data_8I6A # _model_server_result.job_id 0xxDcs7fbbQAChCSnFXNZw _model_server_result.datetime_utc '2024-10-19 10:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8I6A # _exptl.entry_id 8I6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I6A _cell.length_a 46.58 _cell.length_b 59.7 _cell.length_c 75.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 246 n y N1 C6 ORO sing 247 n y N1 HN1 ORO sing 248 n n C2 O2 ORO doub 249 n n C2 N3 ORO sing 250 n y N3 C4 ORO sing 251 n y N3 HN3 ORO sing 252 n n C4 O4 ORO doub 253 n n C4 C5 ORO sing 254 n y C5 C6 ORO doub 255 n y C5 H5 ORO sing 256 n n C6 C7 ORO sing 257 n n C7 O71 ORO doub 258 n n C7 O72 ORO sing 259 n n O72 HO7 ORO sing 260 n n # _atom_sites.entry_id 8I6A _atom_sites.fract_transf_matrix[1][1] 0.021468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ORO A 1 301 301 ORO ORO . C 3 EDO A 1 302 401 EDO EDO . D 3 EDO A 1 303 501 EDO EDO . E 3 EDO A 1 304 601 EDO EDO . F 4 HOH A 1 401 130 HOH HOH . F 4 HOH A 2 402 162 HOH HOH . F 4 HOH A 3 403 158 HOH HOH . F 4 HOH A 4 404 89 HOH HOH . F 4 HOH A 5 405 103 HOH HOH . F 4 HOH A 6 406 161 HOH HOH . F 4 HOH A 7 407 11 HOH HOH . F 4 HOH A 8 408 165 HOH HOH . F 4 HOH A 9 409 62 HOH HOH . F 4 HOH A 10 410 75 HOH HOH . F 4 HOH A 11 411 141 HOH HOH . F 4 HOH A 12 412 151 HOH HOH . F 4 HOH A 13 413 39 HOH HOH . F 4 HOH A 14 414 105 HOH HOH . F 4 HOH A 15 415 166 HOH HOH . F 4 HOH A 16 416 12 HOH HOH . F 4 HOH A 17 417 148 HOH HOH . F 4 HOH A 18 418 77 HOH HOH . F 4 HOH A 19 419 27 HOH HOH . F 4 HOH A 20 420 82 HOH HOH . F 4 HOH A 21 421 67 HOH HOH . F 4 HOH A 22 422 153 HOH HOH . F 4 HOH A 23 423 53 HOH HOH . F 4 HOH A 24 424 159 HOH HOH . F 4 HOH A 25 425 7 HOH HOH . F 4 HOH A 26 426 59 HOH HOH . F 4 HOH A 27 427 2 HOH HOH . F 4 HOH A 28 428 31 HOH HOH . F 4 HOH A 29 429 44 HOH HOH . F 4 HOH A 30 430 48 HOH HOH . F 4 HOH A 31 431 36 HOH HOH . F 4 HOH A 32 432 145 HOH HOH . F 4 HOH A 33 433 1 HOH HOH . F 4 HOH A 34 434 112 HOH HOH . F 4 HOH A 35 435 71 HOH HOH . F 4 HOH A 36 436 41 HOH HOH . F 4 HOH A 37 437 83 HOH HOH . F 4 HOH A 38 438 122 HOH HOH . F 4 HOH A 39 439 63 HOH HOH . F 4 HOH A 40 440 160 HOH HOH . F 4 HOH A 41 441 35 HOH HOH . F 4 HOH A 42 442 140 HOH HOH . F 4 HOH A 43 443 144 HOH HOH . F 4 HOH A 44 444 13 HOH HOH . F 4 HOH A 45 445 155 HOH HOH . F 4 HOH A 46 446 8 HOH HOH . F 4 HOH A 47 447 70 HOH HOH . F 4 HOH A 48 448 10 HOH HOH . F 4 HOH A 49 449 136 HOH HOH . F 4 HOH A 50 450 146 HOH HOH . F 4 HOH A 51 451 68 HOH HOH . F 4 HOH A 52 452 142 HOH HOH . F 4 HOH A 53 453 43 HOH HOH . F 4 HOH A 54 454 170 HOH HOH . F 4 HOH A 55 455 171 HOH HOH . F 4 HOH A 56 456 38 HOH HOH . F 4 HOH A 57 457 29 HOH HOH . F 4 HOH A 58 458 50 HOH HOH . F 4 HOH A 59 459 169 HOH HOH . F 4 HOH A 60 460 55 HOH HOH . F 4 HOH A 61 461 61 HOH HOH . F 4 HOH A 62 462 98 HOH HOH . F 4 HOH A 63 463 57 HOH HOH . F 4 HOH A 64 464 69 HOH HOH . F 4 HOH A 65 465 72 HOH HOH . F 4 HOH A 66 466 124 HOH HOH . F 4 HOH A 67 467 22 HOH HOH . F 4 HOH A 68 468 33 HOH HOH . F 4 HOH A 69 469 74 HOH HOH . F 4 HOH A 70 470 25 HOH HOH . F 4 HOH A 71 471 24 HOH HOH . F 4 HOH A 72 472 66 HOH HOH . F 4 HOH A 73 473 91 HOH HOH . F 4 HOH A 74 474 123 HOH HOH . F 4 HOH A 75 475 56 HOH HOH . F 4 HOH A 76 476 17 HOH HOH . F 4 HOH A 77 477 106 HOH HOH . F 4 HOH A 78 478 20 HOH HOH . F 4 HOH A 79 479 18 HOH HOH . F 4 HOH A 80 480 94 HOH HOH . F 4 HOH A 81 481 4 HOH HOH . F 4 HOH A 82 482 118 HOH HOH . F 4 HOH A 83 483 86 HOH HOH . F 4 HOH A 84 484 42 HOH HOH . F 4 HOH A 85 485 90 HOH HOH . F 4 HOH A 86 486 109 HOH HOH . F 4 HOH A 87 487 34 HOH HOH . F 4 HOH A 88 488 111 HOH HOH . F 4 HOH A 89 489 164 HOH HOH . F 4 HOH A 90 490 81 HOH HOH . F 4 HOH A 91 491 76 HOH HOH . F 4 HOH A 92 492 14 HOH HOH . F 4 HOH A 93 493 114 HOH HOH . F 4 HOH A 94 494 121 HOH HOH . F 4 HOH A 95 495 167 HOH HOH . F 4 HOH A 96 496 46 HOH HOH . F 4 HOH A 97 497 149 HOH HOH . F 4 HOH A 98 498 51 HOH HOH . F 4 HOH A 99 499 16 HOH HOH . F 4 HOH A 100 500 45 HOH HOH . F 4 HOH A 101 501 80 HOH HOH . F 4 HOH A 102 502 154 HOH HOH . F 4 HOH A 103 503 28 HOH HOH . F 4 HOH A 104 504 19 HOH HOH . F 4 HOH A 105 505 30 HOH HOH . F 4 HOH A 106 506 88 HOH HOH . F 4 HOH A 107 507 52 HOH HOH . F 4 HOH A 108 508 93 HOH HOH . F 4 HOH A 109 509 23 HOH HOH . F 4 HOH A 110 510 21 HOH HOH . F 4 HOH A 111 511 47 HOH HOH . F 4 HOH A 112 512 131 HOH HOH . F 4 HOH A 113 513 79 HOH HOH . F 4 HOH A 114 514 54 HOH HOH . F 4 HOH A 115 515 6 HOH HOH . F 4 HOH A 116 516 73 HOH HOH . F 4 HOH A 117 517 120 HOH HOH . F 4 HOH A 118 518 15 HOH HOH . F 4 HOH A 119 519 150 HOH HOH . F 4 HOH A 120 520 5 HOH HOH . F 4 HOH A 121 521 102 HOH HOH . F 4 HOH A 122 522 113 HOH HOH . F 4 HOH A 123 523 101 HOH HOH . F 4 HOH A 124 524 9 HOH HOH . F 4 HOH A 125 525 119 HOH HOH . F 4 HOH A 126 526 129 HOH HOH . F 4 HOH A 127 527 128 HOH HOH . F 4 HOH A 128 528 26 HOH HOH . F 4 HOH A 129 529 32 HOH HOH . F 4 HOH A 130 530 49 HOH HOH . F 4 HOH A 131 531 37 HOH HOH . F 4 HOH A 132 532 3 HOH HOH . F 4 HOH A 133 533 84 HOH HOH . F 4 HOH A 134 534 104 HOH HOH . F 4 HOH A 135 535 60 HOH HOH . F 4 HOH A 136 536 127 HOH HOH . F 4 HOH A 137 537 78 HOH HOH . F 4 HOH A 138 538 110 HOH HOH . F 4 HOH A 139 539 126 HOH HOH . F 4 HOH A 140 540 147 HOH HOH . F 4 HOH A 141 541 168 HOH HOH . F 4 HOH A 142 542 96 HOH HOH . F 4 HOH A 143 543 64 HOH HOH . F 4 HOH A 144 544 163 HOH HOH . F 4 HOH A 145 545 40 HOH HOH . F 4 HOH A 146 546 107 HOH HOH . F 4 HOH A 147 547 156 HOH HOH . F 4 HOH A 148 548 115 HOH HOH . F 4 HOH A 149 549 143 HOH HOH . F 4 HOH A 150 550 58 HOH HOH . F 4 HOH A 151 551 125 HOH HOH . F 4 HOH A 152 552 132 HOH HOH . F 4 HOH A 153 553 108 HOH HOH . F 4 HOH A 154 554 97 HOH HOH . F 4 HOH A 155 555 87 HOH HOH . F 4 HOH A 156 556 99 HOH HOH . F 4 HOH A 157 557 135 HOH HOH . F 4 HOH A 158 558 133 HOH HOH . F 4 HOH A 159 559 117 HOH HOH . F 4 HOH A 160 560 65 HOH HOH . F 4 HOH A 161 561 85 HOH HOH . F 4 HOH A 162 562 95 HOH HOH . F 4 HOH A 163 563 116 HOH HOH . F 4 HOH A 164 564 139 HOH HOH . F 4 HOH A 165 565 92 HOH HOH . F 4 HOH A 166 566 134 HOH HOH . F 4 HOH A 167 567 100 HOH HOH . F 4 HOH A 168 568 137 HOH HOH . F 4 HOH A 169 569 152 HOH HOH . F 4 HOH A 170 570 138 HOH HOH . F 4 HOH A 171 571 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . B 2 -0.597 16.669 -10.087 1 17.82 ? N1 ORO 301 A 1 HETATM 2 C C2 ORO . . . B 2 -0.843 16.264 -11.369 1 17.62 ? C2 ORO 301 A 1 HETATM 3 O O2 ORO . . . B 2 -1.421 16.976 -12.181 1 19.22 ? O2 ORO 301 A 1 HETATM 4 N N3 ORO . . . B 2 -0.367 15.019 -11.694 1 16.09 ? N3 ORO 301 A 1 HETATM 5 C C4 ORO . . . B 2 0.352 14.169 -10.884 1 16.39 ? C4 ORO 301 A 1 HETATM 6 O O4 ORO . . . B 2 0.752 13.082 -11.315 1 16.32 ? O4 ORO 301 A 1 HETATM 7 C C5 ORO . . . B 2 0.586 14.66 -9.56 1 17.88 ? C5 ORO 301 A 1 HETATM 8 C C6 ORO . . . B 2 0.115 15.906 -9.208 1 20.7 ? C6 ORO 301 A 1 HETATM 9 C C7 ORO . . . B 2 0.341 16.5 -7.845 1 23.49 ? C7 ORO 301 A 1 HETATM 10 O O71 ORO . . . B 2 1.46 17.052 -7.663 1 23.73 ? O71 ORO 301 A 1 HETATM 11 O O72 ORO . . . B 2 -0.558 16.337 -7.02 1 24.93 ? O72 ORO 301 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #