data_8I65 # _model_server_result.job_id u-Gfe4jtNTiayabXQbiBPQ _model_server_result.datetime_utc '2024-11-24 14:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8I65 # _exptl.entry_id 8I65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.93 _cell.angle_gamma 90 _cell.entry_id 8I65 _cell.length_a 39.13 _cell.length_b 63.22 _cell.length_c 45.38 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id 5CU _chem_comp.mon_nstd_flag . _chem_comp.name '2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 5CU sing 1 n n N1 C2 5CU sing 2 n n O2 C2 5CU doub 3 n n C6 C5 5CU doub 4 n n C2 N3 5CU sing 5 n n O53 C51 5CU doub 6 n n C5 C51 5CU sing 7 n n C5 C4 5CU sing 8 n n N3 C4 5CU sing 9 n n C51 O52 5CU sing 10 n n C4 O4 5CU doub 11 n n O52 H1 5CU sing 12 n n N3 H3 5CU sing 13 n n C6 H4 5CU sing 14 n n N1 H2 5CU sing 15 n n # _atom_sites.entry_id 8I65 _atom_sites.fract_transf_matrix[1][1] 0.025556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010811 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5CU A 1 301 301 5CU 5CU . C 3 EDO A 1 302 401 EDO EDO . D 3 EDO A 1 303 501 EDO EDO . E 3 EDO A 1 304 601 EDO EDO . F 3 EDO A 1 305 701 EDO EDO . G 3 EDO A 1 306 801 EDO EDO . H 3 EDO A 1 307 901 EDO EDO . I 4 HOH A 1 401 298 HOH HOH . I 4 HOH A 2 402 287 HOH HOH . I 4 HOH A 3 403 244 HOH HOH . I 4 HOH A 4 404 271 HOH HOH . I 4 HOH A 5 405 247 HOH HOH . I 4 HOH A 6 406 159 HOH HOH . I 4 HOH A 7 407 269 HOH HOH . I 4 HOH A 8 408 157 HOH HOH . I 4 HOH A 9 409 241 HOH HOH . I 4 HOH A 10 410 22 HOH HOH . I 4 HOH A 11 411 300 HOH HOH . I 4 HOH A 12 412 82 HOH HOH . I 4 HOH A 13 413 260 HOH HOH . I 4 HOH A 14 414 78 HOH HOH . I 4 HOH A 15 415 226 HOH HOH . I 4 HOH A 16 416 58 HOH HOH . I 4 HOH A 17 417 222 HOH HOH . I 4 HOH A 18 418 235 HOH HOH . I 4 HOH A 19 419 2 HOH HOH . I 4 HOH A 20 420 91 HOH HOH . I 4 HOH A 21 421 116 HOH HOH . I 4 HOH A 22 422 294 HOH HOH . I 4 HOH A 23 423 236 HOH HOH . I 4 HOH A 24 424 122 HOH HOH . I 4 HOH A 25 425 174 HOH HOH . I 4 HOH A 26 426 237 HOH HOH . I 4 HOH A 27 427 127 HOH HOH . I 4 HOH A 28 428 212 HOH HOH . I 4 HOH A 29 429 98 HOH HOH . I 4 HOH A 30 430 80 HOH HOH . I 4 HOH A 31 431 105 HOH HOH . I 4 HOH A 32 432 53 HOH HOH . I 4 HOH A 33 433 25 HOH HOH . I 4 HOH A 34 434 118 HOH HOH . I 4 HOH A 35 435 279 HOH HOH . I 4 HOH A 36 436 276 HOH HOH . I 4 HOH A 37 437 253 HOH HOH . I 4 HOH A 38 438 192 HOH HOH . I 4 HOH A 39 439 16 HOH HOH . I 4 HOH A 40 440 283 HOH HOH . I 4 HOH A 41 441 120 HOH HOH . I 4 HOH A 42 442 121 HOH HOH . I 4 HOH A 43 443 257 HOH HOH . I 4 HOH A 44 444 75 HOH HOH . I 4 HOH A 45 445 86 HOH HOH . I 4 HOH A 46 446 68 HOH HOH . I 4 HOH A 47 447 42 HOH HOH . I 4 HOH A 48 448 263 HOH HOH . I 4 HOH A 49 449 255 HOH HOH . I 4 HOH A 50 450 243 HOH HOH . I 4 HOH A 51 451 126 HOH HOH . I 4 HOH A 52 452 28 HOH HOH . I 4 HOH A 53 453 254 HOH HOH . I 4 HOH A 54 454 273 HOH HOH . I 4 HOH A 55 455 141 HOH HOH . I 4 HOH A 56 456 39 HOH HOH . I 4 HOH A 57 457 195 HOH HOH . I 4 HOH A 58 458 140 HOH HOH . I 4 HOH A 59 459 92 HOH HOH . I 4 HOH A 60 460 65 HOH HOH . I 4 HOH A 61 461 234 HOH HOH . I 4 HOH A 62 462 44 HOH HOH . I 4 HOH A 63 463 190 HOH HOH . I 4 HOH A 64 464 110 HOH HOH . I 4 HOH A 65 465 150 HOH HOH . I 4 HOH A 66 466 45 HOH HOH . I 4 HOH A 67 467 108 HOH HOH . I 4 HOH A 68 468 238 HOH HOH . I 4 HOH A 69 469 282 HOH HOH . I 4 HOH A 70 470 295 HOH HOH . I 4 HOH A 71 471 46 HOH HOH . I 4 HOH A 72 472 33 HOH HOH . I 4 HOH A 73 473 138 HOH HOH . I 4 HOH A 74 474 104 HOH HOH . I 4 HOH A 75 475 10 HOH HOH . I 4 HOH A 76 476 90 HOH HOH . I 4 HOH A 77 477 1 HOH HOH . I 4 HOH A 78 478 20 HOH HOH . I 4 HOH A 79 479 147 HOH HOH . I 4 HOH A 80 480 196 HOH HOH . I 4 HOH A 81 481 193 HOH HOH . I 4 HOH A 82 482 85 HOH HOH . I 4 HOH A 83 483 274 HOH HOH . I 4 HOH A 84 484 64 HOH HOH . I 4 HOH A 85 485 180 HOH HOH . I 4 HOH A 86 486 4 HOH HOH . I 4 HOH A 87 487 79 HOH HOH . I 4 HOH A 88 488 194 HOH HOH . I 4 HOH A 89 489 229 HOH HOH . I 4 HOH A 90 490 18 HOH HOH . I 4 HOH A 91 491 9 HOH HOH . I 4 HOH A 92 492 43 HOH HOH . I 4 HOH A 93 493 239 HOH HOH . I 4 HOH A 94 494 27 HOH HOH . I 4 HOH A 95 495 97 HOH HOH . I 4 HOH A 96 496 61 HOH HOH . I 4 HOH A 97 497 216 HOH HOH . I 4 HOH A 98 498 87 HOH HOH . I 4 HOH A 99 499 38 HOH HOH . I 4 HOH A 100 500 117 HOH HOH . I 4 HOH A 101 501 54 HOH HOH . I 4 HOH A 102 502 30 HOH HOH . I 4 HOH A 103 503 52 HOH HOH . I 4 HOH A 104 504 55 HOH HOH . I 4 HOH A 105 505 139 HOH HOH . I 4 HOH A 106 506 136 HOH HOH . I 4 HOH A 107 507 152 HOH HOH . I 4 HOH A 108 508 34 HOH HOH . I 4 HOH A 109 509 56 HOH HOH . I 4 HOH A 110 510 231 HOH HOH . I 4 HOH A 111 511 170 HOH HOH . I 4 HOH A 112 512 129 HOH HOH . I 4 HOH A 113 513 145 HOH HOH . I 4 HOH A 114 514 23 HOH HOH . I 4 HOH A 115 515 199 HOH HOH . I 4 HOH A 116 516 149 HOH HOH . I 4 HOH A 117 517 167 HOH HOH . I 4 HOH A 118 518 252 HOH HOH . I 4 HOH A 119 519 103 HOH HOH . I 4 HOH A 120 520 101 HOH HOH . I 4 HOH A 121 521 160 HOH HOH . I 4 HOH A 122 522 259 HOH HOH . I 4 HOH A 123 523 83 HOH HOH . I 4 HOH A 124 524 66 HOH HOH . I 4 HOH A 125 525 164 HOH HOH . I 4 HOH A 126 526 17 HOH HOH . I 4 HOH A 127 527 72 HOH HOH . I 4 HOH A 128 528 114 HOH HOH . I 4 HOH A 129 529 14 HOH HOH . I 4 HOH A 130 530 133 HOH HOH . I 4 HOH A 131 531 161 HOH HOH . I 4 HOH A 132 532 59 HOH HOH . I 4 HOH A 133 533 248 HOH HOH . I 4 HOH A 134 534 74 HOH HOH . I 4 HOH A 135 535 95 HOH HOH . I 4 HOH A 136 536 26 HOH HOH . I 4 HOH A 137 537 11 HOH HOH . I 4 HOH A 138 538 96 HOH HOH . I 4 HOH A 139 539 228 HOH HOH . I 4 HOH A 140 540 6 HOH HOH . I 4 HOH A 141 541 24 HOH HOH . I 4 HOH A 142 542 88 HOH HOH . I 4 HOH A 143 543 168 HOH HOH . I 4 HOH A 144 544 15 HOH HOH . I 4 HOH A 145 545 93 HOH HOH . I 4 HOH A 146 546 31 HOH HOH . I 4 HOH A 147 547 3 HOH HOH . I 4 HOH A 148 548 36 HOH HOH . I 4 HOH A 149 549 178 HOH HOH . I 4 HOH A 150 550 175 HOH HOH . I 4 HOH A 151 551 154 HOH HOH . I 4 HOH A 152 552 115 HOH HOH . I 4 HOH A 153 553 123 HOH HOH . I 4 HOH A 154 554 109 HOH HOH . I 4 HOH A 155 555 185 HOH HOH . I 4 HOH A 156 556 35 HOH HOH . I 4 HOH A 157 557 12 HOH HOH . I 4 HOH A 158 558 246 HOH HOH . I 4 HOH A 159 559 119 HOH HOH . I 4 HOH A 160 560 158 HOH HOH . I 4 HOH A 161 561 182 HOH HOH . I 4 HOH A 162 562 176 HOH HOH . I 4 HOH A 163 563 51 HOH HOH . I 4 HOH A 164 564 172 HOH HOH . I 4 HOH A 165 565 148 HOH HOH . I 4 HOH A 166 566 29 HOH HOH . I 4 HOH A 167 567 217 HOH HOH . I 4 HOH A 168 568 48 HOH HOH . I 4 HOH A 169 569 60 HOH HOH . I 4 HOH A 170 570 131 HOH HOH . I 4 HOH A 171 571 47 HOH HOH . I 4 HOH A 172 572 301 HOH HOH . I 4 HOH A 173 573 5 HOH HOH . I 4 HOH A 174 574 70 HOH HOH . I 4 HOH A 175 575 256 HOH HOH . I 4 HOH A 176 576 181 HOH HOH . I 4 HOH A 177 577 81 HOH HOH . I 4 HOH A 178 578 189 HOH HOH . I 4 HOH A 179 579 62 HOH HOH . I 4 HOH A 180 580 102 HOH HOH . I 4 HOH A 181 581 40 HOH HOH . I 4 HOH A 182 582 7 HOH HOH . I 4 HOH A 183 583 8 HOH HOH . I 4 HOH A 184 584 89 HOH HOH . I 4 HOH A 185 585 200 HOH HOH . I 4 HOH A 186 586 50 HOH HOH . I 4 HOH A 187 587 240 HOH HOH . I 4 HOH A 188 588 201 HOH HOH . I 4 HOH A 189 589 21 HOH HOH . I 4 HOH A 190 590 13 HOH HOH . I 4 HOH A 191 591 67 HOH HOH . I 4 HOH A 192 592 69 HOH HOH . I 4 HOH A 193 593 19 HOH HOH . I 4 HOH A 194 594 211 HOH HOH . I 4 HOH A 195 595 186 HOH HOH . I 4 HOH A 196 596 250 HOH HOH . I 4 HOH A 197 597 245 HOH HOH . I 4 HOH A 198 598 162 HOH HOH . I 4 HOH A 199 599 124 HOH HOH . I 4 HOH A 200 600 171 HOH HOH . I 4 HOH A 201 601 289 HOH HOH . I 4 HOH A 202 602 137 HOH HOH . I 4 HOH A 203 603 84 HOH HOH . I 4 HOH A 204 604 106 HOH HOH . I 4 HOH A 205 605 165 HOH HOH . I 4 HOH A 206 606 63 HOH HOH . I 4 HOH A 207 607 297 HOH HOH . I 4 HOH A 208 608 191 HOH HOH . I 4 HOH A 209 609 37 HOH HOH . I 4 HOH A 210 610 71 HOH HOH . I 4 HOH A 211 611 173 HOH HOH . I 4 HOH A 212 612 286 HOH HOH . I 4 HOH A 213 613 128 HOH HOH . I 4 HOH A 214 614 302 HOH HOH . I 4 HOH A 215 615 202 HOH HOH . I 4 HOH A 216 616 183 HOH HOH . I 4 HOH A 217 617 242 HOH HOH . I 4 HOH A 218 618 156 HOH HOH . I 4 HOH A 219 619 258 HOH HOH . I 4 HOH A 220 620 57 HOH HOH . I 4 HOH A 221 621 278 HOH HOH . I 4 HOH A 222 622 169 HOH HOH . I 4 HOH A 223 623 204 HOH HOH . I 4 HOH A 224 624 113 HOH HOH . I 4 HOH A 225 625 94 HOH HOH . I 4 HOH A 226 626 221 HOH HOH . I 4 HOH A 227 627 249 HOH HOH . I 4 HOH A 228 628 206 HOH HOH . I 4 HOH A 229 629 132 HOH HOH . I 4 HOH A 230 630 299 HOH HOH . I 4 HOH A 231 631 208 HOH HOH . I 4 HOH A 232 632 112 HOH HOH . I 4 HOH A 233 633 32 HOH HOH . I 4 HOH A 234 634 265 HOH HOH . I 4 HOH A 235 635 288 HOH HOH . I 4 HOH A 236 636 151 HOH HOH . I 4 HOH A 237 637 219 HOH HOH . I 4 HOH A 238 638 99 HOH HOH . I 4 HOH A 239 639 275 HOH HOH . I 4 HOH A 240 640 268 HOH HOH . I 4 HOH A 241 641 205 HOH HOH . I 4 HOH A 242 642 267 HOH HOH . I 4 HOH A 243 643 187 HOH HOH . I 4 HOH A 244 644 251 HOH HOH . I 4 HOH A 245 645 153 HOH HOH . I 4 HOH A 246 646 264 HOH HOH . I 4 HOH A 247 647 184 HOH HOH . I 4 HOH A 248 648 125 HOH HOH . I 4 HOH A 249 649 177 HOH HOH . I 4 HOH A 250 650 277 HOH HOH . I 4 HOH A 251 651 207 HOH HOH . I 4 HOH A 252 652 215 HOH HOH . I 4 HOH A 253 653 143 HOH HOH . I 4 HOH A 254 654 130 HOH HOH . I 4 HOH A 255 655 107 HOH HOH . I 4 HOH A 256 656 179 HOH HOH . I 4 HOH A 257 657 210 HOH HOH . I 4 HOH A 258 658 197 HOH HOH . I 4 HOH A 259 659 230 HOH HOH . I 4 HOH A 260 660 270 HOH HOH . I 4 HOH A 261 661 111 HOH HOH . I 4 HOH A 262 662 100 HOH HOH . I 4 HOH A 263 663 292 HOH HOH . I 4 HOH A 264 664 41 HOH HOH . I 4 HOH A 265 665 135 HOH HOH . I 4 HOH A 266 666 227 HOH HOH . I 4 HOH A 267 667 272 HOH HOH . I 4 HOH A 268 668 296 HOH HOH . I 4 HOH A 269 669 293 HOH HOH . I 4 HOH A 270 670 146 HOH HOH . I 4 HOH A 271 671 261 HOH HOH . I 4 HOH A 272 672 262 HOH HOH . I 4 HOH A 273 673 213 HOH HOH . I 4 HOH A 274 674 163 HOH HOH . I 4 HOH A 275 675 284 HOH HOH . I 4 HOH A 276 676 73 HOH HOH . I 4 HOH A 277 677 203 HOH HOH . I 4 HOH A 278 678 49 HOH HOH . I 4 HOH A 279 679 134 HOH HOH . I 4 HOH A 280 680 285 HOH HOH . I 4 HOH A 281 681 166 HOH HOH . I 4 HOH A 282 682 198 HOH HOH . I 4 HOH A 283 683 142 HOH HOH . I 4 HOH A 284 684 76 HOH HOH . I 4 HOH A 285 685 220 HOH HOH . I 4 HOH A 286 686 291 HOH HOH . I 4 HOH A 287 687 188 HOH HOH . I 4 HOH A 288 688 209 HOH HOH . I 4 HOH A 289 689 77 HOH HOH . I 4 HOH A 290 690 232 HOH HOH . I 4 HOH A 291 691 281 HOH HOH . I 4 HOH A 292 692 144 HOH HOH . I 4 HOH A 293 693 214 HOH HOH . I 4 HOH A 294 694 218 HOH HOH . I 4 HOH A 295 695 224 HOH HOH . I 4 HOH A 296 696 233 HOH HOH . I 4 HOH A 297 697 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O53 5CU . . . B 2 22.869 -8.913 40.077 1 34.59 ? O53 5CU 301 A 1 HETATM 2 C C51 5CU . . . B 2 23.812 -8.25 40.623 1 30.01 ? C51 5CU 301 A 1 HETATM 3 O O52 5CU . . . B 2 23.84 -6.985 40.692 1 36.04 ? O52 5CU 301 A 1 HETATM 4 C C5 5CU . . . B 2 24.935 -9.027 41.288 1 19.77 ? C5 5CU 301 A 1 HETATM 5 C C4 5CU . . . B 2 26.289 -8.554 41.315 1 16.53 ? C4 5CU 301 A 1 HETATM 6 O O4 5CU . . . B 2 26.696 -7.524 40.796 1 15.35 ? O4 5CU 301 A 1 HETATM 7 N N3 5CU . . . B 2 27.209 -9.365 41.969 1 14.56 ? N3 5CU 301 A 1 HETATM 8 C C2 5CU . . . B 2 26.915 -10.531 42.617 1 15.2 ? C2 5CU 301 A 1 HETATM 9 O O2 5CU . . . B 2 27.737 -11.212 43.213 1 14.56 ? O2 5CU 301 A 1 HETATM 10 N N1 5CU . . . B 2 25.591 -10.901 42.552 1 17.32 ? N1 5CU 301 A 1 HETATM 11 C C6 5CU . . . B 2 24.642 -10.178 41.926 1 19.31 ? C6 5CU 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #