data_8I2N
#
_model_server_result.job_id            WUlTD-DRwSFrQbeRTeuvXw 
_model_server_result.datetime_utc      '2025-07-31 02:34:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i2n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    8I2N 
#
_exptl.entry_id    8I2N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              478.545 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-methyl-1-[4-[[[1-methyl-5-(phenylmethyl)pyrazol-3-yl]carbonylamino]methyl]phenyl]benzimidazole-5-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I2N 
_cell.length_a            46.51 
_cell.length_b            98.742 
_cell.length_c            128.129 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I2N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C28 H26 N6 O2' 
_chem_comp.formula_weight    478.545 
_chem_comp.id                O4U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-methyl-1-[4-[[[1-methyl-5-(phenylmethyl)pyrazol-3-yl]carbonylamino]methyl]phenyl]benzimidazole-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 N18 O4U sing 237 n n 
N18 C1 O4U sing 238 n n 
C1 O19 O4U doub 239 n n 
C1 C2 O4U sing 240 n n 
C2 C3 O4U doub 241 n y 
C2 C7 O4U sing 242 n y 
C3 C4 O4U sing 243 n y 
C7 C6 O4U doub 244 n y 
C4 C5 O4U doub 245 n y 
C6 C5 O4U sing 246 n y 
C6 N14 O4U sing 247 n y 
C5 N16 O4U sing 248 n y 
C32 C31 O4U doub 249 n y 
C32 C27 O4U sing 250 n y 
N14 C17 O4U doub 251 n y 
N16 C27 O4U sing 252 n n 
N16 C17 O4U sing 253 n y 
C31 C30 O4U sing 254 n y 
C27 C28 O4U doub 255 n y 
C30 C29 O4U doub 256 n y 
C30 C33 O4U sing 257 n n 
C28 C29 O4U sing 258 n y 
C33 N34 O4U sing 259 n n 
O36 C35 O4U doub 260 n n 
N34 C35 O4U sing 261 n n 
C35 C37 O4U sing 262 n n 
C37 C41 O4U sing 263 n y 
C37 N38 O4U doub 264 n y 
C41 C40 O4U doub 265 n y 
N38 N39 O4U sing 266 n y 
C47 C46 O4U doub 267 n y 
C47 C48 O4U sing 268 n y 
C46 C45 O4U sing 269 n y 
C48 C43 O4U doub 270 n y 
C40 N39 O4U sing 271 n y 
C40 C42 O4U sing 272 n n 
N39 C49 O4U sing 273 n n 
C45 C44 O4U doub 274 n y 
C43 C44 O4U sing 275 n y 
C43 C42 O4U sing 276 n n 
C7 H1 O4U sing 277 n n 
C4 H2 O4U sing 278 n n 
C3 H3 O4U sing 279 n n 
C17 H4 O4U sing 280 n n 
C20 H5 O4U sing 281 n n 
C20 H6 O4U sing 282 n n 
C20 H7 O4U sing 283 n n 
C28 H8 O4U sing 284 n n 
C29 H9 O4U sing 285 n n 
C31 H10 O4U sing 286 n n 
C32 H11 O4U sing 287 n n 
C33 H12 O4U sing 288 n n 
C33 H13 O4U sing 289 n n 
C41 H14 O4U sing 290 n n 
C42 H15 O4U sing 291 n n 
C42 H16 O4U sing 292 n n 
C44 H17 O4U sing 293 n n 
C45 H18 O4U sing 294 n n 
C46 H19 O4U sing 295 n n 
C47 H20 O4U sing 296 n n 
C48 H21 O4U sing 297 n n 
C49 H22 O4U sing 298 n n 
C49 H23 O4U sing 299 n n 
C49 H24 O4U sing 300 n n 
N18 H25 O4U sing 301 n n 
N34 H26 O4U sing 302 n n 
#
_atom_sites.entry_id                     8I2N 
_atom_sites.fract_transf_matrix[1][1]    0.021501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007805 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 O4U A 1 301 301 O4U QY7 . 
D 2 O4U B 1 301 301 O4U QY7 . 
E 3 HOH A 1 401 52 HOH HOH . 
E 3 HOH A 2 402 54 HOH HOH . 
E 3 HOH A 3 403 26 HOH HOH . 
E 3 HOH A 4 404 38 HOH HOH . 
E 3 HOH A 5 405 7 HOH HOH . 
E 3 HOH A 6 406 2 HOH HOH . 
E 3 HOH A 7 407 64 HOH HOH . 
E 3 HOH A 8 408 29 HOH HOH . 
E 3 HOH A 9 409 34 HOH HOH . 
E 3 HOH A 10 410 3 HOH HOH . 
E 3 HOH A 11 411 13 HOH HOH . 
E 3 HOH A 12 412 37 HOH HOH . 
E 3 HOH A 13 413 41 HOH HOH . 
E 3 HOH A 14 414 35 HOH HOH . 
E 3 HOH A 15 415 12 HOH HOH . 
E 3 HOH A 16 416 10 HOH HOH . 
E 3 HOH A 17 417 6 HOH HOH . 
E 3 HOH A 18 418 59 HOH HOH . 
E 3 HOH A 19 419 19 HOH HOH . 
E 3 HOH A 20 420 67 HOH HOH . 
E 3 HOH A 21 421 23 HOH HOH . 
E 3 HOH A 22 422 30 HOH HOH . 
E 3 HOH A 23 423 43 HOH HOH . 
E 3 HOH A 24 424 39 HOH HOH . 
E 3 HOH A 25 425 50 HOH HOH . 
E 3 HOH A 26 426 36 HOH HOH . 
E 3 HOH A 27 427 27 HOH HOH . 
E 3 HOH A 28 428 66 HOH HOH . 
E 3 HOH A 29 429 63 HOH HOH . 
E 3 HOH A 30 430 8 HOH HOH . 
E 3 HOH A 31 431 32 HOH HOH . 
F 3 HOH B 1 401 70 HOH HOH . 
F 3 HOH B 2 402 24 HOH HOH . 
F 3 HOH B 3 403 47 HOH HOH . 
F 3 HOH B 4 404 22 HOH HOH . 
F 3 HOH B 5 405 14 HOH HOH . 
F 3 HOH B 6 406 25 HOH HOH . 
F 3 HOH B 7 407 33 HOH HOH . 
F 3 HOH B 8 408 40 HOH HOH . 
F 3 HOH B 9 409 55 HOH HOH . 
F 3 HOH B 10 410 53 HOH HOH . 
F 3 HOH B 11 411 17 HOH HOH . 
F 3 HOH B 12 412 11 HOH HOH . 
F 3 HOH B 13 413 9 HOH HOH . 
F 3 HOH B 14 414 31 HOH HOH . 
F 3 HOH B 15 415 15 HOH HOH . 
F 3 HOH B 16 416 28 HOH HOH . 
F 3 HOH B 17 417 46 HOH HOH . 
F 3 HOH B 18 418 21 HOH HOH . 
F 3 HOH B 19 419 16 HOH HOH . 
F 3 HOH B 20 420 51 HOH HOH . 
F 3 HOH B 21 421 72 HOH HOH . 
F 3 HOH B 22 422 18 HOH HOH . 
F 3 HOH B 23 423 1 HOH HOH . 
F 3 HOH B 24 424 48 HOH HOH . 
F 3 HOH B 25 425 42 HOH HOH . 
F 3 HOH B 26 426 62 HOH HOH . 
F 3 HOH B 27 427 49 HOH HOH . 
F 3 HOH B 28 428 65 HOH HOH . 
F 3 HOH B 29 429 44 HOH HOH . 
F 3 HOH B 30 430 56 HOH HOH . 
F 3 HOH B 31 431 20 HOH HOH . 
F 3 HOH B 32 432 69 HOH HOH . 
F 3 HOH B 33 433 61 HOH HOH . 
F 3 HOH B 34 434 71 HOH HOH . 
F 3 HOH B 35 435 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 O4U . . . D 2 30.678 -6.909 52.984 1 49.71 ? C7 O4U 301 B 1 
HETATM 2 C C6 O4U . . . D 2 29.301 -6.98 52.872 1 42.79 ? C6 O4U 301 B 1 
HETATM 3 C C1 O4U . . . D 2 32.737 -6.431 54.31 1 54.39 ? C1 O4U 301 B 1 
HETATM 4 C C5 O4U . . . D 2 28.504 -6.645 53.95 1 44.98 ? C5 O4U 301 B 1 
HETATM 5 C C4 O4U . . . D 2 29.063 -6.232 55.147 1 55.52 ? C4 O4U 301 B 1 
HETATM 6 C C3 O4U . . . D 2 30.443 -6.161 55.261 1 63.1 ? C3 O4U 301 B 1 
HETATM 7 C C2 O4U . . . D 2 31.247 -6.498 54.18 1 57.6 ? C2 O4U 301 B 1 
HETATM 8 C C17 O4U . . . D 2 27.208 -7.241 52.244 1 55.61 ? C17 O4U 301 B 1 
HETATM 9 C C20 O4U . . . D 2 34.636 -6.507 55.811 1 54.88 ? C20 O4U 301 B 1 
HETATM 10 C C27 O4U . . . D 2 26.174 -6.615 54.209 1 49.74 ? C27 O4U 301 B 1 
HETATM 11 C C28 O4U . . . D 2 26.048 -6.961 55.551 1 43.88 ? C28 O4U 301 B 1 
HETATM 12 C C29 O4U . . . D 2 24.893 -6.736 56.286 1 42.28 ? C29 O4U 301 B 1 
HETATM 13 C C30 O4U . . . D 2 23.8 -6.148 55.683 1 57.54 ? C30 O4U 301 B 1 
HETATM 14 C C31 O4U . . . D 2 23.885 -5.793 54.35 1 54.28 ? C31 O4U 301 B 1 
HETATM 15 C C32 O4U . . . D 2 25.052 -6.024 53.645 1 65.13 ? C32 O4U 301 B 1 
HETATM 16 C C33 O4U . . . D 2 22.535 -5.894 56.461 1 60.12 ? C33 O4U 301 B 1 
HETATM 17 C C35 O4U . . . D 2 21.239 -4.329 55.167 1 53.95 ? C35 O4U 301 B 1 
HETATM 18 C C37 O4U . . . D 2 20.129 -4.069 54.222 1 52.67 ? C37 O4U 301 B 1 
HETATM 19 C C40 O4U . . . D 2 18.576 -3.038 52.982 1 66.58 ? C40 O4U 301 B 1 
HETATM 20 C C41 O4U . . . D 2 19.579 -2.833 53.914 1 49.56 ? C41 O4U 301 B 1 
HETATM 21 C C42 O4U . . . D 2 17.678 -2.019 52.334 1 70.38 ? C42 O4U 301 B 1 
HETATM 22 C C43 O4U . . . D 2 17.971 -0.634 52.842 1 80.33 ? C43 O4U 301 B 1 
HETATM 23 C C44 O4U . . . D 2 17.069 -0.012 53.689 1 92.66 ? C44 O4U 301 B 1 
HETATM 24 C C45 O4U . . . D 2 17.332 1.263 54.159 1 98.57 ? C45 O4U 301 B 1 
HETATM 25 C C46 O4U . . . D 2 18.495 1.912 53.779 1 97.36 ? C46 O4U 301 B 1 
HETATM 26 C C47 O4U . . . D 2 19.396 1.287 52.929 1 91.31 ? C47 O4U 301 B 1 
HETATM 27 C C48 O4U . . . D 2 19.134 0.013 52.459 1 88.63 ? C48 O4U 301 B 1 
HETATM 28 C C49 O4U . . . D 2 17.702 -5.197 51.893 1 63.64 ? C49 O4U 301 B 1 
HETATM 29 N N14 O4U . . . D 2 28.494 -7.338 51.849 1 50.63 ? N14 O4U 301 B 1 
HETATM 30 N N16 O4U . . . D 2 27.277 -6.822 53.495 1 53.48 ? N16 O4U 301 B 1 
HETATM 31 N N18 O4U . . . D 2 33.258 -6.178 55.504 1 54.11 ? N18 O4U 301 B 1 
HETATM 32 N N34 O4U . . . D 2 21.472 -5.578 55.538 1 49.36 ? N34 O4U 301 B 1 
HETATM 33 N N38 O4U . . . D 2 19.489 -5.015 53.515 1 64.56 ? N38 O4U 301 B 1 
HETATM 34 N N39 O4U . . . D 2 18.539 -4.341 52.763 1 64.73 ? N39 O4U 301 B 1 
HETATM 35 O O19 O4U . . . D 2 33.438 -6.621 53.337 1 41.15 ? O19 O4U 301 B 1 
HETATM 36 O O36 O4U . . . D 2 21.931 -3.408 55.547 1 57.45 ? O36 O4U 301 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           400 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#