data_8I66
#
_model_server_result.job_id            8cgUtS4ZDB11hwdrPm3kvA 
_model_server_result.datetime_utc      '2024-11-08 09:55:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i66 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    8I66 
#
_exptl.entry_id    8I66 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              156.096 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.29 
_cell.angle_gamma         90 
_cell.entry_id            8I66 
_cell.length_a            39.12 
_cell.length_b            63.97 
_cell.length_c            45.39 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I66 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H4 N2 O4' 
_chem_comp.formula_weight    156.096 
_chem_comp.id                5CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C6 5CU sing 1 n n 
N1 C2 5CU sing 2 n n 
O2 C2 5CU doub 3 n n 
C6 C5 5CU doub 4 n n 
C2 N3 5CU sing 5 n n 
O53 C51 5CU doub 6 n n 
C5 C51 5CU sing 7 n n 
C5 C4 5CU sing 8 n n 
N3 C4 5CU sing 9 n n 
C51 O52 5CU sing 10 n n 
C4 O4 5CU doub 11 n n 
O52 H1 5CU sing 12 n n 
N3 H3 5CU sing 13 n n 
C6 H4 5CU sing 14 n n 
N1 H2 5CU sing 15 n n 
#
_atom_sites.entry_id                     8I66 
_atom_sites.fract_transf_matrix[1][1]    0.025562 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.010479 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015632 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023811 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5CU A 1 301 301 5CU 5CU . 
C 3 CIT A 1 302 401 CIT CIT . 
D 4 HOH A 1 401 21 HOH HOH . 
D 4 HOH A 2 402 15 HOH HOH . 
D 4 HOH A 3 403 22 HOH HOH . 
D 4 HOH A 4 404 34 HOH HOH . 
D 4 HOH A 5 405 13 HOH HOH . 
D 4 HOH A 6 406 3 HOH HOH . 
D 4 HOH A 7 407 1 HOH HOH . 
D 4 HOH A 8 408 2 HOH HOH . 
D 4 HOH A 9 409 35 HOH HOH . 
D 4 HOH A 10 410 20 HOH HOH . 
D 4 HOH A 11 411 14 HOH HOH . 
D 4 HOH A 12 412 26 HOH HOH . 
D 4 HOH A 13 413 4 HOH HOH . 
D 4 HOH A 14 414 10 HOH HOH . 
D 4 HOH A 15 415 8 HOH HOH . 
D 4 HOH A 16 416 16 HOH HOH . 
D 4 HOH A 17 417 7 HOH HOH . 
D 4 HOH A 18 418 33 HOH HOH . 
D 4 HOH A 19 419 23 HOH HOH . 
D 4 HOH A 20 420 30 HOH HOH . 
D 4 HOH A 21 421 17 HOH HOH . 
D 4 HOH A 22 422 36 HOH HOH . 
D 4 HOH A 23 423 27 HOH HOH . 
D 4 HOH A 24 424 9 HOH HOH . 
D 4 HOH A 25 425 6 HOH HOH . 
D 4 HOH A 26 426 18 HOH HOH . 
D 4 HOH A 27 427 5 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 32 HOH HOH . 
D 4 HOH A 30 430 24 HOH HOH . 
D 4 HOH A 31 431 31 HOH HOH . 
D 4 HOH A 32 432 25 HOH HOH . 
D 4 HOH A 33 433 12 HOH HOH . 
D 4 HOH A 34 434 19 HOH HOH . 
D 4 HOH A 35 435 29 HOH HOH . 
D 4 HOH A 36 436 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O53 5CU . . . B 2 27.687 -7.559 40.702 1 34.53 ? O53 5CU 301 A 1 
HETATM 2 C C51 5CU . . . B 2 26.765 -8.346 40.997 1 35.33 ? C51 5CU 301 A 1 
HETATM 3 O O52 5CU . . . B 2 25.554 -8.186 40.716 1 36.54 ? O52 5CU 301 A 1 
HETATM 4 C C5 5CU . . . B 2 27.087 -9.51 41.872 1 34.46 ? C5 5CU 301 A 1 
HETATM 5 C C4 5CU . . . B 2 26.055 -10.391 42.235 1 35.08 ? C4 5CU 301 A 1 
HETATM 6 O O4 5CU . . . B 2 24.892 -10.317 41.853 1 36.31 ? O4 5CU 301 A 1 
HETATM 7 N N3 5CU . . . B 2 26.42 -11.41 43.095 1 40.53 ? N3 5CU 301 A 1 
HETATM 8 C C2 5CU . . . B 2 27.66 -11.623 43.627 1 38.36 ? C2 5CU 301 A 1 
HETATM 9 O O2 5CU . . . B 2 27.898 -12.542 44.416 1 39.1 ? O2 5CU 301 A 1 
HETATM 10 N N1 5CU . . . B 2 28.602 -10.721 43.206 1 35.03 ? N1 5CU 301 A 1 
HETATM 11 C C6 5CU . . . B 2 28.32 -9.695 42.379 1 36.3 ? C6 5CU 301 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#