data_8I2G # _model_server_result.job_id 2b3y5nZw-mFDIwo46DDAeg _model_server_result.datetime_utc '2024-11-21 22:59:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":710}' # _entry.id 8I2G # _exptl.entry_id 8I2G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 228.371 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I2G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 Q N N ? 11 R N N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 C 1 NAG X 103 NAG 8 n H NAG 2 C 2 NAG X 104 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 1 R CYS 18 1_555 E SG CYS 8 R CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 E SG CYS 6 R CYS 23 1_555 E SG CYS 15 R CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 258 R CYS 275 1_555 E SG CYS 329 R CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 259 R CYS 276 1_555 E SG CYS 339 R CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 E SG CYS 275 R CYS 292 1_555 E SG CYS 321 R CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 425 R CYS 442 1_555 E SG CYS 500 R CYS 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 F SG CYS 7 X CYS 7 1_555 F SG CYS 31 X CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 F SG CYS 10 X CYS 10 1_555 F SG CYS 60 X CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 28 X CYS 28 1_555 F SG CYS 82 X CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 F SG CYS 32 X CYS 32 1_555 F SG CYS 84 X CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 F SG CYS 59 X CYS 59 1_555 F SG CYS 87 X CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 G SG CYS 3 Y CYS 3 1_555 G SG CYS 51 Y CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 G SG CYS 17 Y CYS 17 1_555 G SG CYS 66 Y CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 G SG CYS 20 Y CYS 20 1_555 G SG CYS 104 Y CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 G SG CYS 28 Y CYS 28 1_555 G SG CYS 82 Y CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf18 G SG CYS 32 Y CYS 32 1_555 G SG CYS 84 Y CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf19 G SG CYS 87 Y CYS 87 1_555 G SG CYS 94 Y CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 E ND2 ASN 174 R ASN 191 1_555 T C1 NAG . R NAG 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 F ND2 ASN 52 X ASN 52 1_555 H C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 G ND2 ASN 7 Y ASN 7 1_555 DA C1 NAG . Y NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 H O4 NAG . C NAG 1 1_555 H C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 312 n n C1 O2 MYR sing 313 n n C1 C2 MYR sing 314 n n O2 HO2 MYR sing 315 n n C2 C3 MYR sing 316 n n C2 H21 MYR sing 317 n n C2 H22 MYR sing 318 n n C3 C4 MYR sing 319 n n C3 H31 MYR sing 320 n n C3 H32 MYR sing 321 n n C4 C5 MYR sing 322 n n C4 H41 MYR sing 323 n n C4 H42 MYR sing 324 n n C5 C6 MYR sing 325 n n C5 H51 MYR sing 326 n n C5 H52 MYR sing 327 n n C6 C7 MYR sing 328 n n C6 H61 MYR sing 329 n n C6 H62 MYR sing 330 n n C7 C8 MYR sing 331 n n C7 H71 MYR sing 332 n n C7 H72 MYR sing 333 n n C8 C9 MYR sing 334 n n C8 H81 MYR sing 335 n n C8 H82 MYR sing 336 n n C9 C10 MYR sing 337 n n C9 H91 MYR sing 338 n n C9 H92 MYR sing 339 n n C10 C11 MYR sing 340 n n C10 H101 MYR sing 341 n n C10 H102 MYR sing 342 n n C11 C12 MYR sing 343 n n C11 H111 MYR sing 344 n n C11 H112 MYR sing 345 n n C12 C13 MYR sing 346 n n C12 H121 MYR sing 347 n n C12 H122 MYR sing 348 n n C13 C14 MYR sing 349 n n C13 H131 MYR sing 350 n n C13 H132 MYR sing 351 n n C14 H141 MYR sing 352 n n C14 H142 MYR sing 353 n n C14 H143 MYR sing 354 n n # _atom_sites.entry_id 8I2G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CLR R 1 701 702 CLR CLR . J 9 CLR R 1 702 704 CLR CLR . K 9 CLR R 1 703 705 CLR CLR . L 9 CLR R 1 704 706 CLR CLR . M 9 CLR R 1 705 707 CLR CLR . N 10 PLM R 1 706 708 PLM PLM . O 10 PLM R 1 707 709 PLM PLM . P 10 PLM R 1 708 710 PLM PLM . Q 11 MYR R 1 709 711 MYR MYR . R 11 MYR R 1 710 712 MYR MYR . S 9 CLR R 1 711 713 CLR CLR . T 12 NAG R 1 712 714 NAG NAG . U 9 CLR R 1 713 715 CLR CLR . V 9 CLR R 1 714 716 CLR CLR . W 9 CLR R 1 715 717 CLR CLR . X 9 CLR R 1 716 718 CLR CLR . Y 9 CLR R 1 717 719 CLR CLR . Z 9 CLR R 1 718 720 CLR CLR . AA 9 CLR R 1 719 721 CLR CLR . BA 13 O6F R 1 720 722 O6F LIG . CA 12 NAG X 1 101 102 NAG NAG . DA 12 NAG Y 1 201 201 NAG NAG . EA 12 NAG Y 1 202 202 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . R 11 151.137 154.325 122.527 1 55.93 ? C1 MYR 710 R 1 HETATM 2 O O1 MYR . . . R 11 150.847 155.052 121.554 1 55.56 ? O1 MYR 710 R 1 HETATM 3 O O2 MYR . . . R 11 152.329 153.987 122.697 1 55.93 ? O2 MYR 710 R 1 HETATM 4 C C2 MYR . . . R 11 150.065 153.859 123.483 1 55.2 ? C2 MYR 710 R 1 HETATM 5 C C3 MYR . . . R 11 150.032 152.336 123.508 1 54.79 ? C3 MYR 710 R 1 HETATM 6 C C4 MYR . . . R 11 148.877 151.817 124.356 1 54.84 ? C4 MYR 710 R 1 HETATM 7 C C5 MYR . . . R 11 149.144 152.032 125.841 1 54.99 ? C5 MYR 710 R 1 HETATM 8 C C6 MYR . . . R 11 148.081 152.927 126.466 1 55.03 ? C6 MYR 710 R 1 HETATM 9 C C7 MYR . . . R 11 148.461 153.309 127.892 1 54.6 ? C7 MYR 710 R 1 HETATM 10 C C8 MYR . . . R 11 147.349 154.115 128.552 1 54.51 ? C8 MYR 710 R 1 HETATM 11 C C9 MYR . . . R 11 146.327 153.204 129.22 1 54.54 ? C9 MYR 710 R 1 HETATM 12 C C10 MYR . . . R 11 145.005 153.936 129.419 1 54.74 ? C10 MYR 710 R 1 HETATM 13 C C11 MYR . . . R 11 144.087 153.19 130.38 1 55.41 ? C11 MYR 710 R 1 HETATM 14 C C12 MYR . . . R 11 142.658 153.705 130.25 1 55.28 ? C12 MYR 710 R 1 HETATM 15 C C13 MYR . . . R 11 141.816 153.375 131.477 1 55.5 ? C13 MYR 710 R 1 HETATM 16 C C14 MYR . . . R 11 142.106 154.34 132.621 1 54.8 ? C14 MYR 710 R 1 HETATM 17 H H21 MYR . . . R 11 149.096 154.244 123.166 1 54.4 ? H21 MYR 710 R 1 HETATM 18 H H22 MYR . . . R 11 150.273 154.24 124.483 1 54.36 ? H22 MYR 710 R 1 HETATM 19 H H31 MYR . . . R 11 150.973 151.966 123.916 1 54.28 ? H31 MYR 710 R 1 HETATM 20 H H32 MYR . . . R 11 149.936 151.956 122.491 1 54.24 ? H32 MYR 710 R 1 HETATM 21 H H41 MYR . . . R 11 148.733 150.754 124.163 1 54.25 ? H41 MYR 710 R 1 HETATM 22 H H42 MYR . . . R 11 147.96 152.334 124.074 1 54.27 ? H42 MYR 710 R 1 HETATM 23 H H51 MYR . . . R 11 150.125 152.485 125.975 1 54.36 ? H51 MYR 710 R 1 HETATM 24 H H52 MYR . . . R 11 149.149 151.068 126.35 1 54.32 ? H52 MYR 710 R 1 HETATM 25 H H61 MYR . . . R 11 147.123 152.406 126.471 1 54.28 ? H61 MYR 710 R 1 HETATM 26 H H62 MYR . . . R 11 147.968 153.83 125.866 1 54.41 ? H62 MYR 710 R 1 HETATM 27 H H71 MYR . . . R 11 149.378 153.898 127.878 1 54.34 ? H71 MYR 710 R 1 HETATM 28 H H72 MYR . . . R 11 148.65 152.407 128.472 1 54.22 ? H72 MYR 710 R 1 HETATM 29 H H81 MYR . . . R 11 146.852 154.729 127.802 1 54.38 ? H81 MYR 710 R 1 HETATM 30 H H82 MYR . . . R 11 147.781 154.784 129.298 1 54.29 ? H82 MYR 710 R 1 HETATM 31 H H91 MYR . . . R 11 146.709 152.872 130.186 1 54.32 ? H91 MYR 710 R 1 HETATM 32 H H92 MYR . . . R 11 146.165 152.321 128.602 1 54.29 ? H92 MYR 710 R 1 HETATM 33 H H101 MYR . . . R 11 144.506 154.047 128.457 1 54.26 ? H101 MYR 710 R 1 HETATM 34 H H102 MYR . . . R 11 145.202 154.935 129.809 1 54.34 ? H102 MYR 710 R 1 HETATM 35 H H111 MYR . . . R 11 144.438 153.328 131.403 1 54.28 ? H111 MYR 710 R 1 HETATM 36 H H112 MYR . . . R 11 144.114 152.124 130.157 1 54.23 ? H112 MYR 710 R 1 HETATM 37 H H121 MYR . . . R 11 142.196 153.26 129.368 1 54.39 ? H121 MYR 710 R 1 HETATM 38 H H122 MYR . . . R 11 142.677 154.785 130.106 1 54.3 ? H122 MYR 710 R 1 HETATM 39 H H131 MYR . . . R 11 142.03 152.356 131.801 1 54.18 ? H131 MYR 710 R 1 HETATM 40 H H132 MYR . . . R 11 140.759 153.428 131.217 1 54.29 ? H132 MYR 710 R 1 HETATM 41 H H141 MYR . . . R 11 143.096 154.778 132.489 1 54.3 ? H141 MYR 710 R 1 HETATM 42 H H142 MYR . . . R 11 142.062 153.806 133.571 1 54.29 ? H142 MYR 710 R 1 HETATM 43 H H143 MYR . . . R 11 141.361 155.135 132.617 1 54.35 ? H143 MYR 710 R 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #