data_8I22 # _model_server_result.job_id ho5B8wN_OBPOVEZIqzKjrQ _model_server_result.datetime_utc '2024-12-05 22:02:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 8I22 # _exptl.entry_id 8I22 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 188.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-ethoxy-7-oxidanylidene-heptanoic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I22 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C9 H16 O4' _chem_comp.formula_weight 188.221 _chem_comp.id OBK _chem_comp.mon_nstd_flag . _chem_comp.name '7-ethoxy-7-oxidanylidene-heptanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'pimelic acid monoethyl ester' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 OBK sing 235 n n C4 C5 OBK sing 236 n n C1 C2 OBK sing 237 n n C3 O1 OBK sing 238 n n C3 O2 OBK doub 239 n n O1 C2 OBK sing 240 n n C6 C5 OBK sing 241 n n C6 C7 OBK sing 242 n n C8 C7 OBK sing 243 n n C8 C9 OBK sing 244 n n O3 C9 OBK doub 245 n n C9 O4 OBK sing 246 n n C4 H1 OBK sing 247 n n C4 H2 OBK sing 248 n n C8 H3 OBK sing 249 n n C8 H4 OBK sing 250 n n C6 H5 OBK sing 251 n n C6 H6 OBK sing 252 n n C7 H7 OBK sing 253 n n C7 H8 OBK sing 254 n n C1 H9 OBK sing 255 n n C1 H10 OBK sing 256 n n C1 H11 OBK sing 257 n n C5 H12 OBK sing 258 n n C5 H13 OBK sing 259 n n C2 H14 OBK sing 260 n n C2 H15 OBK sing 261 n n O4 H16 OBK sing 262 n n # _atom_sites.entry_id 8I22 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 OBK A 1 601 601 OBK EC7 . H 2 OBK F 1 601 601 OBK EC7 . I 2 OBK B 1 601 601 OBK EC7 . J 2 OBK C 1 601 601 OBK EC7 . K 2 OBK D 1 601 601 OBK EC7 . L 2 OBK E 1 601 601 OBK EC7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 OBK . . . L 2 179.688 189.176 148.249 1 6.42 ? C4 OBK 601 E 1 HETATM 2 C C8 OBK . . . L 2 175.063 191.071 148.905 1 16.34 ? C8 OBK 601 E 1 HETATM 3 C C9 OBK . . . L 2 175.146 192.141 149.991 1 21.06 ? C9 OBK 601 E 1 HETATM 4 C C3 OBK . . . L 2 180.75 188.232 148.796 1 13.83 ? C3 OBK 601 E 1 HETATM 5 C C6 OBK . . . L 2 177.455 190.238 148.827 1 11.47 ? C6 OBK 601 E 1 HETATM 6 C C7 OBK . . . L 2 176.007 189.902 149.172 1 11.04 ? C7 OBK 601 E 1 HETATM 7 C C1 OBK . . . L 2 183.666 186.829 148.716 1 12.05 ? C1 OBK 601 E 1 HETATM 8 C C5 OBK . . . L 2 178.373 189.033 149.003 1 10.72 ? C5 OBK 601 E 1 HETATM 9 C C2 OBK . . . L 2 182.908 187.804 149.611 1 15.7 ? C2 OBK 601 E 1 HETATM 10 O O1 OBK . . . L 2 182.094 188.616 148.813 1 18.85 ? O1 OBK 601 E 1 HETATM 11 O O2 OBK . . . L 2 180.43 187.17 149.205 1 20.86 ? O2 OBK 601 E 1 HETATM 12 O O3 OBK . . . L 2 175.073 193.358 149.682 1 25.1 ? O3 OBK 601 E 1 HETATM 13 O O4 OBK . . . L 2 175.285 191.806 151.196 1 23.15 ? O4 OBK 601 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #