data_8I3I # _model_server_result.job_id xJ38cugnoeMYK6IkLd0BnA _model_server_result.datetime_utc '2025-07-16 12:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 8I3I # _exptl.entry_id 8I3I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I3I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . A MG 1001 1_555 F O2G ANP . A ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 E MG MG . A MG 1001 1_555 F O2B ANP . A ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 G MG MG . D MG 1001 1_555 H O2G ANP . D ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 G MG MG . D MG 1001 1_555 H O2B ANP . D ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc5 I MG MG . B MG 1001 1_555 J O2G ANP . B ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 I MG MG . B MG 1001 1_555 J O2B ANP . B ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc7 K MG MG . C MG 1001 1_555 L O2G ANP . C ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 K MG MG . C MG 1001 1_555 L O2B ANP . C ANP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8I3I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 1001 1001 MG MG . F 3 ANP A 1 1002 1101 ANP ANP . G 2 MG D 1 1001 1001 MG MG . H 3 ANP D 1 1002 1101 ANP ANP . I 2 MG B 1 1001 1001 MG MG . J 3 ANP B 1 1002 1101 ANP ANP . K 2 MG C 1 1001 1001 MG MG . L 3 ANP C 1 1002 1101 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 169.695 134.72 145.354 1 49.78 ? PG ANP 1002 A 1 HETATM 2 O O1G ANP . . . F 3 169.094 134.742 146.718 1 53.11 ? O1G ANP 1002 A 1 HETATM 3 O O2G ANP . . . F 3 170.953 135.666 145.324 1 51.41 ? O2G ANP 1002 A 1 HETATM 4 O O3G ANP . . . F 3 170.135 133.247 145.009 1 57.79 ? O3G ANP 1002 A 1 HETATM 5 P PB ANP . . . F 3 169.338 135.466 142.746 1 45.06 ? PB ANP 1002 A 1 HETATM 6 O O1B ANP . . . F 3 169.728 134.143 142.189 1 54.15 ? O1B ANP 1002 A 1 HETATM 7 O O2B ANP . . . F 3 170.612 136.328 142.966 1 51.26 ? O2B ANP 1002 A 1 HETATM 8 N N3B ANP . . . F 3 168.567 135.251 144.215 1 52.79 ? N3B ANP 1002 A 1 HETATM 9 P PA ANP . . . F 3 168.013 137.7 141.91 1 54.35 ? PA ANP 1002 A 1 HETATM 10 O O1A ANP . . . F 3 166.815 138.035 141.117 1 50.33 ? O1A ANP 1002 A 1 HETATM 11 O O2A ANP . . . F 3 167.852 137.943 143.411 1 53.74 ? O2A ANP 1002 A 1 HETATM 12 O O3A ANP . . . F 3 168.394 136.174 141.733 1 57.63 ? O3A ANP 1002 A 1 HETATM 13 O O5' ANP . . . F 3 169.236 138.503 141.317 1 57.34 ? O5' ANP 1002 A 1 HETATM 14 C C5' ANP . . . F 3 169.46 138.588 139.901 1 52.3 ? C5' ANP 1002 A 1 HETATM 15 C C4' ANP . . . F 3 170.886 138.197 139.609 1 49.51 ? C4' ANP 1002 A 1 HETATM 16 O O4' ANP . . . F 3 171.022 137.908 138.201 1 53.38 ? O4' ANP 1002 A 1 HETATM 17 C C3' ANP . . . F 3 171.926 139.269 139.905 1 47.35 ? C3' ANP 1002 A 1 HETATM 18 O O3' ANP . . . F 3 172.379 139.18 141.25 1 57.4 ? O3' ANP 1002 A 1 HETATM 19 C C2' ANP . . . F 3 173.037 138.935 138.911 1 48.61 ? C2' ANP 1002 A 1 HETATM 20 O O2' ANP . . . F 3 173.896 137.913 139.399 1 56.07 ? O2' ANP 1002 A 1 HETATM 21 C C1' ANP . . . F 3 172.24 138.431 137.706 1 50.81 ? C1' ANP 1002 A 1 HETATM 22 N N9 ANP . . . F 3 171.932 139.466 136.725 1 56.29 ? N9 ANP 1002 A 1 HETATM 23 C C8 ANP . . . F 3 170.854 140.311 136.727 1 53.57 ? C8 ANP 1002 A 1 HETATM 24 N N7 ANP . . . F 3 170.83 141.147 135.718 1 47.01 ? N7 ANP 1002 A 1 HETATM 25 C C5 ANP . . . F 3 171.975 140.832 135.003 1 49.87 ? C5 ANP 1002 A 1 HETATM 26 C C6 ANP . . . F 3 172.529 141.357 133.821 1 49.87 ? C6 ANP 1002 A 1 HETATM 27 N N6 ANP . . . F 3 171.979 142.351 133.122 1 49.71 ? N6 ANP 1002 A 1 HETATM 28 N N1 ANP . . . F 3 173.683 140.814 133.375 1 52.35 ? N1 ANP 1002 A 1 HETATM 29 C C2 ANP . . . F 3 174.236 139.816 134.07 1 47.48 ? C2 ANP 1002 A 1 HETATM 30 N N3 ANP . . . F 3 173.806 139.24 135.193 1 45.94 ? N3 ANP 1002 A 1 HETATM 31 C C4 ANP . . . F 3 172.663 139.797 135.612 1 51.99 ? C4 ANP 1002 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #