data_8I51
#
_model_server_result.job_id            nvpjOAmG8MMK2eF5HHTj1A 
_model_server_result.datetime_utc      '2024-10-25 20:30:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i51 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":602}' 
#
_entry.id    8I51 
#
_exptl.entry_id    8I51 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I51 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I51 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
? 3 N N N 
? 3 Q N N 
? 3 T N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 H O3P AMP . A AMP 602 1_555 I CBC OP3 . A OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? 
covale ? covale2 K O1P AMP . B AMP 602 1_555 L CBC OP3 . B OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? 
covale ? covale3 N O3P AMP . C AMP 602 1_555 O CBC OP3 . C OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? 
covale ? covale4 Q O1P AMP . D AMP 602 1_555 R CBC OP3 . D OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? 
covale ? covale5 T O3P AMP . E AMP 602 1_555 U CBC OP3 . E OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? 
covale ? covale6 W O1P AMP . F AMP 602 1_555 X CBC OP3 . F OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? 
metalc ? metalc1 A OE1 GLU 322 A GLU 322 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc2 G MG MG . A MG 601 1_555 H O1P AMP . A AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc3 B OE1 GLU 322 B GLU 322 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc4 J MG MG . B MG 601 1_555 K O3P AMP . B AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc5 C OE1 GLU 322 C GLU 322 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc6 M MG MG . C MG 601 1_555 N O1P AMP . C AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc7 D OE1 GLU 322 D GLU 322 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc8 P MG MG . D MG 601 1_555 Q O3P AMP . D AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc9 E OE1 GLU 322 E GLU 322 1_555 S MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc10 S MG MG . E MG 601 1_555 T O1P AMP . E AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc11 F OE1 GLU 322 F GLU 322 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc12 V MG MG . F MG 601 1_555 W O3P AMP . F AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     8I51 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 MG A 1 601 1103 MG MG . 
H 3 AMP A 1 602 2002 AMP AMP . 
I 4 OP3 A 1 603 2001 OP3 MC7 . 
J 2 MG B 1 601 1103 MG MG . 
K 3 AMP B 1 602 2002 AMP AMP . 
L 4 OP3 B 1 603 2001 OP3 MC7 . 
M 2 MG C 1 601 1103 MG MG . 
N 3 AMP C 1 602 2002 AMP AMP . 
O 4 OP3 C 1 603 2001 OP3 MC7 . 
P 2 MG D 1 601 1103 MG MG . 
Q 3 AMP D 1 602 2002 AMP AMP . 
R 4 OP3 D 1 603 2001 OP3 MC7 . 
S 2 MG E 1 601 1103 MG MG . 
T 3 AMP E 1 602 2002 AMP AMP . 
U 4 OP3 E 1 603 2001 OP3 MC7 . 
V 2 MG F 1 601 1103 MG MG . 
W 3 AMP F 1 602 2002 AMP AMP . 
X 4 OP3 F 1 603 2001 OP3 MC7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . W 3 181.577 123.809 168.291 1 68.07 ? P AMP 602 F 1 
HETATM 2 O O1P AMP . . . W 3 182.338 124.551 167.253 1 66.02 ? O1P AMP 602 F 1 
HETATM 3 O O2P AMP . . . W 3 181.102 122.458 167.847 1 57.19 -1 O2P AMP 602 F 1 
HETATM 4 O O3P AMP . . . W 3 180.565 124.676 168.984 1 58.05 ? O3P AMP 602 F 1 
HETATM 5 O O5' AMP . . . W 3 182.673 123.463 169.402 1 59.38 ? O5' AMP 602 F 1 
HETATM 6 C C5' AMP . . . W 3 182.46 123.915 170.726 1 55.99 ? C5' AMP 602 F 1 
HETATM 7 C C4' AMP . . . W 3 183.266 123.131 171.735 1 55.76 ? C4' AMP 602 F 1 
HETATM 8 O O4' AMP . . . W 3 184.523 122.656 171.274 1 56.41 ? O4' AMP 602 F 1 
HETATM 9 C C3' AMP . . . W 3 183.701 124.036 172.835 1 61.05 ? C3' AMP 602 F 1 
HETATM 10 O O3' AMP . . . W 3 182.636 124.295 173.724 1 62.17 ? O3' AMP 602 F 1 
HETATM 11 C C2' AMP . . . W 3 184.753 123.218 173.518 1 58.65 ? C2' AMP 602 F 1 
HETATM 12 O O2' AMP . . . W 3 184.211 122.441 174.582 1 58.29 ? O2' AMP 602 F 1 
HETATM 13 C C1' AMP . . . W 3 185.285 122.331 172.427 1 59.71 ? C1' AMP 602 F 1 
HETATM 14 N N9 AMP . . . W 3 186.711 122.651 172.263 1 57.92 ? N9 AMP 602 F 1 
HETATM 15 C C8 AMP . . . W 3 187.27 123.287 171.23 1 57.44 ? C8 AMP 602 F 1 
HETATM 16 N N7 AMP . . . W 3 188.603 123.394 171.409 1 57.11 ? N7 AMP 602 F 1 
HETATM 17 C C5 AMP . . . W 3 188.901 122.836 172.591 1 55.82 ? C5 AMP 602 F 1 
HETATM 18 C C6 AMP . . . W 3 190.113 122.643 173.4 1 59.37 ? C6 AMP 602 F 1 
HETATM 19 N N6 AMP . . . W 3 191.332 123.047 172.968 1 55.6 ? N6 AMP 602 F 1 
HETATM 20 N N1 AMP . . . W 3 189.976 122.018 174.586 1 61.76 ? N1 AMP 602 F 1 
HETATM 21 C C2 AMP . . . W 3 188.791 121.59 175.023 1 59.76 ? C2 AMP 602 F 1 
HETATM 22 N N3 AMP . . . W 3 187.658 121.74 174.344 1 55.45 ? N3 AMP 602 F 1 
HETATM 23 C C4 AMP . . . W 3 187.647 122.356 173.149 1 53.81 ? C4 AMP 602 F 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           23 
#