data_8I2Z # _model_server_result.job_id asUPWgXApcx1klpDqJd3vA _model_server_result.datetime_utc '2024-11-14 23:38:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8I2Z # _exptl.entry_id 8I2Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I2Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 'complete point assembly' 1 ? monomeric 1 'point asymmetric unit' 2 ? monomeric 1 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 (1-5) A,B,C,D 2 1 A,B,C,D 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.510235 -0.860035 0 0.860035 -0.510235 0 0 0 1 204.71833 -52.26013 -147.7884 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 245.32069 -38.85498 0 3 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 358.08224 182.45202 0 4 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 182.45201 358.08224 0 5 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 -38.85498 245.32069 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.352 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 363 n n C1 C6 RET sing 364 n n C1 C16 RET sing 365 n n C1 C17 RET sing 366 n n C2 C3 RET sing 367 n n C2 H21 RET sing 368 n n C2 H22 RET sing 369 n n C3 C4 RET sing 370 n n C3 H31 RET sing 371 n n C3 H32 RET sing 372 n n C4 C5 RET sing 373 n n C4 H41 RET sing 374 n n C4 H42 RET sing 375 n n C5 C6 RET doub 376 n n C5 C18 RET sing 377 n n C6 C7 RET sing 378 n n C7 C8 RET doub 379 e n C7 H7 RET sing 380 n n C8 C9 RET sing 381 n n C8 H8 RET sing 382 n n C9 C10 RET doub 383 e n C9 C19 RET sing 384 n n C10 C11 RET sing 385 n n C10 H10 RET sing 386 n n C11 C12 RET doub 387 e n C11 H11 RET sing 388 n n C12 C13 RET sing 389 n n C12 H12 RET sing 390 n n C13 C14 RET doub 391 e n C13 C20 RET sing 392 n n C14 C15 RET sing 393 n n C14 H14 RET sing 394 n n C15 O1 RET doub 395 n n C15 H15 RET sing 396 n n C16 H161 RET sing 397 n n C16 H162 RET sing 398 n n C16 H163 RET sing 399 n n C17 H171 RET sing 400 n n C17 H172 RET sing 401 n n C17 H173 RET sing 402 n n C18 H181 RET sing 403 n n C18 H182 RET sing 404 n n C18 H183 RET sing 405 n n C19 H191 RET sing 406 n n C19 H192 RET sing 407 n n C19 H193 RET sing 408 n n C20 H201 RET sing 409 n n C20 H202 RET sing 410 n n C20 H203 RET sing 411 n n # _atom_sites.entry_id 8I2Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 K3I A 1 302 401 K3I ZEA . D 4 HOH A 1 401 9 HOH HOH . D 4 HOH A 2 402 28 HOH HOH . D 4 HOH A 3 403 6 HOH HOH . D 4 HOH A 4 404 27 HOH HOH . D 4 HOH A 5 405 16 HOH HOH . D 4 HOH A 6 406 30 HOH HOH . D 4 HOH A 7 407 14 HOH HOH . D 4 HOH A 8 408 17 HOH HOH . D 4 HOH A 9 409 32 HOH HOH . D 4 HOH A 10 410 33 HOH HOH . D 4 HOH A 11 411 21 HOH HOH . D 4 HOH A 12 412 10 HOH HOH . D 4 HOH A 13 413 39 HOH HOH . D 4 HOH A 14 414 36 HOH HOH . D 4 HOH A 15 415 20 HOH HOH . D 4 HOH A 16 416 35 HOH HOH . D 4 HOH A 17 417 18 HOH HOH . D 4 HOH A 18 418 8 HOH HOH . D 4 HOH A 19 419 37 HOH HOH . D 4 HOH A 20 420 13 HOH HOH . D 4 HOH A 21 421 29 HOH HOH . D 4 HOH A 22 422 2 HOH HOH . D 4 HOH A 23 423 4 HOH HOH . D 4 HOH A 24 424 19 HOH HOH . D 4 HOH A 25 425 40 HOH HOH . D 4 HOH A 26 426 3 HOH HOH . D 4 HOH A 27 427 26 HOH HOH . D 4 HOH A 28 428 25 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 38 HOH HOH . D 4 HOH A 31 431 5 HOH HOH . D 4 HOH A 32 432 22 HOH HOH . D 4 HOH A 33 433 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 138.049 118.721 141.834 1 73.1 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 138.258 117.544 140.875 1 73.82 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 137.175 116.539 140.941 1 76.31 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 137.13 116.001 142.36 1 83.38 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 136.989 117.091 143.379 1 70.94 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 137.384 118.363 143.17 1 76.75 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 137.148 119.347 144.226 1 66.49 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 137.512 120.677 144.259 1 71.53 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 137.221 121.588 145.305 1 68.29 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 137.543 122.954 145.246 1 70.75 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 137.332 123.969 146.166 1 62.33 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 137.739 125.308 145.938 1 73.49 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 137.563 126.391 146.841 1 70.25 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 138.03 127.659 146.516 1 79.59 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 137.983 128.804 147.3 1 82.99 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 139.441 119.351 142.02 1 74.37 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 137.192 119.751 141.081 1 69.38 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 136.349 116.568 144.629 1 71.51 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 136.532 121.096 146.495 1 64.61 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 136.941 126.049 148.104 1 68.91 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 681 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #