data_8I6M
#
_model_server_result.job_id            12OOiGivHpJLC-cU20C8cQ 
_model_server_result.datetime_utc      '2024-10-25 20:29:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i6m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1003}' 
#
_entry.id    8I6M 
#
_exptl.entry_id    8I6M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I6M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I6M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 L N N 
? 4 O N N 
? 4 R N N 
? 4 U N N 
? 4 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G C1 OLA . A OLA 1001 1_555 H O3P AMP . A AMP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale2 J C1 OLA . F OLA 1001 1_555 K O1P AMP . F AMP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale3 M C1 OLA . D OLA 1001 1_555 N O1P AMP . D AMP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale4 P C1 OLA . C OLA 1001 1_555 Q O3P AMP . C AMP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale5 S C1 OLA . B OLA 1001 1_555 T O1P AMP . B AMP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale6 V C1 OLA . E OLA 1001 1_555 W O3P AMP . E AMP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
metalc ? metalc1 A O MET 320 A MET 320 1_555 I MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc2 A OG SER 321 A SER 321 1_555 I MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc3 A OE1 GLU 322 A GLU 322 1_555 I MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc4 H O1P AMP . A AMP 1002 1_555 I MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc5 B O MET 320 F MET 320 1_555 L MG MG . F MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc6 B OG SER 321 F SER 321 1_555 L MG MG . F MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc7 B OE1 GLU 322 F GLU 322 1_555 L MG MG . F MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc8 K O3P AMP . F AMP 1002 1_555 L MG MG . F MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc9 C O MET 320 D MET 320 1_555 O MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc10 C OG SER 321 D SER 321 1_555 O MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc11 C OE1 GLU 322 D GLU 322 1_555 O MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc12 N O3P AMP . D AMP 1002 1_555 O MG MG . D MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc13 D O MET 320 C MET 320 1_555 R MG MG . C MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc14 D OG SER 321 C SER 321 1_555 R MG MG . C MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc15 D OE1 GLU 322 C GLU 322 1_555 R MG MG . C MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc16 Q O1P AMP . C AMP 1002 1_555 R MG MG . C MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc17 E O MET 320 B MET 320 1_555 U MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc18 E OG SER 321 B SER 321 1_555 U MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc19 E OE1 GLU 322 B GLU 322 1_555 U MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc20 T O3P AMP . B AMP 1002 1_555 U MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc21 F O MET 320 E MET 320 1_555 X MG MG . E MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc22 F OG SER 321 E SER 321 1_555 X MG MG . E MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc23 F OE1 GLU 322 E GLU 322 1_555 X MG MG . E MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc24 W O1P AMP . E AMP 1002 1_555 X MG MG . E MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8I6M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 OLA A 1 1001 1001 OLA OLA . 
H 3 AMP A 1 1002 1002 AMP AMP . 
I 4 MG A 1 1003 1101 MG MG . 
J 2 OLA F 1 1001 1001 OLA OLA . 
K 3 AMP F 1 1002 1002 AMP AMP . 
L 4 MG F 1 1003 1101 MG MG . 
M 2 OLA D 1 1001 1001 OLA OLA . 
N 3 AMP D 1 1002 1002 AMP AMP . 
O 4 MG D 1 1003 1101 MG MG . 
P 2 OLA C 1 1001 1001 OLA OLA . 
Q 3 AMP C 1 1002 1002 AMP AMP . 
R 4 MG C 1 1003 1101 MG MG . 
S 2 OLA B 1 1001 1001 OLA OLA . 
T 3 AMP B 1 1002 1002 AMP AMP . 
U 4 MG B 1 1003 1101 MG MG . 
V 2 OLA E 1 1001 1001 OLA OLA . 
W 3 AMP E 1 1002 1002 AMP AMP . 
X 4 MG E 1 1003 1101 MG MG . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               202.614 
_atom_site.Cartn_y               158.93 
_atom_site.Cartn_z               169.34 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.01 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1003 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#