data_8I40 # _model_server_result.job_id yQzOY9MhHoa-_uXhASML0w _model_server_result.datetime_utc '2024-10-25 20:23:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8I40 # _exptl.entry_id 8I40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I40 _cell.length_a 59.789 _cell.length_b 165.146 _cell.length_c 188.584 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CD GLU 310 A GLU 319 1_555 E S1P COA . A COA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? metalc ? metalc1 A O GLN 202 A GLN 211 1_555 G CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc2 A OD1 ASP 230 A ASP 239 1_555 G CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc3 B O GLN 202 B GLN 211 1_555 H CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc4 B OD1 ASP 230 B ASP 239 1_555 H CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc5 C O GLN 202 C GLN 211 1_555 J CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc6 C OD2 ASP 230 C ASP 239 1_555 J CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc7 D O GLN 202 D GLN 211 1_555 K CA CA . D CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc8 D OD1 ASP 230 D ASP 239 1_555 K CA CA . D CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 8I40 _atom_sites.fract_transf_matrix[1][1] 0.016725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA A 1 501 501 COA COA . F 3 ACT A 1 502 601 ACT ACT . G 4 CA A 1 503 701 CA CA . H 4 CA B 1 701 701 CA CA . I 2 COA C 1 501 501 COA COA . J 4 CA C 1 502 701 CA CA . K 4 CA D 1 701 701 CA CA . L 5 HOH A 1 601 22 HOH HOH . L 5 HOH A 2 602 28 HOH HOH . L 5 HOH A 3 603 3 HOH HOH . L 5 HOH A 4 604 30 HOH HOH . L 5 HOH A 5 605 34 HOH HOH . L 5 HOH A 6 606 4 HOH HOH . L 5 HOH A 7 607 12 HOH HOH . L 5 HOH A 8 608 8 HOH HOH . L 5 HOH A 9 609 10 HOH HOH . M 5 HOH B 1 801 14 HOH HOH . M 5 HOH B 2 802 18 HOH HOH . M 5 HOH B 3 803 9 HOH HOH . M 5 HOH B 4 804 23 HOH HOH . M 5 HOH B 5 805 27 HOH HOH . M 5 HOH B 6 806 25 HOH HOH . M 5 HOH B 7 807 1 HOH HOH . M 5 HOH B 8 808 2 HOH HOH . N 5 HOH C 1 601 33 HOH HOH . N 5 HOH C 2 602 7 HOH HOH . N 5 HOH C 3 603 31 HOH HOH . N 5 HOH C 4 604 15 HOH HOH . N 5 HOH C 5 605 21 HOH HOH . N 5 HOH C 6 606 13 HOH HOH . N 5 HOH C 7 607 20 HOH HOH . N 5 HOH C 8 608 24 HOH HOH . N 5 HOH C 9 609 26 HOH HOH . N 5 HOH C 10 610 6 HOH HOH . N 5 HOH C 11 611 5 HOH HOH . O 5 HOH D 1 801 32 HOH HOH . O 5 HOH D 2 802 19 HOH HOH . O 5 HOH D 3 803 17 HOH HOH . O 5 HOH D 4 804 29 HOH HOH . O 5 HOH D 5 805 16 HOH HOH . O 5 HOH D 6 806 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . F 3 33.023 10.887 73.325 1 62.44 ? C ACT 502 A 1 HETATM 2 O O ACT . . . F 3 32.955 11.592 72.33 1 63.48 ? O ACT 502 A 1 HETATM 3 O OXT ACT . . . F 3 33.868 10 73.358 1 59.74 ? OXT ACT 502 A 1 HETATM 4 C CH3 ACT . . . F 3 31.806 10.774 74.167 1 62.84 ? CH3 ACT 502 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #