data_8I2G # _model_server_result.job_id K61NyJ73q3ZB0_TYryNO8Q _model_server_result.datetime_utc '2024-10-25 20:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 8I2G # _exptl.entry_id 8I2G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I2G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N ? 9 K N N ? 9 L N N ? 9 M N N ? 9 S N N ? 9 U N N ? 9 V N N ? 9 W N N ? 9 X N N ? 9 Y N N ? 9 Z N N ? 9 AA N N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 C 1 NAG X 103 NAG 8 n H NAG 2 C 2 NAG X 104 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 1 R CYS 18 1_555 E SG CYS 8 R CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 E SG CYS 6 R CYS 23 1_555 E SG CYS 15 R CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 258 R CYS 275 1_555 E SG CYS 329 R CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 259 R CYS 276 1_555 E SG CYS 339 R CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 E SG CYS 275 R CYS 292 1_555 E SG CYS 321 R CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 425 R CYS 442 1_555 E SG CYS 500 R CYS 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 F SG CYS 7 X CYS 7 1_555 F SG CYS 31 X CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 F SG CYS 10 X CYS 10 1_555 F SG CYS 60 X CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 28 X CYS 28 1_555 F SG CYS 82 X CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 F SG CYS 32 X CYS 32 1_555 F SG CYS 84 X CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 F SG CYS 59 X CYS 59 1_555 F SG CYS 87 X CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 G SG CYS 3 Y CYS 3 1_555 G SG CYS 51 Y CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 G SG CYS 17 Y CYS 17 1_555 G SG CYS 66 Y CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 G SG CYS 20 Y CYS 20 1_555 G SG CYS 104 Y CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 G SG CYS 28 Y CYS 28 1_555 G SG CYS 82 Y CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf18 G SG CYS 32 Y CYS 32 1_555 G SG CYS 84 Y CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf19 G SG CYS 87 Y CYS 87 1_555 G SG CYS 94 Y CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 E ND2 ASN 174 R ASN 191 1_555 T C1 NAG . R NAG 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 F ND2 ASN 52 X ASN 52 1_555 H C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 G ND2 ASN 7 Y ASN 7 1_555 DA C1 NAG . Y NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 H O4 NAG . C NAG 1 1_555 H C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8I2G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CLR R 1 701 702 CLR CLR . J 9 CLR R 1 702 704 CLR CLR . K 9 CLR R 1 703 705 CLR CLR . L 9 CLR R 1 704 706 CLR CLR . M 9 CLR R 1 705 707 CLR CLR . N 10 PLM R 1 706 708 PLM PLM . O 10 PLM R 1 707 709 PLM PLM . P 10 PLM R 1 708 710 PLM PLM . Q 11 MYR R 1 709 711 MYR MYR . R 11 MYR R 1 710 712 MYR MYR . S 9 CLR R 1 711 713 CLR CLR . T 12 NAG R 1 712 714 NAG NAG . U 9 CLR R 1 713 715 CLR CLR . V 9 CLR R 1 714 716 CLR CLR . W 9 CLR R 1 715 717 CLR CLR . X 9 CLR R 1 716 718 CLR CLR . Y 9 CLR R 1 717 719 CLR CLR . Z 9 CLR R 1 718 720 CLR CLR . AA 9 CLR R 1 719 721 CLR CLR . BA 13 O6F R 1 720 722 O6F LIG . CA 12 NAG X 1 101 102 NAG NAG . DA 12 NAG Y 1 201 201 NAG NAG . EA 12 NAG Y 1 202 202 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 9 134.839 122.377 153.061 1 65.5 ? C1 CLR 701 R 1 HETATM 2 C C2 CLR . . . I 9 134.973 122.593 154.563 1 65.54 ? C2 CLR 701 R 1 HETATM 3 C C3 CLR . . . I 9 136.415 122.435 154.996 1 65.27 ? C3 CLR 701 R 1 HETATM 4 C C4 CLR . . . I 9 137.28 123.436 154.237 1 65.12 ? C4 CLR 701 R 1 HETATM 5 C C5 CLR . . . I 9 137.133 123.289 152.746 1 65.07 ? C5 CLR 701 R 1 HETATM 6 C C6 CLR . . . I 9 138.212 123.254 151.966 1 65.5 ? C6 CLR 701 R 1 HETATM 7 C C7 CLR . . . I 9 138.191 123.192 150.476 1 65.25 ? C7 CLR 701 R 1 HETATM 8 C C8 CLR . . . I 9 136.809 123.442 149.883 1 65.22 ? C8 CLR 701 R 1 HETATM 9 C C9 CLR . . . I 9 135.732 122.758 150.736 1 65.27 ? C9 CLR 701 R 1 HETATM 10 C C10 CLR . . . I 9 135.719 123.302 152.19 1 65.16 ? C10 CLR 701 R 1 HETATM 11 C C11 CLR . . . I 9 134.36 122.77 150.046 1 65.67 ? C11 CLR 701 R 1 HETATM 12 C C12 CLR . . . I 9 134.374 122.339 148.574 1 65.42 ? C12 CLR 701 R 1 HETATM 13 C C13 CLR . . . I 9 135.407 123.111 147.75 1 65.9 ? C13 CLR 701 R 1 HETATM 14 C C14 CLR . . . I 9 136.75 122.902 148.466 1 65.55 ? C14 CLR 701 R 1 HETATM 15 C C15 CLR . . . I 9 137.81 123.369 147.479 1 65.38 ? C15 CLR 701 R 1 HETATM 16 C C16 CLR . . . I 9 137.221 122.986 146.11 1 64.87 ? C16 CLR 701 R 1 HETATM 17 C C17 CLR . . . I 9 135.75 122.542 146.345 1 65.16 ? C17 CLR 701 R 1 HETATM 18 C C18 CLR . . . I 9 135.029 124.593 147.652 1 65.85 ? C18 CLR 701 R 1 HETATM 19 C C19 CLR . . . I 9 135.192 124.743 152.271 1 65.25 ? C19 CLR 701 R 1 HETATM 20 C C20 CLR . . . I 9 134.857 122.887 145.144 1 65.33 ? C20 CLR 701 R 1 HETATM 21 C C21 CLR . . . I 9 133.382 122.619 145.423 1 65.22 ? C21 CLR 701 R 1 HETATM 22 C C22 CLR . . . I 9 135.329 122.121 143.897 1 65.65 ? C22 CLR 701 R 1 HETATM 23 C C23 CLR . . . I 9 134.527 122.361 142.622 1 65.64 ? C23 CLR 701 R 1 HETATM 24 C C24 CLR . . . I 9 135.424 122.483 141.396 1 65.67 ? C24 CLR 701 R 1 HETATM 25 C C25 CLR . . . I 9 136.182 123.807 141.284 1 66.6 ? C25 CLR 701 R 1 HETATM 26 C C26 CLR . . . I 9 137.63 123.553 140.876 1 65.73 ? C26 CLR 701 R 1 HETATM 27 C C27 CLR . . . I 9 135.517 124.766 140.301 1 65.42 ? C27 CLR 701 R 1 HETATM 28 O O1 CLR . . . I 9 136.494 122.619 156.394 1 64.95 ? O1 CLR 701 R 1 HETATM 29 H H11 CLR . . . I 9 133.911 122.511 152.811 1 65.22 ? H11 CLR 701 R 1 HETATM 30 H H12 CLR . . . I 9 135.044 121.451 152.861 1 65.19 ? H12 CLR 701 R 1 HETATM 31 H H21 CLR . . . I 9 134.412 121.955 155.031 1 65.23 ? H21 CLR 701 R 1 HETATM 32 H H22 CLR . . . I 9 134.656 123.476 154.811 1 65.22 ? H22 CLR 701 R 1 HETATM 33 H H3 CLR . . . I 9 136.708 121.542 154.757 1 65.1 ? H3 CLR 701 R 1 HETATM 34 H H41 CLR . . . I 9 138.212 123.329 154.484 1 65 ? H41 CLR 701 R 1 HETATM 35 H H42 CLR . . . I 9 137.021 124.329 154.516 1 65 ? H42 CLR 701 R 1 HETATM 36 H H6 CLR . . . I 9 139.049 123.339 152.364 1 64.98 ? H6 CLR 701 R 1 HETATM 37 H H71 CLR . . . I 9 138.821 123.84 150.124 1 64.92 ? H71 CLR 701 R 1 HETATM 38 H H72 CLR . . . I 9 138.528 122.33 150.186 1 65.04 ? H72 CLR 701 R 1 HETATM 39 H H8 CLR . . . I 9 136.651 124.399 149.873 1 64.96 ? H8 CLR 701 R 1 HETATM 40 H H9 CLR . . . I 9 136.002 121.828 150.801 1 65.09 ? H9 CLR 701 R 1 HETATM 41 H H111 CLR . . . I 9 133.966 123.654 150.1 1 65.13 ? H111 CLR 701 R 1 HETATM 42 H H112 CLR . . . I 9 133.751 122.188 150.527 1 65.14 ? H112 CLR 701 R 1 HETATM 43 H H121 CLR . . . I 9 133.497 122.486 148.188 1 65.03 ? H121 CLR 701 R 1 HETATM 44 H H122 CLR . . . I 9 134.527 121.381 148.541 1 65.11 ? H122 CLR 701 R 1 HETATM 45 H H14 CLR . . . I 9 136.853 121.941 148.547 1 65.13 ? H14 CLR 701 R 1 HETATM 46 H H151 CLR . . . I 9 137.988 124.32 147.551 1 64.8 ? H151 CLR 701 R 1 HETATM 47 H H152 CLR . . . I 9 138.653 122.918 147.641 1 64.99 ? H152 CLR 701 R 1 HETATM 48 H H161 CLR . . . I 9 137.266 123.729 145.488 1 64.72 ? H161 CLR 701 R 1 HETATM 49 H H162 CLR . . . I 9 137.722 122.262 145.703 1 64.89 ? H162 CLR 701 R 1 HETATM 50 H H17 CLR . . . I 9 135.735 121.577 146.437 1 65.07 ? H17 CLR 701 R 1 HETATM 51 H H181 CLR . . . I 9 134.799 124.981 148.51 1 64.95 ? H181 CLR 701 R 1 HETATM 52 H H182 CLR . . . I 9 134.275 124.746 147.063 1 64.93 ? H182 CLR 701 R 1 HETATM 53 H H183 CLR . . . I 9 135.768 125.112 147.304 1 64.94 ? H183 CLR 701 R 1 HETATM 54 H H191 CLR . . . I 9 135.804 125.321 152.753 1 64.95 ? H191 CLR 701 R 1 HETATM 55 H H192 CLR . . . I 9 134.341 124.784 152.734 1 65.07 ? H192 CLR 701 R 1 HETATM 56 H H193 CLR . . . I 9 135.074 125.134 151.391 1 64.99 ? H193 CLR 701 R 1 HETATM 57 H H20 CLR . . . I 9 134.961 123.834 144.959 1 64.93 ? H20 CLR 701 R 1 HETATM 58 H H211 CLR . . . I 9 133.271 121.828 145.974 1 65.07 ? H211 CLR 701 R 1 HETATM 59 H H212 CLR . . . I 9 132.866 122.485 144.614 1 65.03 ? H212 CLR 701 R 1 HETATM 60 H H213 CLR . . . I 9 132.972 123.363 145.89 1 64.95 ? H213 CLR 701 R 1 HETATM 61 H H221 CLR . . . I 9 135.332 121.173 144.098 1 65.18 ? H221 CLR 701 R 1 HETATM 62 H H222 CLR . . . I 9 136.251 122.351 143.705 1 64.97 ? H222 CLR 701 R 1 HETATM 63 H H231 CLR . . . I 9 134.005 123.173 142.717 1 64.99 ? H231 CLR 701 R 1 HETATM 64 H H232 CLR . . . I 9 133.886 121.645 142.487 1 65.13 ? H232 CLR 701 R 1 HETATM 65 H H241 CLR . . . I 9 134.892 122.357 140.594 1 64.99 ? H241 CLR 701 R 1 HETATM 66 H H242 CLR . . . I 9 136.066 121.756 141.405 1 65.14 ? H242 CLR 701 R 1 HETATM 67 H H25 CLR . . . I 9 136.184 124.224 142.159 1 65.05 ? H25 CLR 701 R 1 HETATM 68 H H261 CLR . . . I 9 138.129 124.381 140.802 1 64.52 ? H261 CLR 701 R 1 HETATM 69 H H262 CLR . . . I 9 137.685 123.098 140.021 1 64.83 ? H262 CLR 701 R 1 HETATM 70 H H263 CLR . . . I 9 138.078 122.998 141.533 1 64.96 ? H263 CLR 701 R 1 HETATM 71 H H271 CLR . . . I 9 135.583 124.427 139.395 1 64.63 ? H271 CLR 701 R 1 HETATM 72 H H272 CLR . . . I 9 135.922 125.647 140.316 1 64.7 ? H272 CLR 701 R 1 HETATM 73 H H273 CLR . . . I 9 134.575 124.878 140.504 1 64.75 ? H273 CLR 701 R 1 HETATM 74 H H1 CLR . . . I 9 137.229 122.286 156.663 1 65.1 ? H1 CLR 701 R 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 74 #