data_8I6C # _model_server_result.job_id 7LJ8y2IVOJFzgyHJu9Anxg _model_server_result.datetime_utc '2024-11-24 14:50:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8i6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8I6C # _exptl.entry_id 8I6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.112 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8I6C _cell.length_a 46.51 _cell.length_b 59.92 _cell.length_c 75.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8I6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 N2 O4' _chem_comp.formula_weight 158.112 _chem_comp.id OG6 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '6-Formyl-uracil hydrate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C08 OG6 doub 237 n n N05 C08 OG6 sing 238 n n N05 C09 OG6 sing 239 n n C08 N04 OG6 sing 240 n n O02 C09 OG6 doub 241 n n C09 C07 OG6 sing 242 n n N04 C06 OG6 sing 243 n n C07 C06 OG6 doub 244 n n C06 C10 OG6 sing 245 n n C10 O2 OG6 sing 246 n n C10 H1 OG6 sing 247 n n C07 H2 OG6 sing 248 n n N05 H4 OG6 sing 249 n n C10 O1 OG6 sing 250 n n O2 H5 OG6 sing 251 n n O1 H6 OG6 sing 252 n n N04 H3 OG6 sing 253 n n # _atom_sites.entry_id 8I6C _atom_sites.fract_transf_matrix[1][1] 0.021501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OG6 A 1 301 301 OG6 6FU . C 3 HOH A 1 401 81 HOH HOH . C 3 HOH A 2 402 63 HOH HOH . C 3 HOH A 3 403 4 HOH HOH . C 3 HOH A 4 404 27 HOH HOH . C 3 HOH A 5 405 40 HOH HOH . C 3 HOH A 6 406 22 HOH HOH . C 3 HOH A 7 407 15 HOH HOH . C 3 HOH A 8 408 51 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 59 HOH HOH . C 3 HOH A 11 411 110 HOH HOH . C 3 HOH A 12 412 26 HOH HOH . C 3 HOH A 13 413 87 HOH HOH . C 3 HOH A 14 414 53 HOH HOH . C 3 HOH A 15 415 34 HOH HOH . C 3 HOH A 16 416 18 HOH HOH . C 3 HOH A 17 417 47 HOH HOH . C 3 HOH A 18 418 7 HOH HOH . C 3 HOH A 19 419 43 HOH HOH . C 3 HOH A 20 420 48 HOH HOH . C 3 HOH A 21 421 33 HOH HOH . C 3 HOH A 22 422 114 HOH HOH . C 3 HOH A 23 423 35 HOH HOH . C 3 HOH A 24 424 97 HOH HOH . C 3 HOH A 25 425 21 HOH HOH . C 3 HOH A 26 426 71 HOH HOH . C 3 HOH A 27 427 5 HOH HOH . C 3 HOH A 28 428 60 HOH HOH . C 3 HOH A 29 429 101 HOH HOH . C 3 HOH A 30 430 66 HOH HOH . C 3 HOH A 31 431 64 HOH HOH . C 3 HOH A 32 432 84 HOH HOH . C 3 HOH A 33 433 120 HOH HOH . C 3 HOH A 34 434 14 HOH HOH . C 3 HOH A 35 435 67 HOH HOH . C 3 HOH A 36 436 20 HOH HOH . C 3 HOH A 37 437 11 HOH HOH . C 3 HOH A 38 438 8 HOH HOH . C 3 HOH A 39 439 78 HOH HOH . C 3 HOH A 40 440 23 HOH HOH . C 3 HOH A 41 441 65 HOH HOH . C 3 HOH A 42 442 3 HOH HOH . C 3 HOH A 43 443 16 HOH HOH . C 3 HOH A 44 444 38 HOH HOH . C 3 HOH A 45 445 10 HOH HOH . C 3 HOH A 46 446 68 HOH HOH . C 3 HOH A 47 447 49 HOH HOH . C 3 HOH A 48 448 88 HOH HOH . C 3 HOH A 49 449 57 HOH HOH . C 3 HOH A 50 450 13 HOH HOH . C 3 HOH A 51 451 54 HOH HOH . C 3 HOH A 52 452 70 HOH HOH . C 3 HOH A 53 453 44 HOH HOH . C 3 HOH A 54 454 94 HOH HOH . C 3 HOH A 55 455 37 HOH HOH . C 3 HOH A 56 456 104 HOH HOH . C 3 HOH A 57 457 50 HOH HOH . C 3 HOH A 58 458 93 HOH HOH . C 3 HOH A 59 459 86 HOH HOH . C 3 HOH A 60 460 17 HOH HOH . C 3 HOH A 61 461 72 HOH HOH . C 3 HOH A 62 462 55 HOH HOH . C 3 HOH A 63 463 80 HOH HOH . C 3 HOH A 64 464 39 HOH HOH . C 3 HOH A 65 465 69 HOH HOH . C 3 HOH A 66 466 83 HOH HOH . C 3 HOH A 67 467 77 HOH HOH . C 3 HOH A 68 468 30 HOH HOH . C 3 HOH A 69 469 2 HOH HOH . C 3 HOH A 70 470 102 HOH HOH . C 3 HOH A 71 471 32 HOH HOH . C 3 HOH A 72 472 92 HOH HOH . C 3 HOH A 73 473 91 HOH HOH . C 3 HOH A 74 474 28 HOH HOH . C 3 HOH A 75 475 89 HOH HOH . C 3 HOH A 76 476 12 HOH HOH . C 3 HOH A 77 477 98 HOH HOH . C 3 HOH A 78 478 31 HOH HOH . C 3 HOH A 79 479 95 HOH HOH . C 3 HOH A 80 480 74 HOH HOH . C 3 HOH A 81 481 62 HOH HOH . C 3 HOH A 82 482 100 HOH HOH . C 3 HOH A 83 483 112 HOH HOH . C 3 HOH A 84 484 1 HOH HOH . C 3 HOH A 85 485 73 HOH HOH . C 3 HOH A 86 486 36 HOH HOH . C 3 HOH A 87 487 61 HOH HOH . C 3 HOH A 88 488 45 HOH HOH . C 3 HOH A 89 489 6 HOH HOH . C 3 HOH A 90 490 46 HOH HOH . C 3 HOH A 91 491 79 HOH HOH . C 3 HOH A 92 492 42 HOH HOH . C 3 HOH A 93 493 29 HOH HOH . C 3 HOH A 94 494 19 HOH HOH . C 3 HOH A 95 495 96 HOH HOH . C 3 HOH A 96 496 82 HOH HOH . C 3 HOH A 97 497 99 HOH HOH . C 3 HOH A 98 498 121 HOH HOH . C 3 HOH A 99 499 107 HOH HOH . C 3 HOH A 100 500 75 HOH HOH . C 3 HOH A 101 501 113 HOH HOH . C 3 HOH A 102 502 106 HOH HOH . C 3 HOH A 103 503 41 HOH HOH . C 3 HOH A 104 504 116 HOH HOH . C 3 HOH A 105 505 122 HOH HOH . C 3 HOH A 106 506 24 HOH HOH . C 3 HOH A 107 507 108 HOH HOH . C 3 HOH A 108 508 52 HOH HOH . C 3 HOH A 109 509 85 HOH HOH . C 3 HOH A 110 510 58 HOH HOH . C 3 HOH A 111 511 115 HOH HOH . C 3 HOH A 112 512 117 HOH HOH . C 3 HOH A 113 513 109 HOH HOH . C 3 HOH A 114 514 123 HOH HOH . C 3 HOH A 115 515 25 HOH HOH . C 3 HOH A 116 516 118 HOH HOH . C 3 HOH A 117 517 56 HOH HOH . C 3 HOH A 118 518 105 HOH HOH . C 3 HOH A 119 519 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 OG6 . . . B 2 0.507 17.738 -7.841 1 32.43 ? O2 OG6 301 A 1 HETATM 2 C C10 OG6 . . . B 2 0.358 16.532 -7.934 1 26.03 ? C10 OG6 301 A 1 HETATM 3 C C06 OG6 . . . B 2 0.022 16.035 -9.278 1 25.08 ? C06 OG6 301 A 1 HETATM 4 C C07 OG6 . . . B 2 0.464 14.768 -9.674 1 22.21 ? C07 OG6 301 A 1 HETATM 5 C C09 OG6 . . . B 2 0.255 14.345 -10.976 1 20.42 ? C09 OG6 301 A 1 HETATM 6 O O02 OG6 . . . B 2 0.657 13.208 -11.332 1 18.62 ? O02 OG6 301 A 1 HETATM 7 N N05 OG6 . . . B 2 -0.367 15.181 -11.826 1 20.01 ? N05 OG6 301 A 1 HETATM 8 C C08 OG6 . . . B 2 -0.771 16.418 -11.415 1 20.58 ? C08 OG6 301 A 1 HETATM 9 O O01 OG6 . . . B 2 -1.343 17.195 -12.205 1 20.06 ? O01 OG6 301 A 1 HETATM 10 N N04 OG6 . . . B 2 -0.567 16.855 -10.177 1 21.41 ? N04 OG6 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #