data_8I5B # _model_server_result.job_id MH4pnEU3FgOdBnyqfqmkdQ _model_server_result.datetime_utc '2024-11-21 14:06:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2005}' # _entry.id 8I5B # _exptl.entry_id 8I5B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I5B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2007 NAG 4 n D NAG 2 D 2 NAG A 2008 NAG 4 n E NAG 1 E 1 NAG A 2009 NAG 4 n E NAG 2 E 2 NAG F 2004 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 315 A CYS 275 1_555 A SG CYS 364 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 355 A CYS 315 1_555 A SG CYS 370 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 935 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 937 A CYS 897 1_555 A SG CYS 943 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 975 A CYS 935 1_555 A SG CYS 984 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 1390 A CYS 1350 1_555 A SG CYS 1410 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf7 A SG CYS 1755 A CYS 1715 1_555 A SG CYS 1770 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 323 A ASN 283 1_555 G C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 1392 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 1406 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 1415 A ASN 1375 1_555 F C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 AA C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 BA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 CA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 DA C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 C ND2 ASN 66 C ASN 66 1_555 EA C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 817 n n CBA CAB Y01 sing 818 n n CBA CAN Y01 sing 819 n n CAN CAJ Y01 sing 820 n n CAJ CAO Y01 sing 821 n n CAO CBB Y01 sing 822 n n CBB CAC Y01 sing 823 n n CBB CBE Y01 sing 824 n n CBE CAP Y01 sing 825 n n CBE CBI Y01 sing 826 n n CAP CAQ Y01 sing 827 n n CAQ CBG Y01 sing 828 n n CBG CBI Y01 sing 829 n n CBG CBD Y01 sing 830 n n CBI CAE Y01 sing 831 n n CBI CAU Y01 sing 832 n n CAU CAS Y01 sing 833 n n CAS CBF Y01 sing 834 n n CBF CBD Y01 sing 835 n n CBF CBH Y01 sing 836 n n CBD CAK Y01 sing 837 n n CAK CAI Y01 sing 838 n n CAI CAZ Y01 doub 839 n n CAZ CAV Y01 sing 840 n n CAZ CBH Y01 sing 841 n n CAV CBC Y01 sing 842 n n CBH CAD Y01 sing 843 n n CBH CAT Y01 sing 844 n n CAT CAR Y01 sing 845 n n CAR CBC Y01 sing 846 n n CBC OAW Y01 sing 847 n n OAW CAY Y01 sing 848 n n CAY OAG Y01 doub 849 n n CAY CAM Y01 sing 850 n n CAM CAL Y01 sing 851 n n CAL CAX Y01 sing 852 n n CAX OAH Y01 sing 853 n n CAX OAF Y01 doub 854 n n CAA HAA1 Y01 sing 855 n n CAA HAA2 Y01 sing 856 n n CAA HAA3 Y01 sing 857 n n CBA HBA Y01 sing 858 n n CAB HAB1 Y01 sing 859 n n CAB HAB2 Y01 sing 860 n n CAB HAB3 Y01 sing 861 n n CAN HAN1 Y01 sing 862 n n CAN HAN2 Y01 sing 863 n n CAJ HAJ1 Y01 sing 864 n n CAJ HAJ2 Y01 sing 865 n n CAO HAO1 Y01 sing 866 n n CAO HAO2 Y01 sing 867 n n CBB HBB Y01 sing 868 n n CAC HAC1 Y01 sing 869 n n CAC HAC2 Y01 sing 870 n n CAC HAC3 Y01 sing 871 n n CBE HBE Y01 sing 872 n n CAP HAP1 Y01 sing 873 n n CAP HAP2 Y01 sing 874 n n CAQ HAQ1 Y01 sing 875 n n CAQ HAQ2 Y01 sing 876 n n CBG HBG Y01 sing 877 n n CBD HBD Y01 sing 878 n n CAE HAE1 Y01 sing 879 n n CAE HAE2 Y01 sing 880 n n CAE HAE3 Y01 sing 881 n n CAU HAU1 Y01 sing 882 n n CAU HAU2 Y01 sing 883 n n CAS HAS1 Y01 sing 884 n n CAS HAS2 Y01 sing 885 n n CBF HBF Y01 sing 886 n n CAK HAK1 Y01 sing 887 n n CAK HAK2 Y01 sing 888 n n CAI HAI Y01 sing 889 n n CAV HAV1 Y01 sing 890 n n CAV HAV2 Y01 sing 891 n n CBC HBC Y01 sing 892 n n CAD HAD1 Y01 sing 893 n n CAD HAD2 Y01 sing 894 n n CAD HAD3 Y01 sing 895 n n CAT HAT1 Y01 sing 896 n n CAT HAT2 Y01 sing 897 n n CAR HAR1 Y01 sing 898 n n CAR HAR2 Y01 sing 899 n n CAM HAM1 Y01 sing 900 n n CAM HAM2 Y01 sing 901 n n CAL HAL1 Y01 sing 902 n n CAL HAL2 Y01 sing 903 n n OAH HAH Y01 sing 904 n n # _atom_sites.entry_id 8I5B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 2001 2005 NAG NAG . G 5 NAG A 1 2002 2006 NAG NAG . H 6 P5S A 1 2003 2012 P5S P5S . I 7 Y01 A 1 2004 2015 Y01 Y01 . J 7 Y01 A 1 2005 2016 Y01 Y01 . K 7 Y01 A 1 2006 2017 Y01 Y01 . L 7 Y01 A 1 2007 2018 Y01 Y01 . M 7 Y01 A 1 2008 2020 Y01 Y01 . N 7 Y01 A 1 2009 2007 Y01 Y01 . O 8 LPE A 1 2010 2010 LPE LPE . P 9 PCW A 1 2011 2013 PCW PCW . Q 8 LPE A 1 2012 2015 LPE LPE . R 9 PCW A 1 2013 2016 PCW PCW . S 9 PCW A 1 2014 2018 PCW PCW . T 8 LPE A 1 2015 2020 LPE LPE . U 8 LPE A 1 2016 2021 LPE LPE . V 8 LPE A 1 2017 2023 LPE LPE . W 8 LPE A 1 2018 2024 LPE LPE . X 9 PCW A 1 2019 2035 PCW PCW . Y 9 PCW A 1 2020 2036 PCW PCW . Z 10 OJ0 A 1 2021 1 OJ0 LIG . AA 5 NAG B 1 301 301 NAG NAG . BA 5 NAG B 1 302 302 NAG NAG . CA 5 NAG B 1 303 303 NAG NAG . DA 5 NAG B 1 304 304 NAG NAG . EA 5 NAG C 1 301 301 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 7 125.816 74.502 119.738 1 130.17 ? CAA Y01 2005 A 1 HETATM 2 C CBA Y01 . . . J 7 124.497 75.228 119.953 1 131.54 ? CBA Y01 2005 A 1 HETATM 3 C CAB Y01 . . . J 7 124.24 75.439 121.437 1 129.54 ? CAB Y01 2005 A 1 HETATM 4 C CAN Y01 . . . J 7 124.455 76.549 119.184 1 131.38 ? CAN Y01 2005 A 1 HETATM 5 C CAJ Y01 . . . J 7 124.589 76.431 117.687 1 130.69 ? CAJ Y01 2005 A 1 HETATM 6 C CAO Y01 . . . J 7 124.576 77.762 116.974 1 129.69 ? CAO Y01 2005 A 1 HETATM 7 C CBB Y01 . . . J 7 124.74 77.677 115.449 1 130.14 ? CBB Y01 2005 A 1 HETATM 8 C CAC Y01 . . . J 7 123.572 76.908 114.838 1 128.92 ? CAC Y01 2005 A 1 HETATM 9 C CBE Y01 . . . J 7 124.93 79.081 114.843 1 131.19 ? CBE Y01 2005 A 1 HETATM 10 C CAP Y01 . . . J 7 125.908 79.955 115.676 1 130.46 ? CAP Y01 2005 A 1 HETATM 11 C CAQ Y01 . . . J 7 126.614 80.905 114.689 1 129.82 ? CAQ Y01 2005 A 1 HETATM 12 C CBG Y01 . . . J 7 125.824 80.734 113.395 1 131.98 ? CBG Y01 2005 A 1 HETATM 13 C CBI Y01 . . . J 7 125.466 79.234 113.388 1 132.87 ? CBI Y01 2005 A 1 HETATM 14 C CAE Y01 . . . J 7 126.707 78.346 113.191 1 130.2 ? CAE Y01 2005 A 1 HETATM 15 C CAU Y01 . . . J 7 124.459 79.028 112.252 1 130.17 ? CAU Y01 2005 A 1 HETATM 16 C CAS Y01 . . . J 7 125.04 79.477 110.907 1 130.36 ? CAS Y01 2005 A 1 HETATM 17 C CBF Y01 . . . J 7 125.495 80.945 110.912 1 132.21 ? CBF Y01 2005 A 1 HETATM 18 C CBD Y01 . . . J 7 126.429 81.254 112.097 1 131.88 ? CBD Y01 2005 A 1 HETATM 19 C CAK Y01 . . . J 7 126.675 82.758 112.179 1 128.83 ? CAK Y01 2005 A 1 HETATM 20 C CAI Y01 . . . J 7 126.914 83.376 110.838 1 129.32 ? CAI Y01 2005 A 1 HETATM 21 C CAZ Y01 . . . J 7 126.745 82.76 109.677 1 131.9 ? CAZ Y01 2005 A 1 HETATM 22 C CAV Y01 . . . J 7 127.149 83.423 108.376 1 129.95 ? CAV Y01 2005 A 1 HETATM 23 C CBH Y01 . . . J 7 126.111 81.378 109.551 1 133.61 ? CBH Y01 2005 A 1 HETATM 24 C CAD Y01 . . . J 7 127.202 80.398 109.08 1 130.41 ? CAD Y01 2005 A 1 HETATM 25 C CAT Y01 . . . J 7 124.99 81.461 108.491 1 130.6 ? CAT Y01 2005 A 1 HETATM 26 C CAR Y01 . . . J 7 125.442 82.101 107.177 1 130.26 ? CAR Y01 2005 A 1 HETATM 27 C CBC Y01 . . . J 7 125.992 83.482 107.405 1 130.3 ? CBC Y01 2005 A 1 HETATM 28 O OAW Y01 . . . J 7 126.483 84.005 106.134 1 130.98 ? OAW Y01 2005 A 1 HETATM 29 C CAY Y01 . . . J 7 126.798 85.295 106.043 1 132.9 ? CAY Y01 2005 A 1 HETATM 30 O OAG Y01 . . . J 7 126.669 86.083 106.935 1 133.16 ? OAG Y01 2005 A 1 HETATM 31 C CAM Y01 . . . J 7 127.326 85.644 104.678 1 130.49 ? CAM Y01 2005 A 1 HETATM 32 C CAL Y01 . . . J 7 127.706 87.093 104.445 1 130.9 ? CAL Y01 2005 A 1 HETATM 33 C CAX Y01 . . . J 7 128.203 87.401 103.043 1 132.19 ? CAX Y01 2005 A 1 HETATM 34 O OAH Y01 . . . J 7 128.537 88.574 102.78 1 130.96 ? OAH Y01 2005 A 1 HETATM 35 O OAF Y01 . . . J 7 128.255 86.468 102.217 1 131.01 ? OAF Y01 2005 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #