data_8I4R
#
_model_server_result.job_id            5r6m8XYjRkFmVyDJUDNCsQ 
_model_server_result.datetime_utc      '2025-02-05 15:48:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    8I4R 
#
_exptl.entry_id    8I4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              809.571 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETYL COENZYME *A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I4R 
_cell.length_a            102.143 
_cell.length_b            102.143 
_cell.length_c            312.183 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H38 N7 O17 P3 S' 
_chem_comp.formula_weight    809.571 
_chem_comp.id                ACO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETYL COENZYME *A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A ACO sing 1 n y 
N1A C6A ACO doub 2 n y 
C2A N3A ACO doub 3 n y 
C2A H2A ACO sing 4 n n 
N3A C4A ACO sing 5 n y 
C4A C5A ACO doub 6 n y 
C4A N9A ACO sing 7 n y 
C5A C6A ACO sing 8 n y 
C5A N7A ACO sing 9 n y 
C6A N6A ACO sing 10 n n 
N6A H61A ACO sing 11 n n 
N6A H62A ACO sing 12 n n 
N7A C8A ACO doub 13 n y 
C8A N9A ACO sing 14 n y 
C8A H8A ACO sing 15 n n 
N9A C1B ACO sing 16 n n 
C1B C2B ACO sing 17 n n 
C1B O4B ACO sing 18 n n 
C1B H1B ACO sing 19 n n 
C2B O2B ACO sing 20 n n 
C2B C3B ACO sing 21 n n 
C2B H2B ACO sing 22 n n 
O2B HO2A ACO sing 23 n n 
C3B O3B ACO sing 24 n n 
C3B C4B ACO sing 25 n n 
C3B H3B ACO sing 26 n n 
O3B P3B ACO sing 27 n n 
P3B O7A ACO doub 28 n n 
P3B O8A ACO sing 29 n n 
P3B O9A ACO sing 30 n n 
O8A HOA8 ACO sing 31 n n 
O9A HOA9 ACO sing 32 n n 
C4B O4B ACO sing 33 n n 
C4B C5B ACO sing 34 n n 
C4B H4B ACO sing 35 n n 
C5B O5B ACO sing 36 n n 
C5B H51A ACO sing 37 n n 
C5B H52A ACO sing 38 n n 
O5B P1A ACO sing 39 n n 
P1A O1A ACO doub 40 n n 
P1A O2A ACO sing 41 n n 
P1A O3A ACO sing 42 n n 
O2A HOA2 ACO sing 43 n n 
O3A P2A ACO sing 44 n n 
P2A O4A ACO doub 45 n n 
P2A O5A ACO sing 46 n n 
P2A O6A ACO sing 47 n n 
O5A HOA5 ACO sing 48 n n 
O6A CCP ACO sing 49 n n 
CBP CCP ACO sing 50 n n 
CBP CDP ACO sing 51 n n 
CBP CEP ACO sing 52 n n 
CBP CAP ACO sing 53 n n 
CCP H121 ACO sing 54 n n 
CCP H122 ACO sing 55 n n 
CDP H131 ACO sing 56 n n 
CDP H132 ACO sing 57 n n 
CDP H133 ACO sing 58 n n 
CEP H141 ACO sing 59 n n 
CEP H142 ACO sing 60 n n 
CEP H143 ACO sing 61 n n 
CAP OAP ACO sing 62 n n 
CAP C9P ACO sing 63 n n 
CAP H10 ACO sing 64 n n 
OAP HO1 ACO sing 65 n n 
C9P O9P ACO doub 66 n n 
C9P N8P ACO sing 67 n n 
N8P C7P ACO sing 68 n n 
N8P HN8 ACO sing 69 n n 
C7P C6P ACO sing 70 n n 
C7P H71 ACO sing 71 n n 
C7P H72 ACO sing 72 n n 
C6P C5P ACO sing 73 n n 
C6P H61 ACO sing 74 n n 
C6P H62 ACO sing 75 n n 
C5P O5P ACO doub 76 n n 
C5P N4P ACO sing 77 n n 
N4P C3P ACO sing 78 n n 
N4P HN4 ACO sing 79 n n 
C3P C2P ACO sing 80 n n 
C3P H31 ACO sing 81 n n 
C3P H32 ACO sing 82 n n 
C2P S1P ACO sing 83 n n 
C2P H21 ACO sing 84 n n 
C2P H22 ACO sing 85 n n 
S1P C ACO sing 86 n n 
C O ACO doub 87 n n 
C CH3 ACO sing 88 n n 
CH3 HH31 ACO sing 89 n n 
CH3 HH32 ACO sing 90 n n 
CH3 HH33 ACO sing 91 n n 
#
_atom_sites.entry_id                     8I4R 
_atom_sites.fract_transf_matrix[1][1]    0.00979 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00979 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 401 401 FAD FAD . 
C 3 ACO A 1 402 402 ACO ACO . 
D 4 HOH A 1 501 181 HOH HOH . 
D 4 HOH A 2 502 182 HOH HOH . 
D 4 HOH A 3 503 203 HOH HOH . 
D 4 HOH A 4 504 166 HOH HOH . 
D 4 HOH A 5 505 15 HOH HOH . 
D 4 HOH A 6 506 188 HOH HOH . 
D 4 HOH A 7 507 174 HOH HOH . 
D 4 HOH A 8 508 173 HOH HOH . 
D 4 HOH A 9 509 206 HOH HOH . 
D 4 HOH A 10 510 205 HOH HOH . 
D 4 HOH A 11 511 1 HOH HOH . 
D 4 HOH A 12 512 178 HOH HOH . 
D 4 HOH A 13 513 49 HOH HOH . 
D 4 HOH A 14 514 211 HOH HOH . 
D 4 HOH A 15 515 214 HOH HOH . 
D 4 HOH A 16 516 19 HOH HOH . 
D 4 HOH A 17 517 192 HOH HOH . 
D 4 HOH A 18 518 201 HOH HOH . 
D 4 HOH A 19 519 172 HOH HOH . 
D 4 HOH A 20 520 177 HOH HOH . 
D 4 HOH A 21 521 184 HOH HOH . 
D 4 HOH A 22 522 167 HOH HOH . 
D 4 HOH A 23 523 186 HOH HOH . 
D 4 HOH A 24 524 37 HOH HOH . 
D 4 HOH A 25 525 183 HOH HOH . 
D 4 HOH A 26 526 169 HOH HOH . 
D 4 HOH A 27 527 218 HOH HOH . 
D 4 HOH A 28 528 215 HOH HOH . 
D 4 HOH A 29 529 199 HOH HOH . 
D 4 HOH A 30 530 171 HOH HOH . 
D 4 HOH A 31 531 195 HOH HOH . 
D 4 HOH A 32 532 22 HOH HOH . 
D 4 HOH A 33 533 168 HOH HOH . 
D 4 HOH A 34 534 159 HOH HOH . 
D 4 HOH A 35 535 9 HOH HOH . 
D 4 HOH A 36 536 196 HOH HOH . 
D 4 HOH A 37 537 207 HOH HOH . 
D 4 HOH A 38 538 191 HOH HOH . 
D 4 HOH A 39 539 160 HOH HOH . 
D 4 HOH A 40 540 24 HOH HOH . 
D 4 HOH A 41 541 217 HOH HOH . 
D 4 HOH A 42 542 164 HOH HOH . 
D 4 HOH A 43 543 202 HOH HOH . 
D 4 HOH A 44 544 158 HOH HOH . 
D 4 HOH A 45 545 162 HOH HOH . 
D 4 HOH A 46 546 170 HOH HOH . 
D 4 HOH A 47 547 198 HOH HOH . 
D 4 HOH A 48 548 204 HOH HOH . 
D 4 HOH A 49 549 8 HOH HOH . 
D 4 HOH A 50 550 185 HOH HOH . 
D 4 HOH A 51 551 179 HOH HOH . 
D 4 HOH A 52 552 175 HOH HOH . 
D 4 HOH A 53 553 163 HOH HOH . 
D 4 HOH A 54 554 176 HOH HOH . 
D 4 HOH A 55 555 194 HOH HOH . 
D 4 HOH A 56 556 12 HOH HOH . 
D 4 HOH A 57 557 17 HOH HOH . 
D 4 HOH A 58 558 16 HOH HOH . 
D 4 HOH A 59 559 200 HOH HOH . 
D 4 HOH A 60 560 161 HOH HOH . 
D 4 HOH A 61 561 213 HOH HOH . 
D 4 HOH A 62 562 208 HOH HOH . 
D 4 HOH A 63 563 193 HOH HOH . 
D 4 HOH A 64 564 180 HOH HOH . 
D 4 HOH A 65 565 216 HOH HOH . 
D 4 HOH A 66 566 190 HOH HOH . 
D 4 HOH A 67 567 212 HOH HOH . 
D 4 HOH A 68 568 165 HOH HOH . 
D 4 HOH A 69 569 209 HOH HOH . 
D 4 HOH A 70 570 189 HOH HOH . 
D 4 HOH A 71 571 187 HOH HOH . 
D 4 HOH A 72 572 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A ACO . . . C 3 -0.066 31.323 7.685 1 65.27 ? N1A ACO 402 A 1 
HETATM 2 C C2A ACO . . . C 3 -0.709 32.46 7.983 1 67.59 ? C2A ACO 402 A 1 
HETATM 3 N N3A ACO . . . C 3 -2.021 32.664 8.114 1 71.3 ? N3A ACO 402 A 1 
HETATM 4 C C4A ACO . . . C 3 -2.723 31.528 7.897 1 70.54 ? C4A ACO 402 A 1 
HETATM 5 C C5A ACO . . . C 3 -2.201 30.282 7.601 1 62.66 ? C5A ACO 402 A 1 
HETATM 6 C C6A ACO . . . C 3 -0.803 30.191 7.495 1 60.28 ? C6A ACO 402 A 1 
HETATM 7 N N6A ACO . . . C 3 -0.193 29.044 7.219 1 52.82 ? N6A ACO 402 A 1 
HETATM 8 N N7A ACO . . . C 3 -3.215 29.343 7.434 1 52.32 ? N7A ACO 402 A 1 
HETATM 9 C C8A ACO . . . C 3 -4.327 30.01 7.652 1 57.76 ? C8A ACO 402 A 1 
HETATM 10 N N9A ACO . . . C 3 -4.088 31.352 7.949 1 67.76 ? N9A ACO 402 A 1 
HETATM 11 C C1B ACO . . . C 3 -5.102 32.409 8.17 1 70.43 ? C1B ACO 402 A 1 
HETATM 12 C C2B ACO . . . C 3 -6.059 32.523 6.981 1 76.18 ? C2B ACO 402 A 1 
HETATM 13 O O2B ACO . . . C 3 -5.517 33.17 5.838 1 58.8 ? O2B ACO 402 A 1 
HETATM 14 C C3B ACO . . . C 3 -7.249 33.199 7.683 1 79.49 ? C3B ACO 402 A 1 
HETATM 15 O O3B ACO . . . C 3 -7.049 34.588 7.932 1 94.05 ? O3B ACO 402 A 1 
HETATM 16 P P3B ACO . . . C 3 -7.682 35.485 6.753 1 100.79 ? P3B ACO 402 A 1 
HETATM 17 O O7A ACO . . . C 3 -9.185 35.22 6.701 1 80.94 ? O7A ACO 402 A 1 
HETATM 18 O O8A ACO . . . C 3 -6.989 35.051 5.461 1 94.38 ? O8A ACO 402 A 1 
HETATM 19 O O9A ACO . . . C 3 -7.328 36.91 7.201 1 94.67 ? O9A ACO 402 A 1 
HETATM 20 C C4B ACO . . . C 3 -7.295 32.469 9.029 1 75.74 ? C4B ACO 402 A 1 
HETATM 21 O O4B ACO . . . C 3 -5.912 32.097 9.289 1 70.81 ? O4B ACO 402 A 1 
HETATM 22 C C5B ACO . . . C 3 -8.206 31.257 9.083 1 69.27 ? C5B ACO 402 A 1 
HETATM 23 O O5B ACO . . . C 3 -7.73 30.24 8.139 1 73.99 ? O5B ACO 402 A 1 
HETATM 24 P P1A ACO . . . C 3 -8.673 29.455 7.088 1 66.82 ? P1A ACO 402 A 1 
HETATM 25 O O1A ACO . . . C 3 -9.782 30.353 6.642 1 63.59 ? O1A ACO 402 A 1 
HETATM 26 O O2A ACO . . . C 3 -7.844 28.779 6.044 1 66.3 ? O2A ACO 402 A 1 
HETATM 27 O O3A ACO . . . C 3 -9.254 28.332 8.09 1 64.02 ? O3A ACO 402 A 1 
HETATM 28 P P2A ACO . . . C 3 -10.286 27.104 8.024 1 50.59 ? P2A ACO 402 A 1 
HETATM 29 O O4A ACO . . . C 3 -10.435 26.615 6.615 1 51.4 ? O4A ACO 402 A 1 
HETATM 30 O O5A ACO . . . C 3 -11.521 27.364 8.871 1 46.7 ? O5A ACO 402 A 1 
HETATM 31 O O6A ACO . . . C 3 -9.32 25.972 8.654 1 59.55 ? O6A ACO 402 A 1 
HETATM 32 C CBP ACO . . . C 3 -7.337 24.529 8.66 1 52.15 ? CBP ACO 402 A 1 
HETATM 33 C CCP ACO . . . C 3 -8.086 25.652 7.944 1 51.87 ? CCP ACO 402 A 1 
HETATM 34 C CDP ACO . . . C 3 -8.256 23.302 8.782 1 49.34 ? CDP ACO 402 A 1 
HETATM 35 C CEP ACO . . . C 3 -6.156 24.147 7.748 1 50.58 ? CEP ACO 402 A 1 
HETATM 36 C CAP ACO . . . C 3 -6.85 24.962 10.069 1 44.39 ? CAP ACO 402 A 1 
HETATM 37 O OAP ACO . . . C 3 -7.913 25.103 11.037 1 37.12 ? OAP ACO 402 A 1 
HETATM 38 C C9P ACO . . . C 3 -5.832 23.968 10.605 1 42.52 ? C9P ACO 402 A 1 
HETATM 39 O O9P ACO . . . C 3 -4.654 24.016 10.238 1 37.81 ? O9P ACO 402 A 1 
HETATM 40 N N8P ACO . . . C 3 -6.335 22.994 11.356 1 43.36 ? N8P ACO 402 A 1 
HETATM 41 C C7P ACO . . . C 3 -5.553 22.044 12.123 1 38.55 ? C7P ACO 402 A 1 
HETATM 42 C C6P ACO . . . C 3 -5.298 22.606 13.451 1 38.55 ? C6P ACO 402 A 1 
HETATM 43 C C5P ACO . . . C 3 -4.108 21.991 14.142 1 40.42 ? C5P ACO 402 A 1 
HETATM 44 O O5P ACO . . . C 3 -3.054 21.733 13.552 1 35.06 ? O5P ACO 402 A 1 
HETATM 45 N N4P ACO . . . C 3 -4.314 21.773 15.437 1 41.59 ? N4P ACO 402 A 1 
HETATM 46 C C3P ACO . . . C 3 -3.283 21.294 16.304 1 47.61 ? C3P ACO 402 A 1 
HETATM 47 C C2P ACO . . . C 3 -2.326 22.377 16.67 1 59.1 ? C2P ACO 402 A 1 
HETATM 48 S S1P ACO . . . C 3 -1.694 21.813 18.255 1 57.66 ? S1P ACO 402 A 1 
HETATM 49 C C ACO . . . C 3 -0.946 20.188 18.238 1 60.09 ? C ACO 402 A 1 
HETATM 50 O O ACO . . . C 3 -1.196 19.117 18.756 1 47.74 ? O ACO 402 A 1 
HETATM 51 C CH3 ACO . . . C 3 0.399 20.525 17.782 1 72.44 ? CH3 ACO 402 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           51 
#