data_8I47
#
_model_server_result.job_id            rreYFsPAHl9XKtwv1qjJQw 
_model_server_result.datetime_utc      '2025-07-22 06:17:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i47 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":402}' 
#
_entry.id    8I47 
#
_exptl.entry_id    8I47 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    30 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I47 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I47 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 237 n n 
C5 C4 PEE sing 238 n n 
C4 O4P PEE sing 239 n n 
O4P P PEE sing 240 n n 
O1P P PEE doub 241 n n 
C1 O3P PEE sing 242 n n 
C1 C2 PEE sing 243 n n 
O3P P PEE sing 244 n n 
P O2P PEE sing 245 n n 
C2 C3 PEE sing 246 n n 
C2 O2 PEE sing 247 n n 
C3 O3 PEE sing 248 n n 
O2 C10 PEE sing 249 n n 
C31 C30 PEE sing 250 n n 
C31 C32 PEE sing 251 n n 
C33 C32 PEE sing 252 n n 
C33 C34 PEE sing 253 n n 
C30 O3 PEE sing 254 n n 
C30 O5 PEE doub 255 n n 
C10 O4 PEE doub 256 n n 
C10 C11 PEE sing 257 n n 
C34 C35 PEE sing 258 n n 
C11 C12 PEE sing 259 n n 
C35 C36 PEE sing 260 n n 
C36 C37 PEE sing 261 n n 
C37 C38 PEE sing 262 n n 
C38 C39 PEE doub 263 z n 
C12 C13 PEE sing 264 n n 
C39 C40 PEE sing 265 n n 
C13 C14 PEE sing 266 n n 
C14 C15 PEE sing 267 n n 
C40 C41 PEE sing 268 n n 
C15 C16 PEE sing 269 n n 
C41 C42 PEE sing 270 n n 
C16 C17 PEE sing 271 n n 
C42 C43 PEE sing 272 n n 
C17 C18 PEE sing 273 n n 
C43 C44 PEE sing 274 n n 
C18 C19 PEE doub 275 z n 
C46 C47 PEE sing 276 n n 
C46 C45 PEE sing 277 n n 
C44 C45 PEE sing 278 n n 
C19 C20 PEE sing 279 n n 
C20 C21 PEE sing 280 n n 
C21 C22 PEE sing 281 n n 
C22 C23 PEE sing 282 n n 
C23 C24 PEE sing 283 n n 
C24 C25 PEE sing 284 n n 
C26 C25 PEE sing 285 n n 
C26 C27 PEE sing 286 n n 
C27 H7 PEE sing 287 n n 
C27 H8 PEE sing 288 n n 
C27 H82 PEE sing 289 n n 
C26 H5 PEE sing 290 n n 
C26 H6 PEE sing 291 n n 
C25 H12 PEE sing 292 n n 
C25 H4 PEE sing 293 n n 
C24 H10 PEE sing 294 n n 
C24 H11 PEE sing 295 n n 
C23 H83 PEE sing 296 n n 
C23 H9 PEE sing 297 n n 
C22 H2 PEE sing 298 n n 
C22 H3 PEE sing 299 n n 
C21 H14 PEE sing 300 n n 
C21 H1 PEE sing 301 n n 
C20 H16 PEE sing 302 n n 
C20 H13 PEE sing 303 n n 
C19 H18 PEE sing 304 n n 
C18 H20 PEE sing 305 n n 
C17 H22 PEE sing 306 n n 
C17 H19 PEE sing 307 n n 
C16 H21 PEE sing 308 n n 
C16 H28 PEE sing 309 n n 
C15 H23 PEE sing 310 n n 
C15 H24 PEE sing 311 n n 
C14 H25 PEE sing 312 n n 
C14 H26 PEE sing 313 n n 
C13 H17 PEE sing 314 n n 
C13 H27 PEE sing 315 n n 
C12 H15 PEE sing 316 n n 
C12 H29 PEE sing 317 n n 
C11 H30 PEE sing 318 n n 
C11 H31 PEE sing 319 n n 
C2 H32 PEE sing 320 n n 
C1 H33 PEE sing 321 n n 
C1 H34 PEE sing 322 n n 
O2P H35 PEE sing 323 n n 
C4 H36 PEE sing 324 n n 
C4 H37 PEE sing 325 n n 
C5 H38 PEE sing 326 n n 
C5 H39 PEE sing 327 n n 
N H40 PEE sing 328 n n 
N H41 PEE sing 329 n n 
C3 H43 PEE sing 330 n n 
C3 H44 PEE sing 331 n n 
C31 H45 PEE sing 332 n n 
C31 H46 PEE sing 333 n n 
C32 H47 PEE sing 334 n n 
C32 H48 PEE sing 335 n n 
C33 H49 PEE sing 336 n n 
C33 H50 PEE sing 337 n n 
C34 H51 PEE sing 338 n n 
C34 H52 PEE sing 339 n n 
C35 H53 PEE sing 340 n n 
C35 H54 PEE sing 341 n n 
C36 H55 PEE sing 342 n n 
C36 H56 PEE sing 343 n n 
C37 H57 PEE sing 344 n n 
C37 H58 PEE sing 345 n n 
C38 H59 PEE sing 346 n n 
C39 H60 PEE sing 347 n n 
C40 H81 PEE sing 348 n n 
C40 H61 PEE sing 349 n n 
C41 H80 PEE sing 350 n n 
C41 H62 PEE sing 351 n n 
C42 H63 PEE sing 352 n n 
C42 H64 PEE sing 353 n n 
C43 H65 PEE sing 354 n n 
C43 H66 PEE sing 355 n n 
C44 H67 PEE sing 356 n n 
C44 H68 PEE sing 357 n n 
C45 H69 PEE sing 358 n n 
C45 H70 PEE sing 359 n n 
C46 H71 PEE sing 360 n n 
C46 H72 PEE sing 361 n n 
C47 H73 PEE sing 362 n n 
C47 H74 PEE sing 363 n n 
C47 H75 PEE sing 364 n n 
#
_atom_sites.entry_id                     8I47 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 PEE A 1 401 506 PEE PEE . 
G 2 PEE A 1 402 508 PEE PEE . 
H 2 PEE A 1 403 510 PEE PEE . 
I 2 PEE A 1 404 513 PEE PEE . 
J 2 PEE A 1 405 525 PEE PEE . 
K 2 PEE A 1 406 503 PEE PEE . 
L 2 PEE A 1 407 513 PEE PEE . 
M 2 PEE B 1 401 503 PEE PEE . 
N 2 PEE B 1 402 506 PEE PEE . 
O 2 PEE B 1 403 508 PEE PEE . 
P 2 PEE B 1 404 510 PEE PEE . 
Q 2 PEE B 1 405 525 PEE PEE . 
R 2 PEE D 1 401 506 PEE PEE . 
S 2 PEE D 1 402 508 PEE PEE . 
T 2 PEE D 1 403 510 PEE PEE . 
U 2 PEE D 1 404 525 PEE PEE . 
V 2 PEE D 1 405 503 PEE PEE . 
W 2 PEE E 1 401 503 PEE PEE . 
X 2 PEE E 1 402 513 PEE PEE . 
Y 2 PEE E 1 403 506 PEE PEE . 
Z 2 PEE E 1 404 508 PEE PEE . 
AA 2 PEE E 1 405 510 PEE PEE . 
BA 2 PEE E 1 406 525 PEE PEE . 
CA 2 PEE C 1 401 503 PEE PEE . 
DA 2 PEE C 1 402 513 PEE PEE . 
EA 2 PEE C 1 403 506 PEE PEE . 
FA 2 PEE C 1 404 508 PEE PEE . 
GA 2 PEE C 1 405 510 PEE PEE . 
HA 2 PEE C 1 406 513 PEE PEE . 
IA 2 PEE C 1 407 525 PEE PEE . 
JA 3 HOH A 1 501 607 HOH HOH . 
JA 3 HOH A 2 502 604 HOH HOH . 
JA 3 HOH A 3 503 605 HOH HOH . 
JA 3 HOH A 4 504 606 HOH HOH . 
JA 3 HOH A 5 505 602 HOH HOH . 
JA 3 HOH A 6 506 601 HOH HOH . 
KA 3 HOH B 1 501 607 HOH HOH . 
KA 3 HOH B 2 502 604 HOH HOH . 
KA 3 HOH B 3 503 605 HOH HOH . 
KA 3 HOH B 4 504 606 HOH HOH . 
KA 3 HOH B 5 505 602 HOH HOH . 
KA 3 HOH B 6 506 601 HOH HOH . 
LA 3 HOH D 1 501 607 HOH HOH . 
LA 3 HOH D 2 502 604 HOH HOH . 
LA 3 HOH D 3 503 605 HOH HOH . 
LA 3 HOH D 4 504 606 HOH HOH . 
LA 3 HOH D 5 505 602 HOH HOH . 
LA 3 HOH D 6 506 601 HOH HOH . 
MA 3 HOH E 1 501 607 HOH HOH . 
MA 3 HOH E 2 502 604 HOH HOH . 
MA 3 HOH E 3 503 605 HOH HOH . 
MA 3 HOH E 4 504 606 HOH HOH . 
MA 3 HOH E 5 505 602 HOH HOH . 
MA 3 HOH E 6 506 601 HOH HOH . 
NA 3 HOH C 1 501 607 HOH HOH . 
NA 3 HOH C 2 502 604 HOH HOH . 
NA 3 HOH C 3 503 605 HOH HOH . 
NA 3 HOH C 4 504 606 HOH HOH . 
NA 3 HOH C 5 505 602 HOH HOH . 
NA 3 HOH C 6 506 601 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 PEE . . . S 2 137.652 126.655 128.808 1 90.21 ? C15 PEE 402 D 1 
HETATM 2 C C14 PEE . . . S 2 136.661 126.266 129.897 1 92.57 ? C14 PEE 402 D 1 
HETATM 3 C C13 PEE . . . S 2 135.326 126.993 129.799 1 90.01 ? C13 PEE 402 D 1 
HETATM 4 C C12 PEE . . . S 2 134.246 126.339 130.651 1 84.44 ? C12 PEE 402 D 1 
HETATM 5 C C11 PEE . . . S 2 133.882 127.16 131.879 1 85.2 ? C11 PEE 402 D 1 
HETATM 6 C C10 PEE . . . S 2 134.593 126.703 133.121 1 99.55 ? C10 PEE 402 D 1 
HETATM 7 O O4 PEE . . . S 2 135.729 126.303 133.154 1 101.6 ? O4 PEE 402 D 1 
HETATM 8 O O2 PEE . . . S 2 133.809 126.784 134.197 1 100.87 ? O2 PEE 402 D 1 
HETATM 9 C C2 PEE . . . S 2 134.336 126.415 135.479 1 103.19 ? C2 PEE 402 D 1 
HETATM 10 C C1 PEE . . . S 2 133.908 127.388 136.564 1 107.95 ? C1 PEE 402 D 1 
HETATM 11 O O3P PEE . . . S 2 133.53 126.739 137.759 1 113.07 ? O3P PEE 402 D 1 
HETATM 12 P P PEE . . . S 2 132.899 127.655 138.958 1 132.98 ? P PEE 402 D 1 
HETATM 13 O O2P PEE . . . S 2 131.608 128.266 138.511 1 119.9 ? O2P PEE 402 D 1 
HETATM 14 O O1P PEE . . . S 2 133.938 128.521 139.603 1 125.1 ? O1P PEE 402 D 1 
HETATM 15 O O4P PEE . . . S 2 132.582 126.348 139.917 1 111.89 ? O4P PEE 402 D 1 
HETATM 16 C C4 PEE . . . S 2 131.752 126.564 141.036 1 107.52 ? C4 PEE 402 D 1 
HETATM 17 C C5 PEE . . . S 2 131.669 125.275 141.816 1 100.23 ? C5 PEE 402 D 1 
HETATM 18 N N PEE . . . S 2 133.023 124.703 142.04 1 93.3 ? N PEE 402 D 1 
HETATM 19 C C3 PEE . . . S 2 133.961 124.972 135.731 1 100.94 ? C3 PEE 402 D 1 
HETATM 20 O O3 PEE . . . S 2 134.462 124.156 134.684 1 108.74 ? O3 PEE 402 D 1 
HETATM 21 C C30 PEE . . . S 2 135.482 123.351 134.947 1 103.47 ? C30 PEE 402 D 1 
HETATM 22 O O5 PEE . . . S 2 135.834 123.063 136.063 1 100.79 ? O5 PEE 402 D 1 
HETATM 23 C C31 PEE . . . S 2 136.133 122.861 133.683 1 97.92 ? C31 PEE 402 D 1 
HETATM 24 C C32 PEE . . . S 2 135.439 121.644 133.097 1 93.14 ? C32 PEE 402 D 1 
HETATM 25 C C33 PEE . . . S 2 135.954 121.283 131.709 1 95.29 ? C33 PEE 402 D 1 
HETATM 26 C C34 PEE . . . S 2 135.883 122.466 130.753 1 92.21 ? C34 PEE 402 D 1 
HETATM 27 C C35 PEE . . . S 2 136.688 122.291 129.472 1 92.99 ? C35 PEE 402 D 1 
HETATM 28 C C36 PEE . . . S 2 136.191 121.125 128.626 1 86.94 ? C36 PEE 402 D 1 
HETATM 29 C C37 PEE . . . S 2 136.834 121.036 127.248 1 77.55 ? C37 PEE 402 D 1 
HETATM 30 C C38 PEE . . . S 2 136.236 119.921 126.399 1 73.19 ? C38 PEE 402 D 1 
#
_model_server_stats.io_time_ms              88 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#