data_8I6V
#
_model_server_result.job_id            alb04iKF6vxazi_6w1Ywsw 
_model_server_result.datetime_utc      '2025-03-06 04:24:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8i6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    8I6V 
#
_exptl.entry_id    8I6V 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8I6V 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8I6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E OE1 GLU 426 E GLU 426 1_555 J MN MN . E MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc2 E OE2 GLU 426 E GLU 426 1_555 J MN MN . E MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc3 I O3A 3PO . E 3PO 801 1_555 J MN MN . E MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 281 n n 
N C13 POV sing 282 n n 
N C14 POV sing 283 n n 
N C15 POV sing 284 n n 
P O11 POV sing 285 n n 
P O12 POV sing 286 n n 
P O13 POV sing 287 n n 
P O14 POV doub 288 n n 
C1 C2 POV sing 289 n n 
C1 O11 POV sing 290 n n 
C1 H1 POV sing 291 n n 
C1 H1A POV sing 292 n n 
C2 C3 POV sing 293 n n 
C2 O21 POV sing 294 n n 
C2 H2 POV sing 295 n n 
C3 O31 POV sing 296 n n 
C3 H3 POV sing 297 n n 
C3 H3A POV sing 298 n n 
C210 C211 POV sing 299 n n 
C210 C29 POV doub 300 z n 
C210 H210 POV sing 301 n n 
C310 C311 POV sing 302 n n 
C310 C39 POV sing 303 n n 
C310 H310 POV sing 304 n n 
C310 H31A POV sing 305 n n 
C11 C12 POV sing 306 n n 
C11 O12 POV sing 307 n n 
C11 H11 POV sing 308 n n 
C11 H11A POV sing 309 n n 
C211 C212 POV sing 310 n n 
C211 H211 POV sing 311 n n 
C211 H21A POV sing 312 n n 
C311 C312 POV sing 313 n n 
C311 H311 POV sing 314 n n 
C311 H31B POV sing 315 n n 
C12 H12 POV sing 316 n n 
C12 H12A POV sing 317 n n 
C212 C213 POV sing 318 n n 
C212 H212 POV sing 319 n n 
C212 H21B POV sing 320 n n 
C312 C313 POV sing 321 n n 
C312 H312 POV sing 322 n n 
C312 H31C POV sing 323 n n 
C13 H13 POV sing 324 n n 
C13 H13A POV sing 325 n n 
C13 H13B POV sing 326 n n 
C213 C214 POV sing 327 n n 
C213 H213 POV sing 328 n n 
C213 H21C POV sing 329 n n 
C313 C314 POV sing 330 n n 
C313 H313 POV sing 331 n n 
C313 H31D POV sing 332 n n 
C14 H14 POV sing 333 n n 
C14 H14A POV sing 334 n n 
C14 H14B POV sing 335 n n 
C214 C215 POV sing 336 n n 
C214 H214 POV sing 337 n n 
C214 H21D POV sing 338 n n 
C314 C315 POV sing 339 n n 
C314 H314 POV sing 340 n n 
C314 H31E POV sing 341 n n 
C15 H15 POV sing 342 n n 
C15 H15A POV sing 343 n n 
C15 H15B POV sing 344 n n 
C215 C216 POV sing 345 n n 
C215 H215 POV sing 346 n n 
C215 H21E POV sing 347 n n 
C315 C316 POV sing 348 n n 
C315 H315 POV sing 349 n n 
C315 H31F POV sing 350 n n 
C216 C217 POV sing 351 n n 
C216 H216 POV sing 352 n n 
C216 H21F POV sing 353 n n 
C316 H316 POV sing 354 n n 
C316 H31G POV sing 355 n n 
C316 H31H POV sing 356 n n 
C217 C218 POV sing 357 n n 
C217 H217 POV sing 358 n n 
C217 H21G POV sing 359 n n 
C218 H218 POV sing 360 n n 
C218 H21H POV sing 361 n n 
C218 H21J POV sing 362 n n 
C21 O21 POV sing 363 n n 
C21 C22 POV sing 364 n n 
C21 O22 POV doub 365 n n 
C22 C23 POV sing 366 n n 
C22 H22 POV sing 367 n n 
C22 H22A POV sing 368 n n 
C23 C24 POV sing 369 n n 
C23 H23 POV sing 370 n n 
C23 H23A POV sing 371 n n 
C24 C25 POV sing 372 n n 
C24 H24 POV sing 373 n n 
C24 H24A POV sing 374 n n 
C25 C26 POV sing 375 n n 
C25 H25 POV sing 376 n n 
C25 H25A POV sing 377 n n 
C26 C27 POV sing 378 n n 
C26 H26 POV sing 379 n n 
C26 H26A POV sing 380 n n 
C27 C28 POV sing 381 n n 
C27 H27 POV sing 382 n n 
C27 H27A POV sing 383 n n 
C28 C29 POV sing 384 n n 
C28 H28 POV sing 385 n n 
C28 H28A POV sing 386 n n 
C29 H29 POV sing 387 n n 
C31 O31 POV sing 388 n n 
C31 C32 POV sing 389 n n 
C31 O32 POV doub 390 n n 
C32 C33 POV sing 391 n n 
C32 H32 POV sing 392 n n 
C32 H32A POV sing 393 n n 
C33 C34 POV sing 394 n n 
C33 H33 POV sing 395 n n 
C33 H33A POV sing 396 n n 
C34 C35 POV sing 397 n n 
C34 H34 POV sing 398 n n 
C34 H34A POV sing 399 n n 
C35 C36 POV sing 400 n n 
C35 H35 POV sing 401 n n 
C35 H35A POV sing 402 n n 
C36 C37 POV sing 403 n n 
C36 H36 POV sing 404 n n 
C36 H36A POV sing 405 n n 
C37 C38 POV sing 406 n n 
C37 H37 POV sing 407 n n 
C37 H37A POV sing 408 n n 
C38 C39 POV sing 409 n n 
C38 H38 POV sing 410 n n 
C38 H38A POV sing 411 n n 
C39 H39 POV sing 412 n n 
C39 H39A POV sing 413 n n 
#
_atom_sites.entry_id                     8I6V 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 POV C 1 201 201 POV POV . 
G 5 PO4 D 1 901 802 PO4 PO4 . 
H 5 PO4 D 1 902 803 PO4 PO4 . 
I 6 3PO E 1 801 800 3PO LIG . 
J 7 MN E 1 802 801 MN MN . 
K 5 PO4 E 1 803 804 PO4 PO4 . 
L 8 HOH D 1 1001 902 HOH HOH . 
M 8 HOH E 1 901 900 HOH HOH . 
M 8 HOH E 2 902 901 HOH HOH . 
M 8 HOH E 3 903 903 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . F 4 129.534 170.419 134.567 1 91 ? N POV 201 C 1 
HETATM 2 P P POV . . . F 4 128.912 166.083 135.67 1 91 ? P POV 201 C 1 
HETATM 3 C C1 POV . . . F 4 130.589 164.031 135.631 1 91 ? C1 POV 201 C 1 
HETATM 4 C C2 POV . . . F 4 130.896 162.77 136.482 1 91 ? C2 POV 201 C 1 
HETATM 5 C C3 POV . . . F 4 131.322 163.163 137.897 1 91 ? C3 POV 201 C 1 
HETATM 6 C C210 POV . . . F 4 140.652 163.33 137.989 1 91 ? C210 POV 201 C 1 
HETATM 7 C C310 POV . . . F 4 140.891 157.325 141.675 1 91 ? C310 POV 201 C 1 
HETATM 8 C C11 POV . . . F 4 130.539 168.186 135.345 1 91 ? C11 POV 201 C 1 
HETATM 9 O O11 POV . . . F 4 129.682 164.815 136.329 1 91 ? O11 POV 201 C 1 
HETATM 10 C C211 POV . . . F 4 142.103 163.017 137.895 1 91 ? C211 POV 201 C 1 
HETATM 11 C C311 POV . . . F 4 141.309 155.963 142.244 1 91 ? C311 POV 201 C 1 
HETATM 12 C C12 POV . . . F 4 129.924 168.996 134.193 1 91 ? C12 POV 201 C 1 
HETATM 13 O O12 POV . . . F 4 130.373 166.857 135.131 1 91 ? O12 POV 201 C 1 
HETATM 14 C C212 POV . . . F 4 142.973 163.974 138.713 1 91 ? C212 POV 201 C 1 
HETATM 15 C C312 POV . . . F 4 142.576 155.958 143.102 1 91 ? C312 POV 201 C 1 
HETATM 16 C C13 POV . . . F 4 130.633 171.105 135.344 1 91 ? C13 POV 201 C 1 
HETATM 17 O O13 POV . . . F 4 128.336 165.717 134.365 1 91 ? O13 POV 201 C 1 
HETATM 18 C C213 POV . . . F 4 144.371 164.231 138.149 1 91 ? C213 POV 201 C 1 
HETATM 19 C C313 POV . . . F 4 143.873 156.175 142.327 1 91 ? C313 POV 201 C 1 
HETATM 20 C C14 POV . . . F 4 128.238 170.511 135.35 1 91 ? C14 POV 201 C 1 
HETATM 21 O O14 POV . . . F 4 128.366 167.027 136.707 1 91 ? O14 POV 201 C 1 
HETATM 22 C C214 POV . . . F 4 145.195 165.241 138.944 1 91 ? C214 POV 201 C 1 
HETATM 23 C C314 POV . . . F 4 144.599 154.869 142.051 1 91 ? C314 POV 201 C 1 
HETATM 24 C C15 POV . . . F 4 129.346 171.165 133.257 1 91 ? C15 POV 201 C 1 
HETATM 25 C C215 POV . . . F 4 145.867 164.612 140.16 1 91 ? C215 POV 201 C 1 
HETATM 26 C C315 POV . . . F 4 145.101 154.745 140.617 1 91 ? C315 POV 201 C 1 
HETATM 27 C C216 POV . . . F 4 146.659 165.61 141.003 1 91 ? C216 POV 201 C 1 
HETATM 28 C C316 POV . . . F 4 143.986 154.654 139.59 1 91 ? C316 POV 201 C 1 
HETATM 29 C C217 POV . . . F 4 147.364 164.961 142.189 1 91 ? C217 POV 201 C 1 
HETATM 30 C C218 POV . . . F 4 148.126 165.989 143.008 1 91 ? C218 POV 201 C 1 
HETATM 31 C C21 POV . . . F 4 131.765 160.782 135.523 1 91 ? C21 POV 201 C 1 
HETATM 32 O O21 POV . . . F 4 131.909 162.098 135.769 1 91 ? O21 POV 201 C 1 
HETATM 33 C C22 POV . . . F 4 132.685 160.266 134.461 1 91 ? C22 POV 201 C 1 
HETATM 34 O O22 POV . . . F 4 130.942 160.104 136.13 1 91 ? O22 POV 201 C 1 
HETATM 35 C C23 POV . . . F 4 133.938 161.099 134.177 1 91 ? C23 POV 201 C 1 
HETATM 36 C C24 POV . . . F 4 134.945 160.918 135.319 1 91 ? C24 POV 201 C 1 
HETATM 37 C C25 POV . . . F 4 136.374 161.367 134.994 1 91 ? C25 POV 201 C 1 
HETATM 38 C C26 POV . . . F 4 137.294 161.168 136.205 1 91 ? C26 POV 201 C 1 
HETATM 39 C C27 POV . . . F 4 138.774 160.989 135.858 1 91 ? C27 POV 201 C 1 
HETATM 40 C C28 POV . . . F 4 139.67 161.173 137.091 1 91 ? C28 POV 201 C 1 
HETATM 41 C C29 POV . . . F 4 139.62 162.555 137.652 1 91 ? C29 POV 201 C 1 
HETATM 42 C C31 POV . . . F 4 132.907 162.491 139.491 1 91 ? C31 POV 201 C 1 
HETATM 43 O O31 POV . . . F 4 132.535 162.51 138.191 1 91 ? O31 POV 201 C 1 
HETATM 44 C C32 POV . . . F 4 133.795 161.342 139.781 1 91 ? C32 POV 201 C 1 
HETATM 45 O O32 POV . . . F 4 132.522 163.347 140.286 1 91 ? O32 POV 201 C 1 
HETATM 46 C C33 POV . . . F 4 134.936 161.606 140.763 1 91 ? C33 POV 201 C 1 
HETATM 47 C C34 POV . . . F 4 136.197 160.86 140.314 1 91 ? C34 POV 201 C 1 
HETATM 48 C C35 POV . . . F 4 137.21 160.655 141.441 1 91 ? C35 POV 201 C 1 
HETATM 49 C C36 POV . . . F 4 138.565 160.137 140.953 1 91 ? C36 POV 201 C 1 
HETATM 50 C C37 POV . . . F 4 138.542 158.76 140.286 1 91 ? C37 POV 201 C 1 
HETATM 51 C C38 POV . . . F 4 139.863 158.443 139.576 1 91 ? C38 POV 201 C 1 
HETATM 52 C C39 POV . . . F 4 140.731 157.324 140.158 1 91 ? C39 POV 201 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#