data_8I2B # _model_server_result.job_id wBB9MXsz50zazvriY7J5ZQ _model_server_result.datetime_utc '2024-11-29 22:14:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 8I2B # _exptl.entry_id 8I2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8I2B _cell.length_a 91.318 _cell.length_b 91.318 _cell.length_c 143.674 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 133 A CYS 141 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A SG CYS 136 A CYS 144 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 A SG CYS 158 A CYS 166 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A SG CYS 169 A CYS 177 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc5 B SG CYS 133 B CYS 141 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc6 B SG CYS 136 B CYS 144 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc7 B SG CYS 158 B CYS 166 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc8 B SG CYS 169 B CYS 177 1_555 K ZN ZN . B ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8I2B _atom_sites.fract_transf_matrix[1][1] 0.010951 _atom_sites.fract_transf_matrix[1][2] 0.006322 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG4 A 1 401 401 PG4 PG4 . D 3 O5L A 1 402 501 O5L UNL . E 4 AR6 A 1 403 701 AR6 AR6 . F 5 ZN A 1 404 2 ZN ZN . G 2 PG4 B 1 601 601 PG4 PG4 . H 2 PG4 B 1 602 401 PG4 PG4 . I 3 O5L B 1 603 501 O5L UNL . J 4 AR6 B 1 604 601 AR6 AR6 . K 5 ZN B 1 605 1 ZN ZN . L 6 SO4 B 1 606 1 SO4 SO4 . M 6 SO4 B 1 607 2 SO4 SO4 . N 6 SO4 B 1 608 3 SO4 SO4 . O 6 SO4 B 1 609 4 SO4 SO4 . P 6 SO4 B 1 610 5 SO4 SO4 . Q 7 HOH A 1 501 35 HOH HOH . Q 7 HOH A 2 502 53 HOH HOH . Q 7 HOH A 3 503 16 HOH HOH . Q 7 HOH A 4 504 18 HOH HOH . Q 7 HOH A 5 505 55 HOH HOH . Q 7 HOH A 6 506 47 HOH HOH . Q 7 HOH A 7 507 26 HOH HOH . Q 7 HOH A 8 508 21 HOH HOH . Q 7 HOH A 9 509 32 HOH HOH . Q 7 HOH A 10 510 23 HOH HOH . Q 7 HOH A 11 511 36 HOH HOH . Q 7 HOH A 12 512 62 HOH HOH . Q 7 HOH A 13 513 25 HOH HOH . Q 7 HOH A 14 514 56 HOH HOH . Q 7 HOH A 15 515 39 HOH HOH . Q 7 HOH A 16 516 60 HOH HOH . Q 7 HOH A 17 517 17 HOH HOH . Q 7 HOH A 18 518 40 HOH HOH . Q 7 HOH A 19 519 50 HOH HOH . Q 7 HOH A 20 520 43 HOH HOH . Q 7 HOH A 21 521 58 HOH HOH . Q 7 HOH A 22 522 54 HOH HOH . Q 7 HOH A 23 523 22 HOH HOH . Q 7 HOH A 24 524 33 HOH HOH . Q 7 HOH A 25 525 24 HOH HOH . Q 7 HOH A 26 526 52 HOH HOH . Q 7 HOH A 27 527 19 HOH HOH . Q 7 HOH A 28 528 45 HOH HOH . Q 7 HOH A 29 529 46 HOH HOH . Q 7 HOH A 30 530 44 HOH HOH . Q 7 HOH A 31 531 20 HOH HOH . Q 7 HOH A 32 532 49 HOH HOH . Q 7 HOH A 33 533 59 HOH HOH . Q 7 HOH A 34 534 48 HOH HOH . Q 7 HOH A 35 535 37 HOH HOH . Q 7 HOH A 36 536 61 HOH HOH . Q 7 HOH A 37 537 57 HOH HOH . Q 7 HOH A 38 538 34 HOH HOH . Q 7 HOH A 39 539 51 HOH HOH . R 7 HOH B 1 701 74 HOH HOH . R 7 HOH B 2 702 77 HOH HOH . R 7 HOH B 3 703 6 HOH HOH . R 7 HOH B 4 704 71 HOH HOH . R 7 HOH B 5 705 70 HOH HOH . R 7 HOH B 6 706 13 HOH HOH . R 7 HOH B 7 707 63 HOH HOH . R 7 HOH B 8 708 8 HOH HOH . R 7 HOH B 9 709 2 HOH HOH . R 7 HOH B 10 710 76 HOH HOH . R 7 HOH B 11 711 11 HOH HOH . R 7 HOH B 12 712 4 HOH HOH . R 7 HOH B 13 713 38 HOH HOH . R 7 HOH B 14 714 69 HOH HOH . R 7 HOH B 15 715 3 HOH HOH . R 7 HOH B 16 716 5 HOH HOH . R 7 HOH B 17 717 42 HOH HOH . R 7 HOH B 18 718 41 HOH HOH . R 7 HOH B 19 719 68 HOH HOH . R 7 HOH B 20 720 10 HOH HOH . R 7 HOH B 21 721 12 HOH HOH . R 7 HOH B 22 722 9 HOH HOH . R 7 HOH B 23 723 14 HOH HOH . R 7 HOH B 24 724 27 HOH HOH . R 7 HOH B 25 725 67 HOH HOH . R 7 HOH B 26 726 30 HOH HOH . R 7 HOH B 27 727 65 HOH HOH . R 7 HOH B 28 728 7 HOH HOH . R 7 HOH B 29 729 28 HOH HOH . R 7 HOH B 30 730 15 HOH HOH . R 7 HOH B 31 731 66 HOH HOH . R 7 HOH B 32 732 78 HOH HOH . R 7 HOH B 33 733 75 HOH HOH . R 7 HOH B 34 734 73 HOH HOH . R 7 HOH B 35 735 64 HOH HOH . R 7 HOH B 36 736 72 HOH HOH . R 7 HOH B 37 737 79 HOH HOH . R 7 HOH B 38 738 80 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -3.791 _atom_site.Cartn_y 27.653 _atom_site.Cartn_z 1.429 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #