data_8I57
#
_model_server_result.job_id            GiA2vxeWAwEvAPyGTihxHw 
_model_server_result.datetime_utc      '2024-11-16 05:40:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8I57 
#
_exptl.entry_id    8I57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              830.747 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I57 
_cell.length_a            68.22 
_cell.length_b            68.22 
_cell.length_c            82.65 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H38 N4 O16' 
_chem_comp.formula_weight    830.747 
_chem_comp.id                UP3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C63 O2R UP3 sing 315 n n 
O2R HO2R UP3 sing 316 n n 
C62 C63 UP3 sing 317 n n 
O1R C63 UP3 doub 318 n n 
C61 C62 UP3 sing 319 n n 
C62 H62 UP3 sing 320 n n 
C62 H62A UP3 sing 321 n n 
C18 C61 UP3 sing 322 n n 
C61 H61 UP3 sing 323 n n 
C61 H61A UP3 sing 324 n n 
C19 C18 UP3 sing 325 n y 
C18 C17 UP3 doub 326 n y 
C20 C19 UP3 sing 327 n y 
N24 C19 UP3 doub 328 n y 
N24 C16 UP3 sing 329 n y 
C20 C1 UP3 doub 330 n y 
C20 H20 UP3 sing 331 n n 
C2 C1 UP3 sing 332 n y 
C1 N21 UP3 sing 333 n y 
C16 C17 UP3 sing 334 n y 
C17 C86 UP3 sing 335 n n 
C86 C87 UP3 sing 336 n n 
C86 H86 UP3 sing 337 n n 
C86 H86A UP3 sing 338 n n 
C87 O2Q UP3 doub 339 n n 
C87 O1Q UP3 sing 340 n n 
O1Q HO1Q UP3 sing 341 n n 
C16 C15 UP3 doub 342 n y 
C14 C15 UP3 sing 343 n y 
C15 H15 UP3 sing 344 n n 
C13 C14 UP3 doub 345 n y 
C14 N23 UP3 sing 346 n y 
C11 N23 UP3 sing 347 n y 
N23 HN23 UP3 sing 348 n n 
C51 C13 UP3 sing 349 n n 
C12 C13 UP3 sing 350 n y 
C52 C51 UP3 sing 351 n n 
C51 H51 UP3 sing 352 n n 
C51 H51A UP3 sing 353 n n 
C53 C52 UP3 sing 354 n n 
C52 H52 UP3 sing 355 n n 
C52 H52A UP3 sing 356 n n 
O2M C53 UP3 doub 357 n n 
C53 O1M UP3 sing 358 n n 
O1M HO1M UP3 sing 359 n n 
C81 C12 UP3 sing 360 n n 
C12 C11 UP3 doub 361 n y 
C82 C81 UP3 sing 362 n n 
C81 H81 UP3 sing 363 n n 
C81 H81A UP3 sing 364 n n 
O1L C82 UP3 doub 365 n n 
C82 O2L UP3 sing 366 n n 
O2L HO2L UP3 sing 367 n n 
C11 C10 UP3 sing 368 n y 
C10 C6 UP3 doub 369 n y 
C10 H10 UP3 sing 370 n n 
N22 C6 UP3 sing 371 n y 
C6 C7 UP3 sing 372 n y 
N22 C9 UP3 doub 373 n y 
C7 C8 UP3 doub 374 n y 
C7 C7A UP3 sing 375 n n 
C7A C7B UP3 sing 376 n n 
C7A H7A UP3 sing 377 n n 
C7A H7AA UP3 sing 378 n n 
O17 C7B UP3 doub 379 n n 
C7B O27 UP3 sing 380 n n 
O27 HO27 UP3 sing 381 n n 
C9 C8 UP3 sing 382 n y 
C8 C41 UP3 sing 383 n n 
C41 C42 UP3 sing 384 n n 
C41 H41 UP3 sing 385 n n 
C41 H41A UP3 sing 386 n n 
C42 C43 UP3 sing 387 n n 
C42 H42 UP3 sing 388 n n 
C42 H42A UP3 sing 389 n n 
C43 O18 UP3 doub 390 n n 
C43 O28 UP3 sing 391 n n 
O28 HO28 UP3 sing 392 n n 
C5 C9 UP3 sing 393 n y 
C4 C5 UP3 doub 394 n y 
C5 H5 UP3 sing 395 n n 
C3 C4 UP3 sing 396 n y 
C4 N21 UP3 sing 397 n y 
N21 HN21 UP3 sing 398 n n 
C31 C3 UP3 sing 399 n n 
C2 C3 UP3 doub 400 n y 
C2A C2 UP3 sing 401 n n 
C2B C2A UP3 sing 402 n n 
C2A H2A UP3 sing 403 n n 
C2A H2AA UP3 sing 404 n n 
O12 C2B UP3 doub 405 n n 
C2B O22 UP3 sing 406 n n 
O22 HO22 UP3 sing 407 n n 
C32 C31 UP3 sing 408 n n 
C31 H31 UP3 sing 409 n n 
C31 H31A UP3 sing 410 n n 
C33 C32 UP3 sing 411 n n 
C32 H32 UP3 sing 412 n n 
C32 H32A UP3 sing 413 n n 
O13 C33 UP3 doub 414 n n 
C33 O23 UP3 sing 415 n n 
O23 HO23 UP3 sing 416 n n 
#
_atom_sites.entry_id                     8I57 
_atom_sites.fract_transf_matrix[1][1]    0.014658 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014658 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012099 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           UP3 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      201 
_pdbx_nonpoly_scheme.auth_seq_num     201 
_pdbx_nonpoly_scheme.pdb_mon_id       UP3 
_pdbx_nonpoly_scheme.auth_mon_id      DRG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2R UP3 . . . C 2 8.703 32.368 -0.544 0.81 119.76 ? O2R UP3 201 B 1 
HETATM 2 C C63 UP3 . . . C 2 8.225 33.161 -1.385 0.81 122.85 ? C63 UP3 201 B 1 
HETATM 3 O O1R UP3 . . . C 2 7.941 34.363 -1.16 0.81 123.74 ? O1R UP3 201 B 1 
HETATM 4 C C62 UP3 . . . C 2 7.905 32.626 -2.808 0.81 121.11 ? C62 UP3 201 B 1 
HETATM 5 C C61 UP3 . . . C 2 8.101 31.091 -3.024 0.81 120.92 ? C61 UP3 201 B 1 
HETATM 6 C C18 UP3 . . . C 2 7.261 30.274 -2.044 0.81 124.27 ? C18 UP3 201 B 1 
HETATM 7 C C19 UP3 . . . C 2 7.753 29.183 -1.467 0.81 120.51 ? C19 UP3 201 B 1 
HETATM 8 N N24 UP3 . . . C 2 6.819 28.668 -0.702 0.81 119.62 ? N24 UP3 201 B 1 
HETATM 9 C C20 UP3 . . . C 2 9.04 28.855 -1.503 0.81 116.3 ? C20 UP3 201 B 1 
HETATM 10 C C1 UP3 . . . C 2 9.563 27.783 -0.955 0.81 115.11 ? C1 UP3 201 B 1 
HETATM 11 C C17 UP3 . . . C 2 5.963 30.301 -1.802 0.81 124.42 ? C17 UP3 201 B 1 
HETATM 12 C C86 UP3 . . . C 2 4.941 31.278 -2.417 0.81 125.4 ? C86 UP3 201 B 1 
HETATM 13 C C87 UP3 . . . C 2 4.493 32.475 -1.645 0.81 128.55 ? C87 UP3 201 B 1 
HETATM 14 O O1Q UP3 . . . C 2 4.466 32.36 -0.408 0.81 124.59 ? O1Q UP3 201 B 1 
HETATM 15 O O2Q UP3 . . . C 2 4.128 33.459 -2.329 0.81 131.25 ? O2Q UP3 201 B 1 
HETATM 16 C C16 UP3 . . . C 2 5.667 29.248 -1.051 0.81 123.95 ? C16 UP3 201 B 1 
HETATM 17 C C15 UP3 . . . C 2 4.612 29.173 -0.325 0.81 126.24 ? C15 UP3 201 B 1 
HETATM 18 C C14 UP3 . . . C 2 4.7 28.487 0.803 0.81 125.83 ? C14 UP3 201 B 1 
HETATM 19 N N23 UP3 . . . C 2 5.275 27.232 0.75 0.81 119.12 ? N23 UP3 201 B 1 
HETATM 20 C C13 UP3 . . . C 2 3.871 28.226 1.721 0.81 126.32 ? C13 UP3 201 B 1 
HETATM 21 C C51 UP3 . . . C 2 3.191 29.492 2.146 0.81 123.11 ? C51 UP3 201 B 1 
HETATM 22 C C52 UP3 . . . C 2 4.284 30.188 3.129 0.81 120.58 ? C52 UP3 201 B 1 
HETATM 23 C C53 UP3 . . . C 2 5.801 30.487 2.69 0.81 124.02 ? C53 UP3 201 B 1 
HETATM 24 O O2M UP3 . . . C 2 6.064 31.407 1.878 0.81 122.6 ? O2M UP3 201 B 1 
HETATM 25 O O1M UP3 . . . C 2 6.69 29.783 3.239 0.81 121.07 ? O1M UP3 201 B 1 
HETATM 26 C C12 UP3 . . . C 2 4.164 27.217 2.471 0.81 123.97 ? C12 UP3 201 B 1 
HETATM 27 C C81 UP3 . . . C 2 3.736 26.917 3.886 0.81 123.7 ? C81 UP3 201 B 1 
HETATM 28 C C82 UP3 . . . C 2 2.436 26.199 4.01 0.81 123.13 ? C82 UP3 201 B 1 
HETATM 29 O O1L UP3 . . . C 2 2.489 25.011 4.398 0.81 115.72 ? O1L UP3 201 B 1 
HETATM 30 O O2L UP3 . . . C 2 1.421 26.879 3.772 0.81 124.3 ? O2L UP3 201 B 1 
HETATM 31 C C11 UP3 . . . C 2 5.099 26.576 1.92 0.81 118.51 ? C11 UP3 201 B 1 
HETATM 32 C C10 UP3 . . . C 2 5.497 25.414 2.412 0.81 112.92 ? C10 UP3 201 B 1 
HETATM 33 C C6 UP3 . . . C 2 6.405 24.577 2.054 0.81 111.51 ? C6 UP3 201 B 1 
HETATM 34 N N22 UP3 . . . C 2 7.372 25.16 1.364 0.81 112.41 ? N22 UP3 201 B 1 
HETATM 35 C C7 UP3 . . . C 2 6.844 23.404 2.507 0.81 107.71 ? C7 UP3 201 B 1 
HETATM 36 C C7A UP3 . . . C 2 6.097 22.406 3.43 0.81 101.58 ? C7A UP3 201 B 1 
HETATM 37 C C7B UP3 . . . C 2 4.67 22.041 2.924 0.81 99.56 ? C7B UP3 201 B 1 
HETATM 38 O O17 UP3 . . . C 2 4.522 21.728 1.718 0.81 97.52 ? O17 UP3 201 B 1 
HETATM 39 O O27 UP3 . . . C 2 3.75 22.069 3.77 0.81 98.72 ? O27 UP3 201 B 1 
HETATM 40 C C8 UP3 . . . C 2 8.046 23.226 1.959 0.81 104.39 ? C8 UP3 201 B 1 
HETATM 41 C C41 UP3 . . . C 2 8.973 22.02 2.146 0.81 92.78 ? C41 UP3 201 B 1 
HETATM 42 C C42 UP3 . . . C 2 9.176 20.99 1.071 0.81 87.38 ? C42 UP3 201 B 1 
HETATM 43 C C43 UP3 . . . C 2 10.259 20.026 1.612 0.81 78.08 ? C43 UP3 201 B 1 
HETATM 44 O O28 UP3 . . . C 2 10.167 19.614 2.796 0.81 69.71 ? O28 UP3 201 B 1 
HETATM 45 O O18 UP3 . . . C 2 11.202 19.772 0.825 0.81 71.71 ? O18 UP3 201 B 1 
HETATM 46 C C9 UP3 . . . C 2 8.377 24.315 1.251 0.81 110.81 ? C9 UP3 201 B 1 
HETATM 47 C C5 UP3 . . . C 2 9.443 24.626 0.502 0.81 111.14 ? C5 UP3 201 B 1 
HETATM 48 C C4 UP3 . . . C 2 9.713 25.75 -0.189 0.81 109.07 ? C4 UP3 201 B 1 
HETATM 49 N N21 UP3 . . . C 2 8.908 26.827 -0.276 0.81 111.86 ? N21 UP3 201 B 1 
HETATM 50 C C3 UP3 . . . C 2 10.789 26.015 -0.922 0.81 103.03 ? C3 UP3 201 B 1 
HETATM 51 C C2 UP3 . . . C 2 10.643 27.211 -1.468 0.81 109.09 ? C2 UP3 201 B 1 
HETATM 52 C C2A UP3 . . . C 2 11.637 27.89 -2.437 0.81 102.7 ? C2A UP3 201 B 1 
HETATM 53 C C2B UP3 . . . C 2 12.103 29.29 -2.003 0.81 99.65 ? C2B UP3 201 B 1 
HETATM 54 O O12 UP3 . . . C 2 12.811 29.347 -0.978 0.81 97.98 ? O12 UP3 201 B 1 
HETATM 55 O O22 UP3 . . . C 2 11.775 30.262 -2.725 0.81 97.58 ? O22 UP3 201 B 1 
HETATM 56 C C31 UP3 . . . C 2 11.886 24.955 -1.132 0.81 95.81 ? C31 UP3 201 B 1 
HETATM 57 C C32 UP3 . . . C 2 12.875 24.864 0.013 0.81 89.92 ? C32 UP3 201 B 1 
HETATM 58 C C33 UP3 . . . C 2 13.835 23.664 -0.139 0.81 80.34 ? C33 UP3 201 B 1 
HETATM 59 O O13 UP3 . . . C 2 13.893 22.931 0.879 0.81 72.72 ? O13 UP3 201 B 1 
HETATM 60 O O23 UP3 . . . C 2 14.432 23.456 -1.223 0.81 71.3 ? O23 UP3 201 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           60 
#