data_8I3V # _model_server_result.job_id Yj7XgvzQwjQ-PBEHjVpbXg _model_server_result.datetime_utc '2025-07-06 15:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8I3V # _exptl.entry_id 8I3V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 324.392 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I3V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 176 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 176 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 185 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 185 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H21 F N2 O' _chem_comp.formula_weight 324.392 _chem_comp.id 68P _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F01 C21 68P sing 1 n n C20 C21 68P doub 2 n y C20 C16 68P sing 3 n y C21 C19 68P sing 4 n y C16 C10 68P doub 5 n y C17 C13 68P doub 6 n y C17 C18 68P sing 7 n y N04 C24 68P trip 8 n n C19 C15 68P doub 9 n y C13 C07 68P sing 10 n y C24 C18 68P sing 11 n n C18 C14 68P doub 12 n y C10 C15 68P sing 13 n y C10 C05 68P sing 14 n n C07 C05 68P sing 15 n n C07 C08 68P doub 16 n y C14 C08 68P sing 17 n y C05 C06 68P sing 18 n n C05 O02 68P sing 19 n n C08 C11 68P sing 20 n n C23 N03 68P sing 21 n n C06 C09 68P sing 22 n n O02 C11 68P sing 23 n n C09 C12 68P sing 24 n n C22 N03 68P sing 25 n n N03 C12 68P sing 26 n n C13 H1 68P sing 27 n n C15 H2 68P sing 28 n n C17 H3 68P sing 29 n n C20 H4 68P sing 30 n n C22 H5 68P sing 31 n n C22 H6 68P sing 32 n n C22 H7 68P sing 33 n n C06 H9 68P sing 34 n n C06 H10 68P sing 35 n n C09 H11 68P sing 36 n n C09 H12 68P sing 37 n n C11 H13 68P sing 38 n n C11 H14 68P sing 39 n n C12 H15 68P sing 40 n n C12 H16 68P sing 41 n n C14 H17 68P sing 42 n n C16 H18 68P sing 43 n n C19 H19 68P sing 44 n n C23 H20 68P sing 45 n n C23 H21 68P sing 46 n n C23 H22 68P sing 47 n n # _atom_sites.entry_id 8I3V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 68P A 1 701 701 68P 68P . C 3 CL A 1 702 1 CL CL . D 4 HOH A 1 801 15 HOH HOH . D 4 HOH A 2 802 16 HOH HOH . D 4 HOH A 3 803 25 HOH HOH . D 4 HOH A 4 804 6 HOH HOH . D 4 HOH A 5 805 8 HOH HOH . D 4 HOH A 6 806 26 HOH HOH . D 4 HOH A 7 807 27 HOH HOH . D 4 HOH A 8 808 39 HOH HOH . D 4 HOH A 9 809 5 HOH HOH . D 4 HOH A 10 810 1 HOH HOH . D 4 HOH A 11 811 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 68P . . . B 2 95.48 102.739 97.213 1 53.77 ? C10 68P 701 A 1 HETATM 2 C C13 68P . . . B 2 94.562 103.3 100.407 1 49.95 ? C13 68P 701 A 1 HETATM 3 C C15 68P . . . B 2 95.397 102.012 96.034 1 49.76 ? C15 68P 701 A 1 HETATM 4 C C17 68P . . . B 2 93.482 103.161 101.293 1 52.57 ? C17 68P 701 A 1 HETATM 5 C C20 68P . . . B 2 94.69 104.684 96.032 1 51.82 ? C20 68P 701 A 1 HETATM 6 C C21 68P . . . B 2 94.629 103.933 94.897 1 53.56 ? C21 68P 701 A 1 HETATM 7 C C22 68P . . . B 2 101.033 102.574 102.2 1 52.38 ? C22 68P 701 A 1 HETATM 8 C C24 68P . . . B 2 91.62 101.846 102.224 1 50.53 ? C24 68P 701 A 1 HETATM 9 F F01 68P . . . B 2 94.21 104.526 93.747 1 60.14 ? F01 68P 701 A 1 HETATM 10 O O02 68P . . . B 2 96.012 100.652 98.344 1 57.75 ? O02 68P 701 A 1 HETATM 11 N N03 68P . . . B 2 99.809 101.876 101.797 1 55.29 ? N03 68P 701 A 1 HETATM 12 N N04 68P . . . B 2 90.714 101.753 102.914 1 55.9 ? N04 68P 701 A 1 HETATM 13 C C05 68P . . . B 2 95.939 102.08 98.511 1 52.51 ? C05 68P 701 A 1 HETATM 14 C C06 68P . . . B 2 97.313 102.596 98.922 1 49.67 ? C06 68P 701 A 1 HETATM 15 C C07 68P . . . B 2 94.874 102.239 99.575 1 51.11 ? C07 68P 701 A 1 HETATM 16 C C08 68P . . . B 2 94.118 101.082 99.592 1 57.24 ? C08 68P 701 A 1 HETATM 17 C C09 68P . . . B 2 97.898 101.933 100.158 1 52.08 ? C09 68P 701 A 1 HETATM 18 C C11 68P . . . B 2 94.692 100.146 98.572 1 56.4 ? C11 68P 701 A 1 HETATM 19 C C12 68P . . . B 2 99.274 102.449 100.556 1 52.65 ? C12 68P 701 A 1 HETATM 20 C C14 68P . . . B 2 93.055 100.937 100.456 1 53.01 ? C14 68P 701 A 1 HETATM 21 C C16 68P . . . B 2 95.117 104.077 97.201 1 49.65 ? C16 68P 701 A 1 HETATM 22 C C18 68P . . . B 2 92.733 101.981 101.314 1 51.5 ? C18 68P 701 A 1 HETATM 23 C C19 68P . . . B 2 94.97 102.614 94.862 1 49.69 ? C19 68P 701 A 1 HETATM 24 C C23 68P . . . B 2 100.085 100.444 101.641 1 51.27 ? C23 68P 701 A 1 HETATM 25 H H1 68P . . . B 2 95.074 104.093 100.39 1 51.61 ? H1 68P 701 A 1 HETATM 26 H H2 68P . . . B 2 95.637 101.1 96.03 1 50.85 ? H2 68P 701 A 1 HETATM 27 H H3 68P . . . B 2 93.261 103.881 101.882 1 52.32 ? H3 68P 701 A 1 HETATM 28 H H4 68P . . . B 2 94.448 105.592 96.02 1 51.97 ? H4 68P 701 A 1 HETATM 29 H H5 68P . . . B 2 100.845 103.526 102.309 1 50.03 ? H5 68P 701 A 1 HETATM 30 H H6 68P . . . B 2 101.354 102.207 103.046 1 51.48 ? H6 68P 701 A 1 HETATM 31 H H7 68P . . . B 2 101.718 102.455 101.513 1 50.84 ? H7 68P 701 A 1 HETATM 32 H H9 68P . . . B 2 97.937 102.463 98.17 1 50.84 ? H9 68P 701 A 1 HETATM 33 H H10 68P . . . B 2 97.249 103.565 99.088 1 51.46 ? H10 68P 701 A 1 HETATM 34 H H11 68P . . . B 2 97.288 102.07 100.913 1 51.37 ? H11 68P 701 A 1 HETATM 35 H H12 68P . . . B 2 97.965 100.967 99.997 1 51.17 ? H12 68P 701 A 1 HETATM 36 H H13 68P . . . B 2 94.171 100.16 97.746 1 52.15 ? H13 68P 701 A 1 HETATM 37 H H14 68P . . . B 2 94.727 99.233 98.912 1 51.22 ? H14 68P 701 A 1 HETATM 38 H H15 68P . . . B 2 99.224 103.423 100.655 1 50.48 ? H15 68P 701 A 1 HETATM 39 H H16 68P . . . B 2 99.901 102.26 99.826 1 50.68 ? H16 68P 701 A 1 HETATM 40 H H17 68P . . . B 2 92.56 100.144 100.464 1 51.36 ? H17 68P 701 A 1 HETATM 41 H H18 68P . . . B 2 95.166 104.581 97.997 1 51.1 ? H18 68P 701 A 1 HETATM 42 H H19 68P . . . B 2 94.917 102.124 94.06 1 51.12 ? H19 68P 701 A 1 HETATM 43 H H20 68P . . . B 2 100.458 100.092 102.473 1 50.4 ? H20 68P 701 A 1 HETATM 44 H H21 68P . . . B 2 99.257 99.971 101.433 1 50.6 ? H21 68P 701 A 1 HETATM 45 H H22 68P . . . B 2 100.726 100.312 100.916 1 51.43 ? H22 68P 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #