data_8I4R # _model_server_result.job_id w62UvSbCyU0aT_2JcuAFNg _model_server_result.datetime_utc '2025-02-05 15:43:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8I4R # _exptl.entry_id 8I4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I4R _cell.length_a 102.143 _cell.length_b 102.143 _cell.length_c 312.183 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 174 n n PA O2A FAD sing 175 n n PA O5B FAD sing 176 n n PA O3P FAD sing 177 n n O2A HOA2 FAD sing 178 n n O5B C5B FAD sing 179 n n C5B C4B FAD sing 180 n n C5B H51A FAD sing 181 n n C5B H52A FAD sing 182 n n C4B O4B FAD sing 183 n n C4B C3B FAD sing 184 n n C4B H4B FAD sing 185 n n O4B C1B FAD sing 186 n n C3B O3B FAD sing 187 n n C3B C2B FAD sing 188 n n C3B H3B FAD sing 189 n n O3B HO3A FAD sing 190 n n C2B O2B FAD sing 191 n n C2B C1B FAD sing 192 n n C2B H2B FAD sing 193 n n O2B HO2A FAD sing 194 n n C1B N9A FAD sing 195 n n C1B H1B FAD sing 196 n n N9A C8A FAD sing 197 n y N9A C4A FAD sing 198 n y C8A N7A FAD doub 199 n y C8A H8A FAD sing 200 n n N7A C5A FAD sing 201 n y C5A C6A FAD sing 202 n y C5A C4A FAD doub 203 n y C6A N6A FAD sing 204 n n C6A N1A FAD doub 205 n y N6A H61A FAD sing 206 n n N6A H62A FAD sing 207 n n N1A C2A FAD sing 208 n y C2A N3A FAD doub 209 n y C2A H2A FAD sing 210 n n N3A C4A FAD sing 211 n y N1 C2 FAD sing 212 n n N1 C10 FAD doub 213 n n C2 O2 FAD doub 214 n n C2 N3 FAD sing 215 n n N3 C4 FAD sing 216 n n N3 HN3 FAD sing 217 n n C4 O4 FAD doub 218 n n C4 C4X FAD sing 219 n n C4X N5 FAD doub 220 n n C4X C10 FAD sing 221 n n N5 C5X FAD sing 222 n n C5X C6 FAD doub 223 n y C5X C9A FAD sing 224 n y C6 C7 FAD sing 225 n y C6 H6 FAD sing 226 n n C7 C7M FAD sing 227 n n C7 C8 FAD doub 228 n y C7M HM71 FAD sing 229 n n C7M HM72 FAD sing 230 n n C7M HM73 FAD sing 231 n n C8 C8M FAD sing 232 n n C8 C9 FAD sing 233 n y C8M HM81 FAD sing 234 n n C8M HM82 FAD sing 235 n n C8M HM83 FAD sing 236 n n C9 C9A FAD doub 237 n y C9 H9 FAD sing 238 n n C9A N10 FAD sing 239 n n N10 C10 FAD sing 240 n n N10 C1' FAD sing 241 n n C1' C2' FAD sing 242 n n C1' "H1'1" FAD sing 243 n n C1' "H1'2" FAD sing 244 n n C2' O2' FAD sing 245 n n C2' C3' FAD sing 246 n n C2' H2' FAD sing 247 n n O2' HO2' FAD sing 248 n n C3' O3' FAD sing 249 n n C3' C4' FAD sing 250 n n C3' H3' FAD sing 251 n n O3' HO3' FAD sing 252 n n C4' O4' FAD sing 253 n n C4' C5' FAD sing 254 n n C4' H4' FAD sing 255 n n O4' HO4' FAD sing 256 n n C5' O5' FAD sing 257 n n C5' "H5'1" FAD sing 258 n n C5' "H5'2" FAD sing 259 n n O5' P FAD sing 260 n n P O1P FAD doub 261 n n P O2P FAD sing 262 n n P O3P FAD sing 263 n n O2P HOP2 FAD sing 264 n n # _atom_sites.entry_id 8I4R _atom_sites.fract_transf_matrix[1][1] 0.00979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 401 401 FAD FAD . C 3 ACO A 1 402 402 ACO ACO . D 4 HOH A 1 501 181 HOH HOH . D 4 HOH A 2 502 182 HOH HOH . D 4 HOH A 3 503 203 HOH HOH . D 4 HOH A 4 504 166 HOH HOH . D 4 HOH A 5 505 15 HOH HOH . D 4 HOH A 6 506 188 HOH HOH . D 4 HOH A 7 507 174 HOH HOH . D 4 HOH A 8 508 173 HOH HOH . D 4 HOH A 9 509 206 HOH HOH . D 4 HOH A 10 510 205 HOH HOH . D 4 HOH A 11 511 1 HOH HOH . D 4 HOH A 12 512 178 HOH HOH . D 4 HOH A 13 513 49 HOH HOH . D 4 HOH A 14 514 211 HOH HOH . D 4 HOH A 15 515 214 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 192 HOH HOH . D 4 HOH A 18 518 201 HOH HOH . D 4 HOH A 19 519 172 HOH HOH . D 4 HOH A 20 520 177 HOH HOH . D 4 HOH A 21 521 184 HOH HOH . D 4 HOH A 22 522 167 HOH HOH . D 4 HOH A 23 523 186 HOH HOH . D 4 HOH A 24 524 37 HOH HOH . D 4 HOH A 25 525 183 HOH HOH . D 4 HOH A 26 526 169 HOH HOH . D 4 HOH A 27 527 218 HOH HOH . D 4 HOH A 28 528 215 HOH HOH . D 4 HOH A 29 529 199 HOH HOH . D 4 HOH A 30 530 171 HOH HOH . D 4 HOH A 31 531 195 HOH HOH . D 4 HOH A 32 532 22 HOH HOH . D 4 HOH A 33 533 168 HOH HOH . D 4 HOH A 34 534 159 HOH HOH . D 4 HOH A 35 535 9 HOH HOH . D 4 HOH A 36 536 196 HOH HOH . D 4 HOH A 37 537 207 HOH HOH . D 4 HOH A 38 538 191 HOH HOH . D 4 HOH A 39 539 160 HOH HOH . D 4 HOH A 40 540 24 HOH HOH . D 4 HOH A 41 541 217 HOH HOH . D 4 HOH A 42 542 164 HOH HOH . D 4 HOH A 43 543 202 HOH HOH . D 4 HOH A 44 544 158 HOH HOH . D 4 HOH A 45 545 162 HOH HOH . D 4 HOH A 46 546 170 HOH HOH . D 4 HOH A 47 547 198 HOH HOH . D 4 HOH A 48 548 204 HOH HOH . D 4 HOH A 49 549 8 HOH HOH . D 4 HOH A 50 550 185 HOH HOH . D 4 HOH A 51 551 179 HOH HOH . D 4 HOH A 52 552 175 HOH HOH . D 4 HOH A 53 553 163 HOH HOH . D 4 HOH A 54 554 176 HOH HOH . D 4 HOH A 55 555 194 HOH HOH . D 4 HOH A 56 556 12 HOH HOH . D 4 HOH A 57 557 17 HOH HOH . D 4 HOH A 58 558 16 HOH HOH . D 4 HOH A 59 559 200 HOH HOH . D 4 HOH A 60 560 161 HOH HOH . D 4 HOH A 61 561 213 HOH HOH . D 4 HOH A 62 562 208 HOH HOH . D 4 HOH A 63 563 193 HOH HOH . D 4 HOH A 64 564 180 HOH HOH . D 4 HOH A 65 565 216 HOH HOH . D 4 HOH A 66 566 190 HOH HOH . D 4 HOH A 67 567 212 HOH HOH . D 4 HOH A 68 568 165 HOH HOH . D 4 HOH A 69 569 209 HOH HOH . D 4 HOH A 70 570 189 HOH HOH . D 4 HOH A 71 571 187 HOH HOH . D 4 HOH A 72 572 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -11.349 16.027 15.083 1 28.38 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . B 2 -12.612 15.678 15.81 1 26.58 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . B 2 -11.042 17.386 14.543 1 25.34 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . B 2 -11.166 15.002 13.86 1 29.72 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . B 2 -11.68 13.627 13.956 1 26.05 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . B 2 -11.353 12.917 12.68 1 24.15 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . B 2 -11.965 13.703 11.631 1 23.05 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . B 2 -9.857 12.842 12.338 1 25.05 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . B 2 -9.467 11.641 11.681 1 25.3 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . B 2 -9.668 14.022 11.384 1 23.62 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . B 2 -8.503 13.805 10.616 1 21.98 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . B 2 -11.007 13.967 10.646 1 23.28 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . B 2 -11.35 15.235 10.02 1 28.17 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . B 2 -11.596 16.415 10.677 1 28.37 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . B 2 -11.804 17.415 9.86 1 27.08 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . B 2 -11.711 16.855 8.593 1 28.72 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . B 2 -11.833 17.415 7.309 1 28.78 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . B 2 -12.109 18.689 7.13 1 29.46 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . B 2 -11.706 16.598 6.232 1 26.74 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . B 2 -11.461 15.291 6.476 1 27.9 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . B 2 -11.302 14.652 7.643 1 23.12 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . B 2 -11.483 15.497 8.675 1 26.77 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . B 2 -3.512 20.63 20.787 1 43.66 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . B 2 -2.946 21.803 21.173 1 43.6 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . B 2 -3.486 22.863 20.912 1 35.36 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . B 2 -1.743 21.855 21.87 1 46.54 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . B 2 -1.098 20.708 22.283 1 44.31 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . B 2 -0.073 20.812 22.934 1 40.71 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . B 2 -1.691 19.419 21.902 1 52.74 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . B 2 -1.106 18.275 22.277 1 50.16 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . B 2 -1.73 17.088 21.947 1 49.54 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . B 2 -1.165 15.874 22.388 1 44.97 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . B 2 -1.758 14.664 22.112 1 42.92 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . B 2 -1.104 13.406 22.607 1 45.58 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . B 2 -2.97 14.617 21.337 1 48.2 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . B 2 -3.67 13.326 20.975 1 45.34 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . B 2 -3.512 15.791 20.891 1 49.46 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . B 2 -2.926 17.039 21.181 1 52.73 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . B 2 -3.508 18.25 20.774 1 53.25 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . B 2 -2.937 19.489 21.15 1 51.97 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . B 2 -4.758 18.221 19.977 1 53.42 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . B 2 -4.601 17.621 18.537 1 50.52 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . B 2 -3.824 18.404 17.595 1 49.06 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . B 2 -6.014 17.435 17.968 1 45.62 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . B 2 -6.547 16.172 18.406 1 42.09 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . B 2 -6.091 17.45 16.449 1 42.06 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . B 2 -6.036 18.8 15.969 1 44.42 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . B 2 -7.353 16.736 16.018 1 43.84 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . B 2 -8.489 17.25 16.755 1 33.62 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . B 2 -9.623 16.288 17.355 1 30.81 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . B 2 -10.688 17.175 17.932 1 33.58 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . B 2 -9.102 15.24 18.266 1 30.59 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . B 2 -10.203 15.543 16.073 1 31.88 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #