data_8I4P # _model_server_result.job_id 5uoNTlDlccBXGpJ1PLWVcw _model_server_result.datetime_utc '2024-12-21 17:25:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8I4P # _exptl.entry_id 8I4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I4P _cell.length_a 101.721 _cell.length_b 101.721 _cell.length_c 311.936 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 8I4P _atom_sites.fract_transf_matrix[1][1] 0.009831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 407 GOL GOL . C 2 GOL A 1 402 409 GOL GOL . D 3 FAD A 1 403 410 FAD FAD . E 4 HOH A 1 501 112 HOH HOH . E 4 HOH A 2 502 102 HOH HOH . E 4 HOH A 3 503 82 HOH HOH . E 4 HOH A 4 504 162 HOH HOH . E 4 HOH A 5 505 91 HOH HOH . E 4 HOH A 6 506 128 HOH HOH . E 4 HOH A 7 507 100 HOH HOH . E 4 HOH A 8 508 92 HOH HOH . E 4 HOH A 9 509 36 HOH HOH . E 4 HOH A 10 510 41 HOH HOH . E 4 HOH A 11 511 24 HOH HOH . E 4 HOH A 12 512 76 HOH HOH . E 4 HOH A 13 513 101 HOH HOH . E 4 HOH A 14 514 72 HOH HOH . E 4 HOH A 15 515 16 HOH HOH . E 4 HOH A 16 516 32 HOH HOH . E 4 HOH A 17 517 57 HOH HOH . E 4 HOH A 18 518 106 HOH HOH . E 4 HOH A 19 519 50 HOH HOH . E 4 HOH A 20 520 108 HOH HOH . E 4 HOH A 21 521 87 HOH HOH . E 4 HOH A 22 522 66 HOH HOH . E 4 HOH A 23 523 147 HOH HOH . E 4 HOH A 24 524 96 HOH HOH . E 4 HOH A 25 525 114 HOH HOH . E 4 HOH A 26 526 109 HOH HOH . E 4 HOH A 27 527 49 HOH HOH . E 4 HOH A 28 528 23 HOH HOH . E 4 HOH A 29 529 8 HOH HOH . E 4 HOH A 30 530 139 HOH HOH . E 4 HOH A 31 531 55 HOH HOH . E 4 HOH A 32 532 107 HOH HOH . E 4 HOH A 33 533 68 HOH HOH . E 4 HOH A 34 534 54 HOH HOH . E 4 HOH A 35 535 75 HOH HOH . E 4 HOH A 36 536 131 HOH HOH . E 4 HOH A 37 537 74 HOH HOH . E 4 HOH A 38 538 19 HOH HOH . E 4 HOH A 39 539 73 HOH HOH . E 4 HOH A 40 540 148 HOH HOH . E 4 HOH A 41 541 65 HOH HOH . E 4 HOH A 42 542 161 HOH HOH . E 4 HOH A 43 543 177 HOH HOH . E 4 HOH A 44 544 71 HOH HOH . E 4 HOH A 45 545 63 HOH HOH . E 4 HOH A 46 546 103 HOH HOH . E 4 HOH A 47 547 28 HOH HOH . E 4 HOH A 48 548 144 HOH HOH . E 4 HOH A 49 549 156 HOH HOH . E 4 HOH A 50 550 86 HOH HOH . E 4 HOH A 51 551 132 HOH HOH . E 4 HOH A 52 552 21 HOH HOH . E 4 HOH A 53 553 135 HOH HOH . E 4 HOH A 54 554 154 HOH HOH . E 4 HOH A 55 555 13 HOH HOH . E 4 HOH A 56 556 153 HOH HOH . E 4 HOH A 57 557 123 HOH HOH . E 4 HOH A 58 558 43 HOH HOH . E 4 HOH A 59 559 33 HOH HOH . E 4 HOH A 60 560 151 HOH HOH . E 4 HOH A 61 561 44 HOH HOH . E 4 HOH A 62 562 14 HOH HOH . E 4 HOH A 63 563 81 HOH HOH . E 4 HOH A 64 564 62 HOH HOH . E 4 HOH A 65 565 56 HOH HOH . E 4 HOH A 66 566 117 HOH HOH . E 4 HOH A 67 567 150 HOH HOH . E 4 HOH A 68 568 121 HOH HOH . E 4 HOH A 69 569 88 HOH HOH . E 4 HOH A 70 570 111 HOH HOH . E 4 HOH A 71 571 140 HOH HOH . E 4 HOH A 72 572 90 HOH HOH . E 4 HOH A 73 573 58 HOH HOH . E 4 HOH A 74 574 64 HOH HOH . E 4 HOH A 75 575 35 HOH HOH . E 4 HOH A 76 576 133 HOH HOH . E 4 HOH A 77 577 60 HOH HOH . E 4 HOH A 78 578 18 HOH HOH . E 4 HOH A 79 579 10 HOH HOH . E 4 HOH A 80 580 174 HOH HOH . E 4 HOH A 81 581 45 HOH HOH . E 4 HOH A 82 582 42 HOH HOH . E 4 HOH A 83 583 116 HOH HOH . E 4 HOH A 84 584 118 HOH HOH . E 4 HOH A 85 585 155 HOH HOH . E 4 HOH A 86 586 59 HOH HOH . E 4 HOH A 87 587 47 HOH HOH . E 4 HOH A 88 588 143 HOH HOH . E 4 HOH A 89 589 46 HOH HOH . E 4 HOH A 90 590 79 HOH HOH . E 4 HOH A 91 591 110 HOH HOH . E 4 HOH A 92 592 37 HOH HOH . E 4 HOH A 93 593 142 HOH HOH . E 4 HOH A 94 594 138 HOH HOH . E 4 HOH A 95 595 129 HOH HOH . E 4 HOH A 96 596 93 HOH HOH . E 4 HOH A 97 597 119 HOH HOH . E 4 HOH A 98 598 137 HOH HOH . E 4 HOH A 99 599 89 HOH HOH . E 4 HOH A 100 600 22 HOH HOH . E 4 HOH A 101 601 95 HOH HOH . E 4 HOH A 102 602 164 HOH HOH . E 4 HOH A 103 603 34 HOH HOH . E 4 HOH A 104 604 4 HOH HOH . E 4 HOH A 105 605 51 HOH HOH . E 4 HOH A 106 606 70 HOH HOH . E 4 HOH A 107 607 77 HOH HOH . E 4 HOH A 108 608 39 HOH HOH . E 4 HOH A 109 609 2 HOH HOH . E 4 HOH A 110 610 125 HOH HOH . E 4 HOH A 111 611 40 HOH HOH . E 4 HOH A 112 612 67 HOH HOH . E 4 HOH A 113 613 12 HOH HOH . E 4 HOH A 114 614 9 HOH HOH . E 4 HOH A 115 615 145 HOH HOH . E 4 HOH A 116 616 20 HOH HOH . E 4 HOH A 117 617 29 HOH HOH . E 4 HOH A 118 618 130 HOH HOH . E 4 HOH A 119 619 160 HOH HOH . E 4 HOH A 120 620 83 HOH HOH . E 4 HOH A 121 621 26 HOH HOH . E 4 HOH A 122 622 15 HOH HOH . E 4 HOH A 123 623 31 HOH HOH . E 4 HOH A 124 624 124 HOH HOH . E 4 HOH A 125 625 25 HOH HOH . E 4 HOH A 126 626 167 HOH HOH . E 4 HOH A 127 627 11 HOH HOH . E 4 HOH A 128 628 94 HOH HOH . E 4 HOH A 129 629 97 HOH HOH . E 4 HOH A 130 630 176 HOH HOH . E 4 HOH A 131 631 113 HOH HOH . E 4 HOH A 132 632 52 HOH HOH . E 4 HOH A 133 633 120 HOH HOH . E 4 HOH A 134 634 165 HOH HOH . E 4 HOH A 135 635 48 HOH HOH . E 4 HOH A 136 636 78 HOH HOH . E 4 HOH A 137 637 115 HOH HOH . E 4 HOH A 138 638 99 HOH HOH . E 4 HOH A 139 639 104 HOH HOH . E 4 HOH A 140 640 98 HOH HOH . E 4 HOH A 141 641 7 HOH HOH . E 4 HOH A 142 642 84 HOH HOH . E 4 HOH A 143 643 53 HOH HOH . E 4 HOH A 144 644 27 HOH HOH . E 4 HOH A 145 645 122 HOH HOH . E 4 HOH A 146 646 38 HOH HOH . E 4 HOH A 147 647 5 HOH HOH . E 4 HOH A 148 648 152 HOH HOH . E 4 HOH A 149 649 149 HOH HOH . E 4 HOH A 150 650 159 HOH HOH . E 4 HOH A 151 651 166 HOH HOH . E 4 HOH A 152 652 6 HOH HOH . E 4 HOH A 153 653 157 HOH HOH . E 4 HOH A 154 654 3 HOH HOH . E 4 HOH A 155 655 30 HOH HOH . E 4 HOH A 156 656 163 HOH HOH . E 4 HOH A 157 657 69 HOH HOH . E 4 HOH A 158 658 126 HOH HOH . E 4 HOH A 159 659 173 HOH HOH . E 4 HOH A 160 660 141 HOH HOH . E 4 HOH A 161 661 158 HOH HOH . E 4 HOH A 162 662 172 HOH HOH . E 4 HOH A 163 663 80 HOH HOH . E 4 HOH A 164 664 171 HOH HOH . E 4 HOH A 165 665 168 HOH HOH . E 4 HOH A 166 666 134 HOH HOH . E 4 HOH A 167 667 175 HOH HOH . E 4 HOH A 168 668 178 HOH HOH . E 4 HOH A 169 669 170 HOH HOH . E 4 HOH A 170 670 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 16.864 2.29 23.129 1 45.13 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 2 17.338 3.486 22.505 1 40.17 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 2 15.463 2.435 23.722 1 44.42 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 2 15.032 3.805 23.752 1 32.77 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 2 15.334 1.75 25.082 1 41.73 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 2 14.001 1.745 25.62 1 28.87 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #