data_8I5B # _model_server_result.job_id BQWOA1z8_aLGg77gEGkdOg _model_server_result.datetime_utc '2024-11-21 14:18:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":2021}' # _entry.id 8I5B # _exptl.entry_id 8I5B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 288.428 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Levobupivacaine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I5B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2007 NAG 4 n D NAG 2 D 2 NAG A 2008 NAG 4 n E NAG 1 E 1 NAG A 2009 NAG 4 n E NAG 2 E 2 NAG F 2004 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 315 A CYS 275 1_555 A SG CYS 364 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 355 A CYS 315 1_555 A SG CYS 370 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 935 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 937 A CYS 897 1_555 A SG CYS 943 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 975 A CYS 935 1_555 A SG CYS 984 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 1390 A CYS 1350 1_555 A SG CYS 1410 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf7 A SG CYS 1755 A CYS 1715 1_555 A SG CYS 1770 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 323 A ASN 283 1_555 G C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 1392 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 1406 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 1415 A ASN 1375 1_555 F C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 AA C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 BA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 CA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 DA C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 C ND2 ASN 66 C ASN 66 1_555 EA C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C18 H28 N2 O' _chem_comp.formula_weight 288.428 _chem_comp.id OJ0 _chem_comp.mon_nstd_flag . _chem_comp.name Levobupivacaine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2~{S})-1-butyl-~{N}-(2,6-dimethylphenyl)piperidine-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C12 OJ0 sing 355 n n C20 C16 OJ0 sing 356 n n C12 C11 OJ0 sing 357 n n C18 C16 OJ0 doub 358 n y C18 C21 OJ0 sing 359 n y C16 C13 OJ0 sing 360 n y C21 C17 OJ0 doub 361 n y C11 C09 OJ0 sing 362 n n C13 N03 OJ0 sing 363 n n C13 C15 OJ0 doub 364 n y N03 C10 OJ0 sing 365 n n C09 N02 OJ0 sing 366 n n C17 C15 OJ0 sing 367 n y C15 C19 OJ0 sing 368 n n C10 C04 OJ0 sing 369 n n C10 O01 OJ0 doub 370 n n N02 C04 OJ0 sing 371 n n N02 C06 OJ0 sing 372 n n C04 C05 OJ0 sing 373 n n C06 C08 OJ0 sing 374 n n C05 C07 OJ0 sing 375 n n C08 C07 OJ0 sing 376 n n C17 H1 OJ0 sing 377 n n C20 H2 OJ0 sing 378 n n C20 H3 OJ0 sing 379 n n C20 H4 OJ0 sing 380 n n C21 H5 OJ0 sing 381 n n N03 H7 OJ0 sing 382 n n C04 H8 OJ0 sing 383 n n C05 H9 OJ0 sing 384 n n C05 H10 OJ0 sing 385 n n C06 H11 OJ0 sing 386 n n C06 H12 OJ0 sing 387 n n C07 H13 OJ0 sing 388 n n C07 H14 OJ0 sing 389 n n C08 H15 OJ0 sing 390 n n C08 H16 OJ0 sing 391 n n C09 H17 OJ0 sing 392 n n C09 H18 OJ0 sing 393 n n C11 H19 OJ0 sing 394 n n C11 H20 OJ0 sing 395 n n C12 H21 OJ0 sing 396 n n C12 H22 OJ0 sing 397 n n C14 H23 OJ0 sing 398 n n C14 H24 OJ0 sing 399 n n C14 H25 OJ0 sing 400 n n C18 H26 OJ0 sing 401 n n C19 H27 OJ0 sing 402 n n C19 H28 OJ0 sing 403 n n C19 H29 OJ0 sing 404 n n # _atom_sites.entry_id 8I5B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 2001 2005 NAG NAG . G 5 NAG A 1 2002 2006 NAG NAG . H 6 P5S A 1 2003 2012 P5S P5S . I 7 Y01 A 1 2004 2015 Y01 Y01 . J 7 Y01 A 1 2005 2016 Y01 Y01 . K 7 Y01 A 1 2006 2017 Y01 Y01 . L 7 Y01 A 1 2007 2018 Y01 Y01 . M 7 Y01 A 1 2008 2020 Y01 Y01 . N 7 Y01 A 1 2009 2007 Y01 Y01 . O 8 LPE A 1 2010 2010 LPE LPE . P 9 PCW A 1 2011 2013 PCW PCW . Q 8 LPE A 1 2012 2015 LPE LPE . R 9 PCW A 1 2013 2016 PCW PCW . S 9 PCW A 1 2014 2018 PCW PCW . T 8 LPE A 1 2015 2020 LPE LPE . U 8 LPE A 1 2016 2021 LPE LPE . V 8 LPE A 1 2017 2023 LPE LPE . W 8 LPE A 1 2018 2024 LPE LPE . X 9 PCW A 1 2019 2035 PCW PCW . Y 9 PCW A 1 2020 2036 PCW PCW . Z 10 OJ0 A 1 2021 1 OJ0 LIG . AA 5 NAG B 1 301 301 NAG NAG . BA 5 NAG B 1 302 302 NAG NAG . CA 5 NAG B 1 303 303 NAG NAG . DA 5 NAG B 1 304 304 NAG NAG . EA 5 NAG C 1 301 301 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OJ0 . . . Z 10 124.039 123.903 105.425 1 20 ? C10 OJ0 2021 A 1 HETATM 2 C C13 OJ0 . . . Z 10 125.676 122.387 104.433 1 20 ? C13 OJ0 2021 A 1 HETATM 3 C C15 OJ0 . . . Z 10 126.022 121.593 105.481 1 20 ? C15 OJ0 2021 A 1 HETATM 4 C C17 OJ0 . . . Z 10 126.507 120.332 105.256 1 20 ? C17 OJ0 2021 A 1 HETATM 5 C C20 OJ0 . . . Z 10 125.408 122.963 102.055 1 20 ? C20 OJ0 2021 A 1 HETATM 6 C C21 OJ0 . . . Z 10 126.621 119.904 103.973 1 20 ? C21 OJ0 2021 A 1 HETATM 7 O O01 OJ0 . . . Z 10 123.529 123.004 105.938 1 20 ? O01 OJ0 2021 A 1 HETATM 8 N N02 OJ0 . . . Z 10 122.228 125.389 105.287 1 20 ? N02 OJ0 2021 A 1 HETATM 9 N N03 OJ0 . . . Z 10 125.174 123.687 104.633 1 20 ? N03 OJ0 2021 A 1 HETATM 10 C C04 OJ0 . . . Z 10 123.526 125.345 105.611 1 20 ? C04 OJ0 2021 A 1 HETATM 11 C C05 OJ0 . . . Z 10 123.838 125.787 107.104 1 20 ? C05 OJ0 2021 A 1 HETATM 12 C C06 OJ0 . . . Z 10 121.45 124.709 106.065 1 20 ? C06 OJ0 2021 A 1 HETATM 13 C C07 OJ0 . . . Z 10 122.852 125.146 108.068 1 20 ? C07 OJ0 2021 A 1 HETATM 14 C C08 OJ0 . . . Z 10 121.458 125.216 107.479 1 20 ? C08 OJ0 2021 A 1 HETATM 15 C C09 OJ0 . . . Z 10 121.93 125.378 104.02 1 20 ? C09 OJ0 2021 A 1 HETATM 16 C C11 OJ0 . . . Z 10 122.188 124.082 103.267 1 20 ? C11 OJ0 2021 A 1 HETATM 17 C C12 OJ0 . . . Z 10 121.885 124.304 101.79 1 20 ? C12 OJ0 2021 A 1 HETATM 18 C C14 OJ0 . . . Z 10 123.149 124.31 100.946 1 20 ? C14 OJ0 2021 A 1 HETATM 19 C C16 OJ0 . . . Z 10 125.81 121.993 103.162 1 20 ? C16 OJ0 2021 A 1 HETATM 20 C C18 OJ0 . . . Z 10 126.287 120.737 102.932 1 20 ? C18 OJ0 2021 A 1 HETATM 21 C C19 OJ0 . . . Z 10 125.869 122.092 106.894 1 20 ? C19 OJ0 2021 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #