data_8I2B
#
_model_server_result.job_id            awXekZ4uYKOFwvqSSknoVQ 
_model_server_result.datetime_utc      '2025-02-18 13:07:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i2b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8I2B 
#
_exptl.entry_id    8I2B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              461.457 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N1-[[4-(4-aminophenyl)sulfanyl-3-(trifluoromethyl)phenyl]methoxy]benzene-1,4-dicarboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8I2B 
_cell.length_a            91.318 
_cell.length_b            91.318 
_cell.length_c            143.674 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I2B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 133 A CYS 141 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 A SG CYS 136 A CYS 144 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc3 A SG CYS 158 A CYS 166 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc4 A SG CYS 169 A CYS 177 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc5 B SG CYS 133 B CYS 141 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc6 B SG CYS 136 B CYS 144 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc7 B SG CYS 158 B CYS 166 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc8 B SG CYS 169 B CYS 177 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
#
_chem_comp.formula           'C22 H18 F3 N3 O3 S' 
_chem_comp.formula_weight    461.457 
_chem_comp.id                O5L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N1-[[4-(4-aminophenyl)sulfanyl-3-(trifluoromethyl)phenyl]methoxy]benzene-1,4-dicarboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F3 C22 O5L sing 299 n n 
F1 C22 O5L sing 300 n n 
F2 C22 O5L sing 301 n n 
C22 C6 O5L sing 302 n n 
C18 C17 O5L doub 303 n y 
C18 C19 O5L sing 304 n y 
C17 C16 O5L sing 305 n y 
C6 C5 O5L doub 306 n y 
C6 C7 O5L sing 307 n y 
C5 C4 O5L sing 308 n y 
N3 C19 O5L sing 309 n n 
C19 C20 O5L doub 310 n y 
C16 S1 O5L sing 311 n n 
C16 C21 O5L doub 312 n y 
S1 C7 O5L sing 313 n n 
C7 C8 O5L doub 314 n y 
C4 C3 O5L sing 315 n n 
C4 C9 O5L doub 316 n y 
O3 C15 O5L doub 317 n n 
C3 O2 O5L sing 318 n n 
C20 C21 O5L sing 319 n y 
C13 C14 O5L doub 320 n y 
C13 C12 O5L sing 321 n y 
C8 C9 O5L sing 322 n y 
C15 C12 O5L sing 323 n n 
C15 N2 O5L sing 324 n n 
C14 C2 O5L sing 325 n y 
O2 N1 O5L sing 326 n n 
C12 C11 O5L doub 327 n y 
N1 C1 O5L sing 328 n n 
C2 C1 O5L sing 329 n n 
C2 C10 O5L doub 330 n y 
C1 O1 O5L doub 331 n n 
C11 C10 O5L sing 332 n y 
N1 H1 O5L sing 333 n n 
C3 H2 O5L sing 334 n n 
C3 H3 O5L sing 335 n n 
C5 H4 O5L sing 336 n n 
C8 H5 O5L sing 337 n n 
C9 H6 O5L sing 338 n n 
C10 H7 O5L sing 339 n n 
C11 H8 O5L sing 340 n n 
C13 H9 O5L sing 341 n n 
C14 H10 O5L sing 342 n n 
N2 H11 O5L sing 343 n n 
N2 H12 O5L sing 344 n n 
C17 H13 O5L sing 345 n n 
C18 H14 O5L sing 346 n n 
C20 H15 O5L sing 347 n n 
C21 H16 O5L sing 348 n n 
N3 H17 O5L sing 349 n n 
N3 H18 O5L sing 350 n n 
#
_atom_sites.entry_id                     8I2B 
_atom_sites.fract_transf_matrix[1][1]    0.010951 
_atom_sites.fract_transf_matrix[1][2]    0.006322 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012645 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PG4 A 1 401 401 PG4 PG4 . 
D 3 O5L A 1 402 501 O5L UNL . 
E 4 AR6 A 1 403 701 AR6 AR6 . 
F 5 ZN A 1 404 2 ZN ZN . 
G 2 PG4 B 1 601 601 PG4 PG4 . 
H 2 PG4 B 1 602 401 PG4 PG4 . 
I 3 O5L B 1 603 501 O5L UNL . 
J 4 AR6 B 1 604 601 AR6 AR6 . 
K 5 ZN B 1 605 1 ZN ZN . 
L 6 SO4 B 1 606 1 SO4 SO4 . 
M 6 SO4 B 1 607 2 SO4 SO4 . 
N 6 SO4 B 1 608 3 SO4 SO4 . 
O 6 SO4 B 1 609 4 SO4 SO4 . 
P 6 SO4 B 1 610 5 SO4 SO4 . 
Q 7 HOH A 1 501 35 HOH HOH . 
Q 7 HOH A 2 502 53 HOH HOH . 
Q 7 HOH A 3 503 16 HOH HOH . 
Q 7 HOH A 4 504 18 HOH HOH . 
Q 7 HOH A 5 505 55 HOH HOH . 
Q 7 HOH A 6 506 47 HOH HOH . 
Q 7 HOH A 7 507 26 HOH HOH . 
Q 7 HOH A 8 508 21 HOH HOH . 
Q 7 HOH A 9 509 32 HOH HOH . 
Q 7 HOH A 10 510 23 HOH HOH . 
Q 7 HOH A 11 511 36 HOH HOH . 
Q 7 HOH A 12 512 62 HOH HOH . 
Q 7 HOH A 13 513 25 HOH HOH . 
Q 7 HOH A 14 514 56 HOH HOH . 
Q 7 HOH A 15 515 39 HOH HOH . 
Q 7 HOH A 16 516 60 HOH HOH . 
Q 7 HOH A 17 517 17 HOH HOH . 
Q 7 HOH A 18 518 40 HOH HOH . 
Q 7 HOH A 19 519 50 HOH HOH . 
Q 7 HOH A 20 520 43 HOH HOH . 
Q 7 HOH A 21 521 58 HOH HOH . 
Q 7 HOH A 22 522 54 HOH HOH . 
Q 7 HOH A 23 523 22 HOH HOH . 
Q 7 HOH A 24 524 33 HOH HOH . 
Q 7 HOH A 25 525 24 HOH HOH . 
Q 7 HOH A 26 526 52 HOH HOH . 
Q 7 HOH A 27 527 19 HOH HOH . 
Q 7 HOH A 28 528 45 HOH HOH . 
Q 7 HOH A 29 529 46 HOH HOH . 
Q 7 HOH A 30 530 44 HOH HOH . 
Q 7 HOH A 31 531 20 HOH HOH . 
Q 7 HOH A 32 532 49 HOH HOH . 
Q 7 HOH A 33 533 59 HOH HOH . 
Q 7 HOH A 34 534 48 HOH HOH . 
Q 7 HOH A 35 535 37 HOH HOH . 
Q 7 HOH A 36 536 61 HOH HOH . 
Q 7 HOH A 37 537 57 HOH HOH . 
Q 7 HOH A 38 538 34 HOH HOH . 
Q 7 HOH A 39 539 51 HOH HOH . 
R 7 HOH B 1 701 74 HOH HOH . 
R 7 HOH B 2 702 77 HOH HOH . 
R 7 HOH B 3 703 6 HOH HOH . 
R 7 HOH B 4 704 71 HOH HOH . 
R 7 HOH B 5 705 70 HOH HOH . 
R 7 HOH B 6 706 13 HOH HOH . 
R 7 HOH B 7 707 63 HOH HOH . 
R 7 HOH B 8 708 8 HOH HOH . 
R 7 HOH B 9 709 2 HOH HOH . 
R 7 HOH B 10 710 76 HOH HOH . 
R 7 HOH B 11 711 11 HOH HOH . 
R 7 HOH B 12 712 4 HOH HOH . 
R 7 HOH B 13 713 38 HOH HOH . 
R 7 HOH B 14 714 69 HOH HOH . 
R 7 HOH B 15 715 3 HOH HOH . 
R 7 HOH B 16 716 5 HOH HOH . 
R 7 HOH B 17 717 42 HOH HOH . 
R 7 HOH B 18 718 41 HOH HOH . 
R 7 HOH B 19 719 68 HOH HOH . 
R 7 HOH B 20 720 10 HOH HOH . 
R 7 HOH B 21 721 12 HOH HOH . 
R 7 HOH B 22 722 9 HOH HOH . 
R 7 HOH B 23 723 14 HOH HOH . 
R 7 HOH B 24 724 27 HOH HOH . 
R 7 HOH B 25 725 67 HOH HOH . 
R 7 HOH B 26 726 30 HOH HOH . 
R 7 HOH B 27 727 65 HOH HOH . 
R 7 HOH B 28 728 7 HOH HOH . 
R 7 HOH B 29 729 28 HOH HOH . 
R 7 HOH B 30 730 15 HOH HOH . 
R 7 HOH B 31 731 66 HOH HOH . 
R 7 HOH B 32 732 78 HOH HOH . 
R 7 HOH B 33 733 75 HOH HOH . 
R 7 HOH B 34 734 73 HOH HOH . 
R 7 HOH B 35 735 64 HOH HOH . 
R 7 HOH B 36 736 72 HOH HOH . 
R 7 HOH B 37 737 79 HOH HOH . 
R 7 HOH B 38 738 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 O5L . . . D 3 -25.004 25.278 19.658 1 59.25 ? C1 O5L 402 A 1 
HETATM 2 C C2 O5L . . . D 3 -24.77 23.839 19.406 1 55.04 ? C2 O5L 402 A 1 
HETATM 3 O O1 O5L . . . D 3 -25.843 25.614 20.499 1 59.24 ? O1 O5L 402 A 1 
HETATM 4 N N1 O5L . . . D 3 -24.148 26.094 19.031 1 66.71 ? N1 O5L 402 A 1 
HETATM 5 O O2 O5L . . . D 3 -24.512 27.384 18.655 1 85.17 ? O2 O5L 402 A 1 
HETATM 6 C C3 O5L . . . D 3 -25.132 27.352 17.364 1 105.84 ? C3 O5L 402 A 1 
HETATM 7 C C4 O5L . . . D 3 -26.223 28.389 17.294 1 116.31 ? C4 O5L 402 A 1 
HETATM 8 C C5 O5L . . . D 3 -26.698 28.823 16.066 1 131.35 ? C5 O5L 402 A 1 
HETATM 9 C C6 O5L . . . D 3 -27.703 29.781 15.955 1 145.37 ? C6 O5L 402 A 1 
HETATM 10 C C7 O5L . . . D 3 -28.242 30.316 17.134 1 139.08 ? C7 O5L 402 A 1 
HETATM 11 C C8 O5L . . . D 3 -27.769 29.881 18.371 1 128.8 ? C8 O5L 402 A 1 
HETATM 12 C C9 O5L . . . D 3 -26.772 28.929 18.444 1 120.72 ? C9 O5L 402 A 1 
HETATM 13 C C10 O5L . . . D 3 -25.498 22.816 19.997 1 49.45 ? C10 O5L 402 A 1 
HETATM 14 C C11 O5L . . . D 3 -25.169 21.499 19.737 1 45.98 ? C11 O5L 402 A 1 
HETATM 15 C C12 O5L . . . D 3 -24.096 21.193 18.909 1 56.45 ? C12 O5L 402 A 1 
HETATM 16 C C13 O5L . . . D 3 -23.374 22.221 18.336 1 59.47 ? C13 O5L 402 A 1 
HETATM 17 C C14 O5L . . . D 3 -23.705 23.532 18.578 1 53.07 ? C14 O5L 402 A 1 
HETATM 18 C C15 O5L . . . D 3 -23.632 19.824 18.517 1 57.61 ? C15 O5L 402 A 1 
HETATM 19 N N2 O5L . . . D 3 -23.619 18.864 19.432 1 45.08 ? N2 O5L 402 A 1 
HETATM 20 O O3 O5L . . . D 3 -23.222 19.647 17.357 1 57.67 ? O3 O5L 402 A 1 
HETATM 21 S S1 O5L . . . D 3 -29.525 31.557 17.103 1 141.35 ? S1 O5L 402 A 1 
HETATM 22 C C16 O5L . . . D 3 -28.629 33.064 16.803 1 129.13 ? C16 O5L 402 A 1 
HETATM 23 C C17 O5L . . . D 3 -28.824 33.779 15.625 1 117.71 ? C17 O5L 402 A 1 
HETATM 24 C C18 O5L . . . D 3 -28.112 34.94 15.39 1 115.64 ? C18 O5L 402 A 1 
HETATM 25 C C19 O5L . . . D 3 -27.191 35.416 16.326 1 111.77 ? C19 O5L 402 A 1 
HETATM 26 C C20 O5L . . . D 3 -27.003 34.692 17.506 1 119.44 ? C20 O5L 402 A 1 
HETATM 27 C C21 O5L . . . D 3 -27.714 33.532 17.743 1 121.39 ? C21 O5L 402 A 1 
HETATM 28 N N3 O5L . . . D 3 -26.49 36.57 16.097 1 105.22 ? N3 O5L 402 A 1 
HETATM 29 C C22 O5L . . . D 3 -28.165 30.211 14.596 1 158.77 ? C22 O5L 402 A 1 
HETATM 30 F F1 O5L . . . D 3 -27.582 31.333 14.18 1 162.59 ? F1 O5L 402 A 1 
HETATM 31 F F2 O5L . . . D 3 -29.476 30.434 14.53 1 170.52 ? F2 O5L 402 A 1 
HETATM 32 F F3 O5L . . . D 3 -27.911 29.306 13.655 1 166.84 ? F3 O5L 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#