 42 442 147 HOH HOH . O 4 HOH C 1 401 125 HOH HOH . O 4 HOH C 2 402 108 HOH HOH . O 4 HOH C 3 403 136 HOH HOH . O 4 HOH C 4 404 81 HOH HOH . O 4 HOH C 5 405 57 HOH HOH . O 4 HOH C 6 406 10 HOH HOH . O 4 HOH C 7 407 107 HOH HOH . O 4 HOH C 8 408 92 HOH HOH . O 4 HOH C 9 409 16 HOH HOH . O 4 HOH C 10 410 102 HOH HOH . O 4 HOH C 11 411 75 HOH HOH . O 4 HOH C 12 412 64 HOH HOH . O 4 HOH C 13 413 18 HOH HOH . O 4 HOH C 14 414 12 HOH HOH . O 4 HOH C 15 415 6 HOH HOH . O 4 HOH C 16 416 36 HOH HOH . O 4 HOH C 17 417 87 HOH HOH . O 4 HOH C 18 418 124 HOH HOH . O 4 HOH C 19 419 74 HOH HOH . O 4 HOH C 20 420 4 HOH HOH . O 4 HOH C 21 421 44 HOH HOH . O 4 HOH C 22 422 59 HOH HOH . O 4 HOH C 23 423 66 HOH HOH . O 4 HOH C 24 424 89 HOH HOH . O 4 HOH C 25 425 139 HOH HOH . O 4 HOH C 26 426 119 HOH HOH . O 4 HOH C 27 427 114 HOH HOH . O 4 HOH C 28 428 121 HOH HOH . O 4 HOH C 29 429 101 HOH HOH . O 4 HOH C 30 430 67 HOH HOH . O 4 HOH C 31 431 30 HOH HOH . O 4 HOH C 32 432 86 HOH HOH . O 4 HOH C 33 433 49 HOH HOH . O 4 HOH C 34 434 2 HOH HOH . O 4 HOH C 35 435 159 HOH HOH . O 4 HOH C 36 436 50 HOH HOH . O 4 HOH C 37 437 32 HOH HOH . O 4 HOH C 38 438 65 HOH HOH . O 4 HOH C 39 439 69 HOH HOH . P 4 HOH D 1 401 55 HOH HOH . P 4 HOH D 2 402 85 HOH HOH . P 4 HOH D 3 403 71 HOH HOH . P 4 HOH D 4 404 73 HOH HOH . P 4 HOH D 5 405 68 HOH HOH . P 4 HOH D 6 406 8 HOH HOH . P 4 HOH D 7 407 3 HOH HOH . P 4 HOH D 8 408 20 HOH HOH . P 4 HOH D 9 409 58 HOH HOH . P 4 HOH D 10 410 38 HOH HOH . P 4 HOH D 11 411 77 HOH HOH . P 4 HOH D 12 412 127 HOH HOH . P 4 HOH D 13 413 61 HOH HOH . P 4 HOH D 14 414 45 HOH HOH . P 4 HOH D 15 415 94 HOH HOH . P 4 HOH D 16 416 104 HOH HOH . P 4 HOH D 17 417 138 HOH HOH . P 4 HOH D 18 418 39 HOH HOH . P 4 HOH D 19 419 17 HOH HOH . P 4 HOH D 20 420 56 HOH HOH . P 4 HOH D 21 421 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . I 2 -32.778 2.681 -35.363 1 36.34 ? PB ADP 301 C 1 HETATM 2 O O1B ADP . . . I 2 -33.002 3.801 -36.348 1 34.67 ? O1B ADP 301 C 1 HETATM 3 O O2B ADP . . . I 2 -32.516 1.337 -35.985 1 33.66 ? O2B ADP 301 C 1 HETATM 4 O O3B ADP . . . I 2 -31.874 3.085 -34.194 1 33.05 ? O3B ADP 301 C 1 HETATM 5 P PA ADP . . . I 2 -34.85 1.145 -34.244 1 39.6 ? PA ADP 301 C 1 HETATM 6 O O1A ADP . . . I 2 -35.421 0.409 -35.45 1 35.78 ? O1A ADP 301 C 1 HETATM 7 O O2A ADP . . . I 2 -33.808 0.489 -33.355 1 35.01 ? O2A ADP 301 C 1 HETATM 8 O O3A ADP . . . I 2 -34.252 2.551 -34.753 1 33.34 ? O3A ADP 301 C 1 HETATM 9 O O5' ADP . . . I 2 -36.073 1.653 -33.291 1 36.57 ? O5' ADP 301 C 1 HETATM 10 C C5' ADP . . . I 2 -37.168 2.43 -33.808 1 38.24 ? C5' ADP 301 C 1 HETATM 11 C C4' ADP . . . I 2 -38.382 2.363 -32.868 1 40 ? C4' ADP 301 C 1 HETATM 12 O O4' ADP . . . I 2 -39.519 3.07 -33.417 1 37.93 ? O4' ADP 301 C 1 HETATM 13 C C3' ADP . . . I 2 -38.805 0.922 -32.643 1 39.55 ? C3' ADP 301 C 1 HETATM 14 O O3' ADP . . . I 2 -39.033 0.708 -31.241 1 39.98 ? O3' ADP 301 C 1 HETATM 15 C C2' ADP . . . I 2 -40.039 0.827 -33.534 1 38.89 ? C2' ADP 301 C 1 HETATM 16 O O2' ADP . . . I 2 -40.954 -0.182 -33.131 1 43.29 ? O2' ADP 301 C 1 HETATM 17 C C1' ADP . . . I 2 -40.65 2.21 -33.503 1 37.53 ? C1' ADP 301 C 1 HETATM 18 N N9 ADP . . . I 2 -41.411 2.565 -34.736 1 38.93 ? N9 ADP 301 C 1 HETATM 19 C C8 ADP . . . I 2 -42.662 3.048 -34.738 1 38.81 ? C8 ADP 301 C 1 HETATM 20 N N7 ADP . . . I 2 -43.121 3.304 -35.984 1 40.06 ? N7 ADP 301 C 1 HETATM 21 C C5 ADP . . . I 2 -42.121 2.969 -36.823 1 40.43 ? C5 ADP 301 C 1 HETATM 22 C C6 ADP . . . I 2 -41.941 2.995 -38.29 1 39.59 ? C6 ADP 301 C 1 HETATM 23 N N6 ADP . . . I 2 -42.949 3.44 -39.077 1 39.74 ? N6 ADP 301 C 1 HETATM 24 N N1 ADP . . . I 2 -40.76 2.583 -38.8 1 39.48 ? N1 ADP 301 C 1 HETATM 25 C C2 ADP . . . I 2 -39.763 2.168 -37.989 1 38.94 ? C2 ADP 301 C 1 HETATM 26 N N3 ADP . . . I 2 -39.867 2.121 -36.65 1 38.05 ? N3 ADP 301 C 1 HETATM 27 C C4 ADP . . . I 2 -41.003 2.489 -36.01 1 37.59 ? C4 ADP 301 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 473 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #