data_8I51 # _model_server_result.job_id UPc7K3dCS41rUvtlWs0c3Q _model_server_result.datetime_utc '2024-12-01 04:07:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":603}' # _entry.id 8I51 # _exptl.entry_id 8I51 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 174.194 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-methoxy-7-oxidanylidene-heptanoic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I51 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 L N N ? 4 O N N ? 4 R N N ? 4 U N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H O3P AMP . A AMP 602 1_555 I CBC OP3 . A OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale2 K O1P AMP . B AMP 602 1_555 L CBC OP3 . B OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale3 N O3P AMP . C AMP 602 1_555 O CBC OP3 . C OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale4 Q O1P AMP . D AMP 602 1_555 R CBC OP3 . D OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale5 T O3P AMP . E AMP 602 1_555 U CBC OP3 . E OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale6 W O1P AMP . F AMP 602 1_555 X CBC OP3 . F OP3 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? metalc ? metalc1 A OE1 GLU 322 A GLU 322 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc2 G MG MG . A MG 601 1_555 H O1P AMP . A AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc3 B OE1 GLU 322 B GLU 322 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc4 J MG MG . B MG 601 1_555 K O3P AMP . B AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc5 C OE1 GLU 322 C GLU 322 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc6 M MG MG . C MG 601 1_555 N O1P AMP . C AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc7 D OE1 GLU 322 D GLU 322 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc8 P MG MG . D MG 601 1_555 Q O3P AMP . D AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc9 E OE1 GLU 322 E GLU 322 1_555 S MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc10 S MG MG . E MG 601 1_555 T O1P AMP . E AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc11 F OE1 GLU 322 F GLU 322 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc12 V MG MG . F MG 601 1_555 W O3P AMP . F AMP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C8 H14 O4' _chem_comp.formula_weight 174.194 _chem_comp.id OP3 _chem_comp.mon_nstd_flag . _chem_comp.name '7-methoxy-7-oxidanylidene-heptanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 CBC OP3 doub 274 n n CBC CAT OP3 sing 275 n n OAE CBB OP3 doub 276 n n CAN CAT OP3 sing 277 n n CAN CAL OP3 sing 278 n n CAM CAL OP3 sing 279 n n CAM CAR OP3 sing 280 n n CAA OAX OP3 sing 281 n n CBB CAR OP3 sing 282 n n CBB OAX OP3 sing 283 n n CBC O1 OP3 sing 284 n n CAA H1 OP3 sing 285 n n CAA H2 OP3 sing 286 n n CAA H3 OP3 sing 287 n n CAL H4 OP3 sing 288 n n CAL H5 OP3 sing 289 n n CAM H6 OP3 sing 290 n n CAM H7 OP3 sing 291 n n CAN H8 OP3 sing 292 n n CAN H9 OP3 sing 293 n n CAR H10 OP3 sing 294 n n CAR H11 OP3 sing 295 n n CAT H12 OP3 sing 296 n n CAT H13 OP3 sing 297 n n O1 H14 OP3 sing 298 n n # _atom_sites.entry_id 8I51 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MG A 1 601 1103 MG MG . H 3 AMP A 1 602 2002 AMP AMP . I 4 OP3 A 1 603 2001 OP3 MC7 . J 2 MG B 1 601 1103 MG MG . K 3 AMP B 1 602 2002 AMP AMP . L 4 OP3 B 1 603 2001 OP3 MC7 . M 2 MG C 1 601 1103 MG MG . N 3 AMP C 1 602 2002 AMP AMP . O 4 OP3 C 1 603 2001 OP3 MC7 . P 2 MG D 1 601 1103 MG MG . Q 3 AMP D 1 602 2002 AMP AMP . R 4 OP3 D 1 603 2001 OP3 MC7 . S 2 MG E 1 601 1103 MG MG . T 3 AMP E 1 602 2002 AMP AMP . U 4 OP3 E 1 603 2001 OP3 MC7 . V 2 MG F 1 601 1103 MG MG . W 3 AMP F 1 602 2002 AMP AMP . X 4 OP3 F 1 603 2001 OP3 MC7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA OP3 . . . R 4 176.965 206.256 166.506 1 47.89 ? CAA OP3 603 D 1 HETATM 2 C CAL OP3 . . . R 4 181.312 201.847 166.457 1 49.18 ? CAL OP3 603 D 1 HETATM 3 C CAM OP3 . . . R 4 180.744 203.234 166.737 1 47.22 ? CAM OP3 603 D 1 HETATM 4 C CAN OP3 . . . R 4 182.753 201.702 166.942 1 47.91 ? CAN OP3 603 D 1 HETATM 5 C CAR OP3 . . . R 4 179.324 203.396 166.204 1 47.59 ? CAR OP3 603 D 1 HETATM 6 C CAT OP3 . . . R 4 183.294 200.293 166.711 1 51.89 ? CAT OP3 603 D 1 HETATM 7 O OAE OP3 . . . R 4 179.445 205.588 167.037 1 48.94 ? OAE OP3 603 D 1 HETATM 8 O OAX OP3 . . . R 4 177.599 205.214 165.825 1 55.64 ? OAX OP3 603 D 1 HETATM 9 C CBB OP3 . . . R 4 178.813 204.819 166.398 1 51.14 ? CBB OP3 603 D 1 HETATM 10 C CBC OP3 . . . R 4 184.729 200.123 167.205 1 57.21 ? CBC OP3 603 D 1 HETATM 11 O O25 OP3 . . . R 4 185.177 201.345 167.721 1 54.02 ? O25 OP3 603 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #