data_8I4A # _model_server_result.job_id 2eOWMSEpWfWtO0Gjqg19lg _model_server_result.datetime_utc '2024-11-05 04:26:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 8I4A # _exptl.entry_id 8I4A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 504.626 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I4A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H40 N8 O4' _chem_comp.formula_weight 504.626 _chem_comp.id H9F _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 H9F sing 129 n n C17 C16 H9F sing 130 n n C18 C19 H9F sing 131 n n C16 C15 H9F sing 132 n n C22 C23 H9F sing 133 n n C22 C21 H9F sing 134 n n C19 N7 H9F sing 135 n n O2 C10 H9F sing 136 n n C23 C24 H9F sing 137 n n C21 C20 H9F sing 138 n n C9 C10 H9F sing 139 n n C9 N5 H9F sing 140 n n C15 N7 H9F sing 141 n n N7 C2 H9F sing 142 n n C2 N1 H9F doub 143 n y C2 C1 H9F sing 144 n y N1 C3 H9F sing 145 n y C1 N4 H9F sing 146 n y C1 C4 H9F doub 147 n y N4 C6 H9F doub 148 n y C13 N6 H9F sing 149 n n C13 C14 H9F sing 150 n n C6 N6 H9F sing 151 n n C6 N3 H9F sing 152 n y C3 N2 H9F doub 153 n y C3 N5 H9F sing 154 n n C4 N2 H9F sing 155 n y C4 C5 H9F sing 156 n y C24 N8 H9F sing 157 n n N5 C7 H9F sing 158 n n N6 C11 H9F sing 159 n n C5 N3 H9F doub 160 n y C5 N8 H9F sing 161 n n N8 C20 H9F sing 162 n n C11 C12 H9F sing 163 n n C7 C8 H9F sing 164 n n C14 O4 H9F sing 165 n n C12 O3 H9F sing 166 n n C8 O1 H9F sing 167 n n C7 H1 H9F sing 168 n n C7 H2 H9F sing 169 n n C8 H3 H9F sing 170 n n C8 H4 H9F sing 171 n n C10 H5 H9F sing 172 n n C10 H6 H9F sing 173 n n C13 H7 H9F sing 174 n n C13 H8 H9F sing 175 n n C15 H9 H9F sing 176 n n C15 H10 H9F sing 177 n n C17 H11 H9F sing 178 n n C17 H12 H9F sing 179 n n C20 H13 H9F sing 180 n n C20 H14 H9F sing 181 n n C21 H15 H9F sing 182 n n C21 H16 H9F sing 183 n n C22 H17 H9F sing 184 n n C22 H18 H9F sing 185 n n C24 H19 H9F sing 186 n n C24 H20 H9F sing 187 n n O1 H21 H9F sing 188 n n C9 H22 H9F sing 189 n n C9 H23 H9F sing 190 n n O2 H24 H9F sing 191 n n C11 H25 H9F sing 192 n n C11 H26 H9F sing 193 n n C12 H27 H9F sing 194 n n C12 H28 H9F sing 195 n n O3 H29 H9F sing 196 n n C14 H30 H9F sing 197 n n C14 H31 H9F sing 198 n n O4 H32 H9F sing 199 n n C16 H33 H9F sing 200 n n C16 H34 H9F sing 201 n n C18 H35 H9F sing 202 n n C18 H36 H9F sing 203 n n C19 H37 H9F sing 204 n n C19 H38 H9F sing 205 n n C23 H39 H9F sing 206 n n C23 H40 H9F sing 207 n n # _atom_sites.entry_id 8I4A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id H9F _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1401 _pdbx_nonpoly_scheme.auth_seq_num 1301 _pdbx_nonpoly_scheme.pdb_mon_id H9F _pdbx_nonpoly_scheme.auth_mon_id H9F _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H9F . . . B 2 126.809 128.345 113.059 1 10 ? N1 H9F 1401 A 1 HETATM 2 N N3 H9F . . . B 2 129.994 129.262 116.574 1 10 ? N3 H9F 1401 A 1 HETATM 3 C C4 H9F . . . B 2 128.453 128.208 115.182 1 10 ? C4 H9F 1401 A 1 HETATM 4 C C5 H9F . . . B 2 129.313 128.181 116.269 1 10 ? C5 H9F 1401 A 1 HETATM 5 C C6 H9F . . . B 2 129.874 130.362 115.869 1 10 ? C6 H9F 1401 A 1 HETATM 6 C C7 H9F . . . B 2 125.105 125.589 114.26 1 10 ? C7 H9F 1401 A 1 HETATM 7 C C8 H9F . . . B 2 123.776 126.24 113.883 1 10 ? C8 H9F 1401 A 1 HETATM 8 C C10 H9F . . . B 2 126.537 123.9 112.379 1 10 ? C10 H9F 1401 A 1 HETATM 9 C C13 H9F . . . B 2 130.136 132.858 115.999 1 10 ? C13 H9F 1401 A 1 HETATM 10 C C15 H9F . . . B 2 127.146 130.557 111.135 1 10 ? C15 H9F 1401 A 1 HETATM 11 C C17 H9F . . . B 2 127.615 133.026 110.952 1 10 ? C17 H9F 1401 A 1 HETATM 12 C C20 H9F . . . B 2 129.461 127.037 118.456 1 10 ? C20 H9F 1401 A 1 HETATM 13 C C21 H9F . . . B 2 129.271 125.643 119.036 1 10 ? C21 H9F 1401 A 1 HETATM 14 C C22 H9F . . . B 2 130.45 124.711 118.571 1 10 ? C22 H9F 1401 A 1 HETATM 15 C C24 H9F . . . B 2 129.587 125.729 116.416 1 10 ? C24 H9F 1401 A 1 HETATM 16 C C1 H9F . . . B 2 128.35 129.403 114.45 1 10 ? C1 H9F 1401 A 1 HETATM 17 C C2 H9F . . . B 2 127.489 129.428 113.362 1 10 ? C2 H9F 1401 A 1 HETATM 18 C C3 H9F . . . B 2 126.93 127.246 113.765 1 10 ? C3 H9F 1401 A 1 HETATM 19 N N2 H9F . . . B 2 127.73 127.159 114.808 1 10 ? N2 H9F 1401 A 1 HETATM 20 N N4 H9F . . . B 2 129.074 130.451 114.825 1 10 ? N4 H9F 1401 A 1 HETATM 21 N N5 H9F . . . B 2 126.154 126.08 113.384 1 10 ? N5 H9F 1401 A 1 HETATM 22 O O1 H9F . . . B 2 122.816 125.937 114.857 1 10 ? O1 H9F 1401 A 1 HETATM 23 C C9 H9F . . . B 2 126.428 125.403 112.13 1 10 ? C9 H9F 1401 A 1 HETATM 24 O O2 H9F . . . B 2 125.256 123.335 112.391 1 10 ? O2 H9F 1401 A 1 HETATM 25 N N6 H9F . . . B 2 130.651 131.525 116.252 1 10 ? N6 H9F 1401 A 1 HETATM 26 C C11 H9F . . . B 2 131.944 131.356 116.888 1 10 ? C11 H9F 1401 A 1 HETATM 27 C C12 H9F . . . B 2 131.822 131.66 118.38 1 10 ? C12 H9F 1401 A 1 HETATM 28 O O3 H9F . . . B 2 132.451 130.648 119.116 1 10 ? O3 H9F 1401 A 1 HETATM 29 C C14 H9F . . . B 2 130.058 133.097 114.493 1 10 ? C14 H9F 1401 A 1 HETATM 30 O O4 H9F . . . B 2 129.736 134.439 114.249 1 10 ? O4 H9F 1401 A 1 HETATM 31 N N7 H9F . . . B 2 127.342 130.635 112.57 1 10 ? N7 H9F 1401 A 1 HETATM 32 N N8 H9F . . . B 2 129.455 126.971 117.057 1 10 ? N8 H9F 1401 A 1 HETATM 33 C C16 H9F . . . B 2 127.994 131.63 110.454 1 10 ? C16 H9F 1401 A 1 HETATM 34 C C18 H9F . . . B 2 126.784 132.955 112.234 1 10 ? C18 H9F 1401 A 1 HETATM 35 C C19 H9F . . . B 2 127.389 131.938 113.198 1 10 ? C19 H9F 1401 A 1 HETATM 36 C C23 H9F . . . B 2 130.739 124.948 117.04 1 10 ? C23 H9F 1401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #