data_8I2G # _model_server_result.job_id zSyPsY37inNIAotUsc4WCA _model_server_result.datetime_utc '2024-11-21 22:33:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":712}' # _entry.id 8I2G # _exptl.entry_id 8I2G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I2G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 T N N ? 12 CA N N ? 12 DA N N ? 12 EA N N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 C 1 NAG X 103 NAG 8 n H NAG 2 C 2 NAG X 104 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 1 R CYS 18 1_555 E SG CYS 8 R CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 E SG CYS 6 R CYS 23 1_555 E SG CYS 15 R CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 258 R CYS 275 1_555 E SG CYS 329 R CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 259 R CYS 276 1_555 E SG CYS 339 R CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 E SG CYS 275 R CYS 292 1_555 E SG CYS 321 R CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 425 R CYS 442 1_555 E SG CYS 500 R CYS 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 F SG CYS 7 X CYS 7 1_555 F SG CYS 31 X CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 F SG CYS 10 X CYS 10 1_555 F SG CYS 60 X CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 F SG CYS 28 X CYS 28 1_555 F SG CYS 82 X CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 F SG CYS 32 X CYS 32 1_555 F SG CYS 84 X CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 F SG CYS 59 X CYS 59 1_555 F SG CYS 87 X CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 G SG CYS 3 Y CYS 3 1_555 G SG CYS 51 Y CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 G SG CYS 17 Y CYS 17 1_555 G SG CYS 66 Y CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 G SG CYS 20 Y CYS 20 1_555 G SG CYS 104 Y CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 G SG CYS 28 Y CYS 28 1_555 G SG CYS 82 Y CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf18 G SG CYS 32 Y CYS 32 1_555 G SG CYS 84 Y CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf19 G SG CYS 87 Y CYS 87 1_555 G SG CYS 94 Y CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 E ND2 ASN 174 R ASN 191 1_555 T C1 NAG . R NAG 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 F ND2 ASN 52 X ASN 52 1_555 H C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 G ND2 ASN 7 Y ASN 7 1_555 DA C1 NAG . Y NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 H O4 NAG . C NAG 1 1_555 H C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 355 n n C1 O1 NAG sing 356 n n C1 O5 NAG sing 357 n n C1 H1 NAG sing 358 n n C2 C3 NAG sing 359 n n C2 N2 NAG sing 360 n n C2 H2 NAG sing 361 n n C3 C4 NAG sing 362 n n C3 O3 NAG sing 363 n n C3 H3 NAG sing 364 n n C4 C5 NAG sing 365 n n C4 O4 NAG sing 366 n n C4 H4 NAG sing 367 n n C5 C6 NAG sing 368 n n C5 O5 NAG sing 369 n n C5 H5 NAG sing 370 n n C6 O6 NAG sing 371 n n C6 H61 NAG sing 372 n n C6 H62 NAG sing 373 n n C7 C8 NAG sing 374 n n C7 N2 NAG sing 375 n n C7 O7 NAG doub 376 n n C8 H81 NAG sing 377 n n C8 H82 NAG sing 378 n n C8 H83 NAG sing 379 n n N2 HN2 NAG sing 380 n n O1 HO1 NAG sing 381 n n O3 HO3 NAG sing 382 n n O4 HO4 NAG sing 383 n n O6 HO6 NAG sing 384 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8I2G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CLR R 1 701 702 CLR CLR . J 9 CLR R 1 702 704 CLR CLR . K 9 CLR R 1 703 705 CLR CLR . L 9 CLR R 1 704 706 CLR CLR . M 9 CLR R 1 705 707 CLR CLR . N 10 PLM R 1 706 708 PLM PLM . O 10 PLM R 1 707 709 PLM PLM . P 10 PLM R 1 708 710 PLM PLM . Q 11 MYR R 1 709 711 MYR MYR . R 11 MYR R 1 710 712 MYR MYR . S 9 CLR R 1 711 713 CLR CLR . T 12 NAG R 1 712 714 NAG NAG . U 9 CLR R 1 713 715 CLR CLR . V 9 CLR R 1 714 716 CLR CLR . W 9 CLR R 1 715 717 CLR CLR . X 9 CLR R 1 716 718 CLR CLR . Y 9 CLR R 1 717 719 CLR CLR . Z 9 CLR R 1 718 720 CLR CLR . AA 9 CLR R 1 719 721 CLR CLR . BA 13 O6F R 1 720 722 O6F LIG . CA 12 NAG X 1 101 102 NAG NAG . DA 12 NAG Y 1 201 201 NAG NAG . EA 12 NAG Y 1 202 202 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . T 12 105.582 117.321 188.148 1 127.14 ? C1 NAG 712 R 1 HETATM 2 C C2 NAG . . . T 12 105.451 115.946 188.8 1 126 ? C2 NAG 712 R 1 HETATM 3 C C3 NAG . . . T 12 103.983 115.537 188.876 1 125.27 ? C3 NAG 712 R 1 HETATM 4 C C4 NAG . . . T 12 103.166 116.62 189.568 1 124.94 ? C4 NAG 712 R 1 HETATM 5 C C5 NAG . . . T 12 103.395 117.969 188.893 1 125.44 ? C5 NAG 712 R 1 HETATM 6 C C6 NAG . . . T 12 102.711 119.111 189.608 1 125.25 ? C6 NAG 712 R 1 HETATM 7 C C7 NAG . . . T 12 106.889 113.96 188.682 1 125.54 ? C7 NAG 712 R 1 HETATM 8 C C8 NAG . . . T 12 107.633 113.021 187.781 1 125.51 ? C8 NAG 712 R 1 HETATM 9 N N2 NAG . . . T 12 106.223 114.949 188.077 1 125.95 ? N2 NAG 712 R 1 HETATM 10 O O3 NAG . . . T 12 103.869 114.311 189.589 1 124.88 ? O3 NAG 712 R 1 HETATM 11 O O4 NAG . . . T 12 101.782 116.295 189.508 1 124.65 ? O4 NAG 712 R 1 HETATM 12 O O5 NAG . . . T 12 104.797 118.274 188.872 1 126.93 ? O5 NAG 712 R 1 HETATM 13 O O6 NAG . . . T 12 102.934 120.348 188.945 1 125.6 ? O6 NAG 712 R 1 HETATM 14 O O7 NAG . . . T 12 106.891 113.829 189.902 1 125.49 ? O7 NAG 712 R 1 HETATM 15 H H1 NAG . . . T 12 105.262 117.272 187.227 1 126.26 ? H1 NAG 712 R 1 HETATM 16 H H2 NAG . . . T 12 105.795 116.007 189.712 1 125.73 ? H2 NAG 712 R 1 HETATM 17 H H3 NAG . . . T 12 103.642 115.411 187.97 1 124.89 ? H3 NAG 712 R 1 HETATM 18 H H4 NAG . . . T 12 103.44 116.679 190.503 1 124.82 ? H4 NAG 712 R 1 HETATM 19 H H5 NAG . . . T 12 103.065 117.925 187.975 1 125.15 ? H5 NAG 712 R 1 HETATM 20 H H61 NAG . . . T 12 101.751 118.937 189.643 1 124.71 ? H61 NAG 712 R 1 HETATM 21 H H62 NAG . . . T 12 103.058 119.17 190.518 1 125.11 ? H62 NAG 712 R 1 HETATM 22 H H81 NAG . . . T 12 107.643 113.379 186.873 1 125.29 ? H81 NAG 712 R 1 HETATM 23 H H82 NAG . . . T 12 108.55 112.922 188.1 1 125.66 ? H82 NAG 712 R 1 HETATM 24 H H83 NAG . . . T 12 107.192 112.15 187.783 1 125.01 ? H83 NAG 712 R 1 HETATM 25 H HN2 NAG . . . T 12 106.255 115.001 187.167 1 125.55 ? HN2 NAG 712 R 1 HETATM 26 H HO3 NAG . . . T 12 103.013 114.145 189.757 1 124.72 ? HO3 NAG 712 R 1 HETATM 27 H HO4 NAG . . . T 12 101.329 116.822 190.062 1 124.7 ? HO4 NAG 712 R 1 HETATM 28 H HO6 NAG . . . T 12 102.558 121.005 189.409 1 125.23 ? HO6 NAG 712 R 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #