data_8I1O # _model_server_result.job_id 0GSYHev3rmy1jbTnS22zFQ _model_server_result.datetime_utc '2024-11-26 19:47:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 8I1O # _exptl.entry_id 8I1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-PHOSPHOSULFATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.44 _cell.angle_gamma 90 _cell.entry_id 8I1O _cell.length_a 64.725 _cell.length_b 53.035 _cell.length_c 130.639 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C10 H14 N5 O10 P S' _chem_comp.formula_weight 427.284 _chem_comp.id ADX _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-PHOSPHOSULFATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SB O1B ADX doub 45 n n SB O2B ADX doub 46 n n SB O3B ADX sing 47 n n SB O3A ADX sing 48 n n O3B HOB3 ADX sing 49 n n PA O1A ADX doub 50 n n PA O2A ADX sing 51 n n PA O3A ADX sing 52 n n PA O5' ADX sing 53 n n O2A HOA2 ADX sing 54 n n O5' C5' ADX sing 55 n n C5' C4' ADX sing 56 n n C5' H5' ADX sing 57 n n C5' "H5''" ADX sing 58 n n C4' O4' ADX sing 59 n n C4' C3' ADX sing 60 n n C4' H4' ADX sing 61 n n O4' C1' ADX sing 62 n n C3' O3' ADX sing 63 n n C3' C2' ADX sing 64 n n C3' H3' ADX sing 65 n n O3' HO3' ADX sing 66 n n C2' O2' ADX sing 67 n n C2' C1' ADX sing 68 n n C2' H2' ADX sing 69 n n O2' HO2' ADX sing 70 n n C1' N9 ADX sing 71 n n C1' H1' ADX sing 72 n n N9 C8 ADX sing 73 n y N9 C4 ADX sing 74 n y C8 N7 ADX doub 75 n y C8 H8 ADX sing 76 n n N7 C5 ADX sing 77 n y C5 C6 ADX sing 78 n y C5 C4 ADX doub 79 n y C6 N6 ADX sing 80 n n C6 N1 ADX doub 81 n y N6 HN61 ADX sing 82 n n N6 HN62 ADX sing 83 n n N1 C2 ADX sing 84 n y C2 N3 ADX doub 85 n y C2 H2 ADX sing 86 n n N3 C4 ADX sing 87 n y # _atom_sites.entry_id 8I1O _atom_sites.fract_transf_matrix[1][1] 0.01545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 301 301 ADP ADP . F 3 ADX A 1 302 302 ADX ADX . G 2 ADP B 1 301 301 ADP ADP . H 3 ADX B 1 302 302 ADX ADX . I 2 ADP C 1 301 301 ADP ADP . J 3 ADX C 1 302 302 ADX ADX . K 2 ADP D 1 301 301 ADP ADP . L 3 ADX D 1 302 302 ADX ADX . M 4 HOH A 1 401 97 HOH HOH . M 4 HOH A 2 402 76 HOH HOH . M 4 HOH A 3 403 106 HOH HOH . M 4 HOH A 4 404 1 HOH HOH . M 4 HOH A 5 405 34 HOH HOH . M 4 HOH A 6 406 132 HOH HOH . M 4 HOH A 7 407 9 HOH HOH . M 4 HOH A 8 408 43 HOH HOH . M 4 HOH A 9 409 7 HOH HOH . M 4 HOH A 10 410 141 HOH HOH . M 4 HOH A 11 411 13 HOH HOH . M 4 HOH A 12 412 129 HOH HOH . M 4 HOH A 13 413 11 HOH HOH . M 4 HOH A 14 414 123 HOH HOH . M 4 HOH A 15 415 78 HOH HOH . M 4 HOH A 16 416 79 HOH HOH . M 4 HOH A 17 417 135 HOH HOH . M 4 HOH A 18 418 40 HOH HOH . M 4 HOH A 19 419 24 HOH HOH . M 4 HOH A 20 420 48 HOH HOH . M 4 HOH A 21 421 120 HOH HOH . M 4 HOH A 22 422 131 HOH HOH . M 4 HOH A 23 423 21 HOH HOH . M 4 HOH A 24 424 115 HOH HOH . M 4 HOH A 25 425 51 HOH HOH . M 4 HOH A 26 426 27 HOH HOH . M 4 HOH A 27 427 63 HOH HOH . M 4 HOH A 28 428 19 HOH HOH . M 4 HOH A 29 429 113 HOH HOH . M 4 HOH A 30 430 60 HOH HOH . M 4 HOH A 31 431 140 HOH HOH . M 4 HOH A 32 432 35 HOH HOH . M 4 HOH A 33 433 93 HOH HOH . M 4 HOH A 34 434 22 HOH HOH . M 4 HOH A 35 435 82 HOH HOH . M 4 HOH A 36 436 72 HOH HOH . M 4 HOH A 37 437 142 HOH HOH . M 4 HOH A 38 438 145 HOH HOH . M 4 HOH A 39 439 149 HOH HOH . M 4 HOH A 40 440 137 HOH HOH . M 4 HOH A 41 441 103 HOH HOH . M 4 HOH A 42 442 151 HOH HOH . M 4 HOH A 43 443 26 HOH HOH . M 4 HOH A 44 444 116 HOH HOH . M 4 HOH A 45 445 152 HOH HOH . M 4 HOH A 46 446 148 HOH HOH . M 4 HOH A 47 447 112 HOH HOH . M 4 HOH A 48 448 146 HOH HOH . M 4 HOH A 49 449 144 HOH HOH . M 4 HOH A 50 450 100 HOH HOH . N 4 HOH B 1 401 95 HOH HOH . N 4 HOH B 2 402 90 HOH HOH . N 4 HOH B 3 403 96 HOH HOH . N 4 HOH B 4 404 42 HOH HOH . N 4 HOH B 5 405 80 HOH HOH . N 4 HOH B 6 406 28 HOH HOH . N 4 HOH B 7 407 52 HOH HOH . N 4 HOH B 8 408 15 HOH HOH . N 4 HOH B 9 409 23 HOH HOH . N 4 HOH B 10 410 118 HOH HOH . N 4 HOH B 11 411 99 HOH HOH . N 4 HOH B 12 412 5 HOH HOH . N 4 HOH B 13 413 156 HOH HOH . N 4 HOH B 14 414 41 HOH HOH . N 4 HOH B 15 415 25 HOH HOH . N 4 HOH B 16 416 54 HOH HOH . N 4 HOH B 17 417 105 HOH HOH . N 4 HOH B 18 418 154 HOH HOH . N 4 HOH B 19 419 98 HOH HOH . N 4 HOH B 20 420 83 HOH HOH . N 4 HOH B 21 421 53 HOH HOH . N 4 HOH B 22 422 29 HOH HOH . N 4 HOH B 23 423 110 HOH HOH . N 4 HOH B 24 424 31 HOH HOH . N 4 HOH B 25 425 126 HOH HOH . N 4 HOH B 26 426 14 HOH HOH . N 4 HOH B 27 427 33 HOH HOH . N 4 HOH B 28 428 91 HOH HOH . N 4 HOH B 29 429 158 HOH HOH . N 4 HOH B 30 430 155 HOH HOH . N 4 HOH B 31 431 134 HOH HOH . N 4 HOH B 32 432 62 HOH HOH . N 4 HOH B 33 433 153 HOH HOH . N 4 HOH B 34 434 37 HOH HOH . N 4 HOH B 35 435 47 HOH HOH . N 4 HOH B 36 436 130 HOH HOH . N 4 HOH B 37 437 150 HOH HOH . N 4 HOH B 38 438 88 HOH HOH . N 4 HOH B 39 439 46 HOH HOH . N 4 HOH B 40 440 70 HOH HOH . N 4 HOH B 41 441 157 HOH HOH . N 4 HOH B 42 442 147 HOH HOH . O 4 HOH C 1 401 125 HOH HOH . O 4 HOH C 2 402 108 HOH HOH . O 4 HOH C 3 403 136 HOH HOH . O 4 HOH C 4 404 81 HOH HOH . O 4 HOH C 5 405 57 HOH HOH . O 4 HOH C 6 406 10 HOH HOH . O 4 HOH C 7 407 107 HOH HOH . O 4 HOH C 8 408 92 HOH HOH . O 4 HOH C 9 409 16 HOH HOH . O 4 HOH C 10 410 102 HOH HOH . O 4 HOH C 11 411 75 HOH HOH . O 4 HOH C 12 412 64 HOH HOH . O 4 HOH C 13 413 18 HOH HOH . O 4 HOH C 14 414 12 HOH HOH . O 4 HOH C 15 415 6 HOH HOH . O 4 HOH C 16 416 36 HOH HOH . O 4 HOH C 17 417 87 HOH HOH . O 4 HOH C 18 418 124 HOH HOH . O 4 HOH C 19 419 74 HOH HOH . O 4 HOH C 20 420 4 HOH HOH . O 4 HOH C 21 421 44 HOH HOH . O 4 HOH C 22 422 59 HOH HOH . O 4 HOH C 23 423 66 HOH HOH . O 4 HOH C 24 424 89 HOH HOH . O 4 HOH C 25 425 139 HOH HOH . O 4 HOH C 26 426 119 HOH HOH . O 4 HOH C 27 427 114 HOH HOH . O 4 HOH C 28 428 121 HOH HOH . O 4 HOH C 29 429 101 HOH HOH . O 4 HOH C 30 430 67 HOH HOH . O 4 HOH C 31 431 30 HOH HOH . O 4 HOH C 32 432 86 HOH HOH . O 4 HOH C 33 433 49 HOH HOH . O 4 HOH C 34 434 2 HOH HOH . O 4 HOH C 35 435 159 HOH HOH . O 4 HOH C 36 436 50 HOH HOH . O 4 HOH C 37 437 32 HOH HOH . O 4 HOH C 38 438 65 HOH HOH . O 4 HOH C 39 439 69 HOH HOH . P 4 HOH D 1 401 55 HOH HOH . P 4 HOH D 2 402 85 HOH HOH . P 4 HOH D 3 403 71 HOH HOH . P 4 HOH D 4 404 73 HOH HOH . P 4 HOH D 5 405 68 HOH HOH . P 4 HOH D 6 406 8 HOH HOH . P 4 HOH D 7 407 3 HOH HOH . P 4 HOH D 8 408 20 HOH HOH . P 4 HOH D 9 409 58 HOH HOH . P 4 HOH D 10 410 38 HOH HOH . P 4 HOH D 11 411 77 HOH HOH . P 4 HOH D 12 412 127 HOH HOH . P 4 HOH D 13 413 61 HOH HOH . P 4 HOH D 14 414 45 HOH HOH . P 4 HOH D 15 415 94 HOH HOH . P 4 HOH D 16 416 104 HOH HOH . P 4 HOH D 17 417 138 HOH HOH . P 4 HOH D 18 418 39 HOH HOH . P 4 HOH D 19 419 17 HOH HOH . P 4 HOH D 20 420 56 HOH HOH . P 4 HOH D 21 421 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SB ADX . . . H 3 5.213 1.919 -23.029 1 36.19 ? SB ADX 302 B 1 HETATM 2 O O1B ADX . . . H 3 4.379 0.705 -23.504 1 38.23 ? O1B ADX 302 B 1 HETATM 3 O O2B ADX . . . H 3 6.117 2.391 -24.15 1 40.23 ? O2B ADX 302 B 1 HETATM 4 O O3B ADX . . . H 3 4.238 3.034 -22.597 1 34.2 ? O3B ADX 302 B 1 HETATM 5 P PA ADX . . . H 3 5.576 1.369 -20.345 1 42.52 ? PA ADX 302 B 1 HETATM 6 O O1A ADX . . . H 3 5.084 0.039 -19.887 1 43.19 ? O1A ADX 302 B 1 HETATM 7 O O2A ADX . . . H 3 5.823 2.53 -19.422 1 37.51 ? O2A ADX 302 B 1 HETATM 8 O O3A ADX . . . H 3 6.156 1.514 -21.87 1 40.82 ? O3A ADX 302 B 1 HETATM 9 O O5' ADX . . . H 3 7.09 0.799 -20.078 1 41.82 ? O5' ADX 302 B 1 HETATM 10 C C5' ADX . . . H 3 7.752 1.13 -18.859 1 46.77 ? C5' ADX 302 B 1 HETATM 11 C C4' ADX . . . H 3 8.697 0.003 -18.531 1 50.63 ? C4' ADX 302 B 1 HETATM 12 O O4' ADX . . . H 3 9.226 -0.223 -19.784 1 52.22 ? O4' ADX 302 B 1 HETATM 13 C C3' ADX . . . H 3 9.926 0.475 -17.793 1 53.11 ? C3' ADX 302 B 1 HETATM 14 O O3' ADX . . . H 3 9.756 0.498 -16.351 1 64.09 ? O3' ADX 302 B 1 HETATM 15 C C2' ADX . . . H 3 10.851 -0.475 -18.251 1 51.88 ? C2' ADX 302 B 1 HETATM 16 O O2' ADX . . . H 3 11.971 -0.886 -17.63 1 54.39 ? O2' ADX 302 B 1 HETATM 17 C C1' ADX . . . H 3 10.398 -0.831 -19.454 1 51.5 ? C1' ADX 302 B 1 HETATM 18 N N9 ADX . . . H 3 11.01 -1.53 -20.412 1 48.91 ? N9 ADX 302 B 1 HETATM 19 C C8 ADX . . . H 3 11.529 -2.738 -20.632 1 48.93 ? C8 ADX 302 B 1 HETATM 20 N N7 ADX . . . H 3 11.985 -2.8 -21.904 1 45.49 ? N7 ADX 302 B 1 HETATM 21 C C5 ADX . . . H 3 11.778 -1.608 -22.487 1 46.95 ? C5 ADX 302 B 1 HETATM 22 C C6 ADX . . . H 3 12.039 -1.078 -23.715 1 45.33 ? C6 ADX 302 B 1 HETATM 23 N N6 ADX . . . H 3 12.637 -1.826 -24.634 1 43.17 ? N6 ADX 302 B 1 HETATM 24 N N1 ADX . . . H 3 11.716 0.18 -24.038 1 44.21 ? N1 ADX 302 B 1 HETATM 25 C C2 ADX . . . H 3 11.089 0.967 -23.079 1 44.64 ? C2 ADX 302 B 1 HETATM 26 N N3 ADX . . . H 3 10.835 0.41 -21.836 1 43.28 ? N3 ADX 302 B 1 HETATM 27 C C4 ADX . . . H 3 11.182 -0.849 -21.556 1 46.69 ? C4 ADX 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #