data_8I3B # _model_server_result.job_id w5hTFu2fwlM9X0sih4wl_Q _model_server_result.datetime_utc '2024-11-08 11:37:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8I3B # _exptl.entry_id 8I3B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I3B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8I3B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 701 ATP ATP . D 2 ATP B 1 701 701 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 115.488 127.23 89.991 1 118.18 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . C 2 116.282 128.462 89.673 1 118.18 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . C 2 116.105 126.334 91.029 1 118.18 ? O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . C 2 114.931 126.518 88.796 1 118.18 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . C 2 112.926 126.894 91.013 1 118.18 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . C 2 112.153 126.683 89.745 1 118.18 ? O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . C 2 113.405 125.732 91.825 1 118.18 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . C 2 114.192 127.824 90.712 1 118.18 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . C 2 111.07 127.183 93.048 1 118.18 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . C 2 111.887 126.609 94.167 1 118.18 ? O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . C 2 110.128 126.343 92.254 1 118.18 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . C 2 112.054 127.825 91.973 1 118.18 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . C 2 110.295 128.471 93.584 1 118.18 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . C 2 109.212 129.027 92.847 1 118.18 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . C 2 109.063 130.489 93.247 1 118.18 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . C 2 108.238 130.592 94.399 1 118.18 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . C 2 110.412 131.082 93.606 1 118.18 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . C 2 110.724 132.185 92.752 1 118.18 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . C 2 110.299 131.573 95.026 1 118.18 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . C 2 110.661 132.948 95.062 1 118.18 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . C 2 108.842 131.418 95.387 1 118.18 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . C 2 108.733 130.729 96.682 1 118.18 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . C 2 109.091 129.461 96.91 1 118.18 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . C 2 108.863 129.116 98.197 1 118.18 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . C 2 108.348 130.189 98.809 1 118.18 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . C 2 107.886 130.51 100.171 1 118.18 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . C 2 107.936 129.578 101.148 1 118.18 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . C 2 107.416 131.752 100.404 1 118.18 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . C 2 107.366 132.68 99.434 1 118.18 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . C 2 107.77 132.454 98.175 1 118.18 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . C 2 108.266 131.251 97.809 1 118.18 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #