data_8I3A # _model_server_result.job_id rbDnALpZmU3ciIvALbfgrA _model_server_result.datetime_utc '2024-12-21 18:03:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8I3A # _exptl.entry_id 8I3A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I3A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 108 A SER 108 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 C O2B ATP . A ATP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc3 E O2B ATP . A ATP 703 1_555 F MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc4 B OG SER 108 B SER 108 1_555 F MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8I3A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 701 ATP ATP . D 3 MG A 1 702 702 MG MG . E 2 ATP A 1 703 703 ATP ATP . F 3 MG B 1 701 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 133.396 128.359 87.85 1 42.43 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . C 2 133.775 126.963 87.839 1 42.43 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . C 2 132.44 128.662 88.915 1 42.43 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . C 2 133.025 128.822 86.525 1 42.43 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . C 2 135.02 130.694 88.254 1 42.43 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . C 2 135.372 131.101 86.919 1 42.43 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . C 2 133.845 131.237 88.868 1 42.43 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . C 2 134.748 129.133 88.188 1 42.43 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . C 2 136.266 131.574 90.679 1 42.43 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . C 2 135.217 131.075 91.538 1 42.43 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . C 2 136.847 132.876 90.845 1 42.43 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . C 2 136.234 131.077 89.184 1 42.43 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . C 2 137.551 130.925 91.177 1 42.43 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . C 2 138.744 131.308 90.541 1 42.43 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . C 2 139.868 130.329 90.789 1 42.43 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . C 2 140.51 130.724 91.948 1 42.43 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . C 2 139.415 128.964 91.147 1 42.43 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . C 2 140.489 128.146 90.795 1 42.43 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . C 2 139.539 128.758 92.599 1 42.43 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . C 2 140.119 127.487 92.671 1 42.43 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . C 2 140.611 129.708 92.91 1 42.43 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . C 2 140.315 130.355 94.165 1 42.43 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . C 2 139.269 131.13 94.378 1 42.43 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . C 2 139.27 131.609 95.615 1 42.43 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . C 2 140.349 131.122 96.195 1 42.43 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . C 2 140.93 131.237 97.506 1 42.43 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . C 2 140.303 131.995 98.403 1 42.43 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . C 2 142.066 130.59 97.752 1 42.43 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . C 2 142.669 129.865 96.818 1 42.43 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . C 2 142.188 129.711 95.592 1 42.43 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . C 2 141.047 130.304 95.239 1 42.43 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #