data_8I2A # _model_server_result.job_id uQq_QBplMqnjozq5H8aS7w _model_server_result.datetime_utc '2024-11-22 08:03:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":404}' # _entry.id 8I2A # _exptl.entry_id 8I2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 148.162 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-METHOXYBENZIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.3 _cell.angle_gamma 90 _cell.entry_id 8I2A _cell.length_a 61.741 _cell.length_b 80.539 _cell.length_c 77.258 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H8 N2 O' _chem_comp.formula_weight 148.162 _chem_comp.id 5OB _chem_comp.mon_nstd_flag . _chem_comp.name 5-METHOXYBENZIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 5OB sing 1 n y N3 C3A 5OB sing 2 n y N3 H31N 5OB sing 3 n n N1 C2 5OB doub 4 n y N1 C7A 5OB sing 5 n y C2 H21 5OB sing 6 n n C7A C3A 5OB doub 7 n y C7A C7 5OB sing 8 n y C3A C4 5OB sing 9 n y C4 C5 5OB doub 10 n y C4 H41 5OB sing 11 n n C5 C6 5OB sing 12 n y C5 O10 5OB sing 13 n n C6 C7 5OB doub 14 n y C6 H61 5OB sing 15 n n C7 H71 5OB sing 16 n n O10 C11 5OB sing 17 n n C11 H111 5OB sing 18 n n C11 H112 5OB sing 19 n n C11 H113 5OB sing 20 n n # _atom_sites.entry_id 8I2A _atom_sites.fract_transf_matrix[1][1] 0.016197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004737 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 2 SO4 SO4 . D 3 TYM B 1 401 401 TYM TYM . E 4 EDO B 1 402 1 EDO EDO . F 2 SO4 B 1 403 1 SO4 SO4 . G 5 5OB B 1 404 1 5OB 5OB . H 6 HOH A 1 501 64 HOH HOH . H 6 HOH A 2 502 78 HOH HOH . H 6 HOH A 3 503 80 HOH HOH . H 6 HOH A 4 504 61 HOH HOH . H 6 HOH A 5 505 77 HOH HOH . H 6 HOH A 6 506 35 HOH HOH . H 6 HOH A 7 507 11 HOH HOH . H 6 HOH A 8 508 70 HOH HOH . H 6 HOH A 9 509 18 HOH HOH . H 6 HOH A 10 510 52 HOH HOH . H 6 HOH A 11 511 49 HOH HOH . H 6 HOH A 12 512 26 HOH HOH . H 6 HOH A 13 513 73 HOH HOH . H 6 HOH A 14 514 21 HOH HOH . H 6 HOH A 15 515 23 HOH HOH . H 6 HOH A 16 516 34 HOH HOH . H 6 HOH A 17 517 112 HOH HOH . H 6 HOH A 18 518 39 HOH HOH . H 6 HOH A 19 519 109 HOH HOH . H 6 HOH A 20 520 13 HOH HOH . H 6 HOH A 21 521 12 HOH HOH . H 6 HOH A 22 522 104 HOH HOH . H 6 HOH A 23 523 50 HOH HOH . H 6 HOH A 24 524 115 HOH HOH . H 6 HOH A 25 525 47 HOH HOH . H 6 HOH A 26 526 6 HOH HOH . H 6 HOH A 27 527 63 HOH HOH . H 6 HOH A 28 528 76 HOH HOH . H 6 HOH A 29 529 71 HOH HOH . H 6 HOH A 30 530 46 HOH HOH . H 6 HOH A 31 531 113 HOH HOH . H 6 HOH A 32 532 40 HOH HOH . H 6 HOH A 33 533 87 HOH HOH . H 6 HOH A 34 534 62 HOH HOH . H 6 HOH A 35 535 32 HOH HOH . H 6 HOH A 36 536 1 HOH HOH . H 6 HOH A 37 537 60 HOH HOH . H 6 HOH A 38 538 107 HOH HOH . H 6 HOH A 39 539 105 HOH HOH . H 6 HOH A 40 540 53 HOH HOH . H 6 HOH A 41 541 110 HOH HOH . H 6 HOH A 42 542 103 HOH HOH . H 6 HOH A 43 543 106 HOH HOH . H 6 HOH A 44 544 85 HOH HOH . H 6 HOH A 45 545 114 HOH HOH . H 6 HOH A 46 546 51 HOH HOH . H 6 HOH A 47 547 108 HOH HOH . H 6 HOH A 48 548 79 HOH HOH . H 6 HOH A 49 549 119 HOH HOH . H 6 HOH A 50 550 101 HOH HOH . H 6 HOH A 51 551 86 HOH HOH . H 6 HOH A 52 552 100 HOH HOH . H 6 HOH A 53 553 102 HOH HOH . H 6 HOH A 54 554 84 HOH HOH . H 6 HOH A 55 555 88 HOH HOH . I 6 HOH B 1 501 75 HOH HOH . I 6 HOH B 2 502 55 HOH HOH . I 6 HOH B 3 503 30 HOH HOH . I 6 HOH B 4 504 5 HOH HOH . I 6 HOH B 5 505 91 HOH HOH . I 6 HOH B 6 506 7 HOH HOH . I 6 HOH B 7 507 67 HOH HOH . I 6 HOH B 8 508 4 HOH HOH . I 6 HOH B 9 509 2 HOH HOH . I 6 HOH B 10 510 59 HOH HOH . I 6 HOH B 11 511 9 HOH HOH . I 6 HOH B 12 512 15 HOH HOH . I 6 HOH B 13 513 27 HOH HOH . I 6 HOH B 14 514 17 HOH HOH . I 6 HOH B 15 515 68 HOH HOH . I 6 HOH B 16 516 83 HOH HOH . I 6 HOH B 17 517 10 HOH HOH . I 6 HOH B 18 518 14 HOH HOH . I 6 HOH B 19 519 43 HOH HOH . I 6 HOH B 20 520 42 HOH HOH . I 6 HOH B 21 521 31 HOH HOH . I 6 HOH B 22 522 22 HOH HOH . I 6 HOH B 23 523 25 HOH HOH . I 6 HOH B 24 524 29 HOH HOH . I 6 HOH B 25 525 98 HOH HOH . I 6 HOH B 26 526 116 HOH HOH . I 6 HOH B 27 527 57 HOH HOH . I 6 HOH B 28 528 38 HOH HOH . I 6 HOH B 29 529 41 HOH HOH . I 6 HOH B 30 530 16 HOH HOH . I 6 HOH B 31 531 8 HOH HOH . I 6 HOH B 32 532 37 HOH HOH . I 6 HOH B 33 533 44 HOH HOH . I 6 HOH B 34 534 24 HOH HOH . I 6 HOH B 35 535 45 HOH HOH . I 6 HOH B 36 536 54 HOH HOH . I 6 HOH B 37 537 118 HOH HOH . I 6 HOH B 38 538 94 HOH HOH . I 6 HOH B 39 539 33 HOH HOH . I 6 HOH B 40 540 82 HOH HOH . I 6 HOH B 41 541 69 HOH HOH . I 6 HOH B 42 542 97 HOH HOH . I 6 HOH B 43 543 3 HOH HOH . I 6 HOH B 44 544 20 HOH HOH . I 6 HOH B 45 545 56 HOH HOH . I 6 HOH B 46 546 58 HOH HOH . I 6 HOH B 47 547 72 HOH HOH . I 6 HOH B 48 548 36 HOH HOH . I 6 HOH B 49 549 19 HOH HOH . I 6 HOH B 50 550 89 HOH HOH . I 6 HOH B 51 551 93 HOH HOH . I 6 HOH B 52 552 92 HOH HOH . I 6 HOH B 53 553 48 HOH HOH . I 6 HOH B 54 554 117 HOH HOH . I 6 HOH B 55 555 81 HOH HOH . I 6 HOH B 56 556 66 HOH HOH . I 6 HOH B 57 557 74 HOH HOH . I 6 HOH B 58 558 95 HOH HOH . I 6 HOH B 59 559 96 HOH HOH . I 6 HOH B 60 560 90 HOH HOH . I 6 HOH B 61 561 28 HOH HOH . I 6 HOH B 62 562 99 HOH HOH . I 6 HOH B 63 563 65 HOH HOH . I 6 HOH B 64 564 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5OB . . . G 5 7.662 2.462 8.896 1 25.57 ? N3 5OB 404 B 1 HETATM 2 N N1 5OB . . . G 5 6.883 0.385 9.024 1 25.51 ? N1 5OB 404 B 1 HETATM 3 C C2 5OB . . . G 5 6.545 1.7 8.984 1 25.31 ? C2 5OB 404 B 1 HETATM 4 C C7A 5OB . . . G 5 8.221 0.274 8.955 1 25.23 ? C7A 5OB 404 B 1 HETATM 5 C C3A 5OB . . . G 5 8.73 1.658 8.872 1 25.28 ? C3A 5OB 404 B 1 HETATM 6 C C4 5OB . . . G 5 10.098 1.876 8.796 1 25.22 ? C4 5OB 404 B 1 HETATM 7 C C5 5OB . . . G 5 10.983 0.789 8.801 1 25.24 ? C5 5OB 404 B 1 HETATM 8 C C6 5OB . . . G 5 10.495 -0.519 8.873 1 25.22 ? C6 5OB 404 B 1 HETATM 9 C C7 5OB . . . G 5 9.125 -0.784 8.95 1 25.16 ? C7 5OB 404 B 1 HETATM 10 O O10 5OB . . . G 5 12.345 0.939 8.716 1 25.34 ? O10 5OB 404 B 1 HETATM 11 C C11 5OB . . . G 5 13.082 2.079 9.167 1 25.48 ? C11 5OB 404 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #