data_8I5X # _model_server_result.job_id DGfeZBVPjJ-mV78Qls4DgA _model_server_result.datetime_utc '2024-12-05 00:50:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2008}' # _entry.id 8I5X # _exptl.entry_id 8I5X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I5X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N ? 7 N N N ? 7 EA N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2007 NAG 4 n D NAG 2 D 2 NAG A 2008 NAG 4 n E NAG 1 E 1 NAG A 2009 NAG 4 n E NAG 2 E 2 NAG F 2004 NAG 4 n F NAG 1 F 1 NAG D 1 NAG 4 n F NAG 2 F 2 NAG D 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 315 A CYS 275 1_555 A SG CYS 364 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 355 A CYS 315 1_555 A SG CYS 370 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 935 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 937 A CYS 897 1_555 A SG CYS 943 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 975 A CYS 935 1_555 A SG CYS 984 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 1390 A CYS 1350 1_555 A SG CYS 1410 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 1755 A CYS 1715 1_555 A SG CYS 1770 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 323 A ASN 283 1_555 G C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 1392 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 1406 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 A ND2 ASN 1415 A ASN 1375 1_555 M C1 NAG . A NAG 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 FA C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 GA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 HA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 923 n n CBA CAB Y01 sing 924 n n CBA CAN Y01 sing 925 n n CAN CAJ Y01 sing 926 n n CAJ CAO Y01 sing 927 n n CAO CBB Y01 sing 928 n n CBB CAC Y01 sing 929 n n CBB CBE Y01 sing 930 n n CBE CAP Y01 sing 931 n n CBE CBI Y01 sing 932 n n CAP CAQ Y01 sing 933 n n CAQ CBG Y01 sing 934 n n CBG CBI Y01 sing 935 n n CBG CBD Y01 sing 936 n n CBI CAE Y01 sing 937 n n CBI CAU Y01 sing 938 n n CAU CAS Y01 sing 939 n n CAS CBF Y01 sing 940 n n CBF CBD Y01 sing 941 n n CBF CBH Y01 sing 942 n n CBD CAK Y01 sing 943 n n CAK CAI Y01 sing 944 n n CAI CAZ Y01 doub 945 n n CAZ CAV Y01 sing 946 n n CAZ CBH Y01 sing 947 n n CAV CBC Y01 sing 948 n n CBH CAD Y01 sing 949 n n CBH CAT Y01 sing 950 n n CAT CAR Y01 sing 951 n n CAR CBC Y01 sing 952 n n CBC OAW Y01 sing 953 n n OAW CAY Y01 sing 954 n n CAY OAG Y01 doub 955 n n CAY CAM Y01 sing 956 n n CAM CAL Y01 sing 957 n n CAL CAX Y01 sing 958 n n CAX OAH Y01 sing 959 n n CAX OAF Y01 doub 960 n n CAA HAA1 Y01 sing 961 n n CAA HAA2 Y01 sing 962 n n CAA HAA3 Y01 sing 963 n n CBA HBA Y01 sing 964 n n CAB HAB1 Y01 sing 965 n n CAB HAB2 Y01 sing 966 n n CAB HAB3 Y01 sing 967 n n CAN HAN1 Y01 sing 968 n n CAN HAN2 Y01 sing 969 n n CAJ HAJ1 Y01 sing 970 n n CAJ HAJ2 Y01 sing 971 n n CAO HAO1 Y01 sing 972 n n CAO HAO2 Y01 sing 973 n n CBB HBB Y01 sing 974 n n CAC HAC1 Y01 sing 975 n n CAC HAC2 Y01 sing 976 n n CAC HAC3 Y01 sing 977 n n CBE HBE Y01 sing 978 n n CAP HAP1 Y01 sing 979 n n CAP HAP2 Y01 sing 980 n n CAQ HAQ1 Y01 sing 981 n n CAQ HAQ2 Y01 sing 982 n n CBG HBG Y01 sing 983 n n CBD HBD Y01 sing 984 n n CAE HAE1 Y01 sing 985 n n CAE HAE2 Y01 sing 986 n n CAE HAE3 Y01 sing 987 n n CAU HAU1 Y01 sing 988 n n CAU HAU2 Y01 sing 989 n n CAS HAS1 Y01 sing 990 n n CAS HAS2 Y01 sing 991 n n CBF HBF Y01 sing 992 n n CAK HAK1 Y01 sing 993 n n CAK HAK2 Y01 sing 994 n n CAI HAI Y01 sing 995 n n CAV HAV1 Y01 sing 996 n n CAV HAV2 Y01 sing 997 n n CBC HBC Y01 sing 998 n n CAD HAD1 Y01 sing 999 n n CAD HAD2 Y01 sing 1000 n n CAD HAD3 Y01 sing 1001 n n CAT HAT1 Y01 sing 1002 n n CAT HAT2 Y01 sing 1003 n n CAR HAR1 Y01 sing 1004 n n CAR HAR2 Y01 sing 1005 n n CAM HAM1 Y01 sing 1006 n n CAM HAM2 Y01 sing 1007 n n CAL HAL1 Y01 sing 1008 n n CAL HAL2 Y01 sing 1009 n n OAH HAH Y01 sing 1010 n n # _atom_sites.entry_id 8I5X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 2001 2006 NAG NAG . H 6 P5S A 1 2002 2012 P5S P5S . I 7 Y01 A 1 2003 2015 Y01 Y01 . J 7 Y01 A 1 2004 2016 Y01 Y01 . K 7 Y01 A 1 2005 2017 Y01 Y01 . L 8 9Z9 A 1 2006 2019 9Z9 9Z9 . M 5 NAG A 1 2007 2021 NAG NAG . N 7 Y01 A 1 2008 2022 Y01 Y01 . O 9 T7F A 1 2009 2024 T7F L3X . P 10 LPE A 1 2010 2010 LPE LPE . Q 11 PCW A 1 2011 2013 PCW PCW . R 10 LPE A 1 2012 2014 LPE LPE . S 10 LPE A 1 2013 2015 LPE LPE . T 11 PCW A 1 2014 2016 PCW PCW . U 11 PCW A 1 2015 2018 PCW PCW . V 10 LPE A 1 2016 2019 LPE LPE . W 10 LPE A 1 2017 2020 LPE LPE . X 10 LPE A 1 2018 2021 LPE LPE . Y 10 LPE A 1 2019 2022 LPE LPE . Z 10 LPE A 1 2020 2023 LPE LPE . AA 10 LPE A 1 2021 2024 LPE LPE . BA 10 LPE A 1 2022 2031 LPE LPE . CA 11 PCW A 1 2023 2035 PCW PCW . DA 11 PCW A 1 2024 2036 PCW PCW . EA 7 Y01 A 1 2025 2040 Y01 Y01 . FA 5 NAG B 1 301 301 NAG NAG . GA 5 NAG B 1 302 302 NAG NAG . HA 5 NAG B 1 303 303 NAG NAG . IA 10 LPE B 1 304 305 LPE LPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . N 7 167.521 156.531 135.336 1 117.35 ? CAA Y01 2008 A 1 HETATM 2 C CBA Y01 . . . N 7 166.078 156.886 135.014 1 117.39 ? CBA Y01 2008 A 1 HETATM 3 C CAB Y01 . . . N 7 165.678 156.31 133.665 1 116.82 ? CAB Y01 2008 A 1 HETATM 4 C CAN Y01 . . . N 7 165.13 156.423 136.122 1 117 ? CAN Y01 2008 A 1 HETATM 5 C CAJ Y01 . . . N 7 165.068 154.931 136.347 1 117.14 ? CAJ Y01 2008 A 1 HETATM 6 C CAO Y01 . . . N 7 164.327 154.547 137.607 1 117.3 ? CAO Y01 2008 A 1 HETATM 7 C CBB Y01 . . . N 7 164.929 155.099 138.909 1 118.03 ? CBB Y01 2008 A 1 HETATM 8 C CAC Y01 . . . N 7 164.022 156.174 139.502 1 117.95 ? CAC Y01 2008 A 1 HETATM 9 C CBE Y01 . . . N 7 165.238 153.955 139.893 1 117.46 ? CBE Y01 2008 A 1 HETATM 10 C CAP Y01 . . . N 7 165.704 152.662 139.171 1 117.33 ? CAP Y01 2008 A 1 HETATM 11 C CAQ Y01 . . . N 7 166.662 151.93 140.132 1 116.56 ? CAQ Y01 2008 A 1 HETATM 12 C CBG Y01 . . . N 7 166.519 152.697 141.443 1 115.33 ? CBG Y01 2008 A 1 HETATM 13 C CBI Y01 . . . N 7 166.324 154.157 140.991 1 117.03 ? CBI Y01 2008 A 1 HETATM 14 C CAE Y01 . . . N 7 167.601 154.741 140.362 1 118.08 ? CAE Y01 2008 A 1 HETATM 15 C CAU Y01 . . . N 7 165.915 154.952 142.235 1 114.89 ? CAU Y01 2008 A 1 HETATM 16 C CAS Y01 . . . N 7 166.973 154.838 143.338 1 115.18 ? CAS Y01 2008 A 1 HETATM 17 C CBF Y01 . . . N 7 167.269 153.385 143.74 1 116.09 ? CBF Y01 2008 A 1 HETATM 18 C CBD Y01 . . . N 7 167.581 152.501 142.518 1 115.76 ? CBD Y01 2008 A 1 HETATM 19 C CAK Y01 . . . N 7 167.656 151.038 142.943 1 114.86 ? CAK Y01 2008 A 1 HETATM 20 C CAI Y01 . . . N 7 168.409 150.85 144.222 1 115.42 ? CAI Y01 2008 A 1 HETATM 21 C CAZ Y01 . . . N 7 168.793 151.831 145.026 1 117.29 ? CAZ Y01 2008 A 1 HETATM 22 C CAV Y01 . . . N 7 169.669 151.552 146.229 1 118.34 ? CAV Y01 2008 A 1 HETATM 23 C CBH Y01 . . . N 7 168.371 153.284 144.834 1 117.61 ? CBH Y01 2008 A 1 HETATM 24 C CAD Y01 . . . N 7 169.624 154.096 144.458 1 116.12 ? CAD Y01 2008 A 1 HETATM 25 C CAT Y01 . . . N 7 167.801 153.793 146.178 1 117.07 ? CAT Y01 2008 A 1 HETATM 26 C CAR Y01 . . . N 7 168.722 153.529 147.371 1 117.7 ? CAR Y01 2008 A 1 HETATM 27 C CBC Y01 . . . N 7 169.041 152.065 147.505 1 118.71 ? CBC Y01 2008 A 1 HETATM 28 O OAW Y01 . . . N 7 170.013 151.892 148.579 1 118.03 ? OAW Y01 2008 A 1 HETATM 29 C CAY Y01 . . . N 7 170.327 150.659 148.972 1 117.44 ? CAY Y01 2008 A 1 HETATM 30 O OAG Y01 . . . N 7 169.685 149.685 148.702 1 116.56 ? OAG Y01 2008 A 1 HETATM 31 C CAM Y01 . . . N 7 171.603 150.637 149.768 1 117.11 ? CAM Y01 2008 A 1 HETATM 32 C CAL Y01 . . . N 7 172.082 149.285 150.258 1 116.56 ? CAL Y01 2008 A 1 HETATM 33 C CAX Y01 . . . N 7 173.435 149.306 150.95 1 117.46 ? CAX Y01 2008 A 1 HETATM 34 O OAH Y01 . . . N 7 173.883 148.233 151.4 1 117.63 ? OAH Y01 2008 A 1 HETATM 35 O OAF Y01 . . . N 7 174.039 150.394 151.031 1 116.22 ? OAF Y01 2008 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #